mRNA_E_fasciculatus_S2_contig7257.15448.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7257.15448.1
Unique NamemRNA_E_fasciculatus_S2_contig7257.15448.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7257.15448.1 vs.
Match: Biogenesis (of lysosome-related organelles complex 1 subunit 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR3_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.480e-51
Identity = 89/97 (91.75%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:    1 MELEPTGVVGQVVHDCEQKRPKSLEQLATARKAATKAVEKASFLLQPKAAVRAENVARGQTQVDRAARWLKEDTRDLEHLSHGWSNAYSDLSKELVV 291
            MELEPTGVVGQVVHD EQ+RPKSLEQLATARKAATK VEKASFLLQPKAAVRAENVARGQTQVDRAAR LKEDTRDLEHLS GW+NAY+DLSKELV+
Sbjct:    1 MELEPTGVVGQVVHDFEQQRPKSLEQLATARKAATKTVEKASFLLQPKAAVRAENVARGQTQVDRAARRLKEDTRDLEHLSQGWANAYADLSKELVL 97
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7257.15448.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Biogenesis1.480e-5191.75of lysosome-related organelles complex 1 subunit 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7257contigE_fasciculatus_S2_contig7257:211..2839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size297
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_001020.1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842390.0602307-CDS-E_fasciculatus_S2_contig7257:210..3211696842390.0602307-CDS-E_fasciculatus_S2_contig7257:210..321Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7257 211..321 -
1696842390.0739007-CDS-E_fasciculatus_S2_contig7257:913..10171696842390.0739007-CDS-E_fasciculatus_S2_contig7257:913..1017Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7257 914..1017 -
1696842390.0851688-CDS-E_fasciculatus_S2_contig7257:2757..28391696842390.0851688-CDS-E_fasciculatus_S2_contig7257:2757..2839Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7257 2758..2839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7257.15448.1prot_E_fasciculatus_S2_contig7257.15448.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7257 211..2839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7257.15448.1

>prot_E_fasciculatus_S2_contig7257.15448.1 ID=prot_E_fasciculatus_S2_contig7257.15448.1|Name=mRNA_E_fasciculatus_S2_contig7257.15448.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=99bp
MELEPTGVVGQVVHDCEQKRPKSLEQLATARKAATKAVEKASFLLQPKAA
VRAENVARGQTQVDRAARWLKEDTRDLEHLSHGWSNAYSDLSKELVVS*
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mRNA from alignment at E_fasciculatus_S2_contig7257:211..2839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7257.15448.1 ID=mRNA_E_fasciculatus_S2_contig7257.15448.1|Name=mRNA_E_fasciculatus_S2_contig7257.15448.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2629bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7257:211..2839- (Ectocarpus fasciculatus EfasUO2)
ATGGAACTCGAGCCGACGGGTGTGGTGGGCCAAGTAGTTCATGACTGCGA
GCAGAAGAGGCCGAAGAGCCTTGAACAGCTTGGTGAGCCCATGCAAGACA
TTAACGTACCATGCGGCGACAGCTTGATAGATCCAGCGCCCTGTAGCTTA
GACAGACAGGCACCAGAGCATGCAACGAAGCGTGCAAGCGTGTGGGATGG
AAACGGGCACAACTGGAGCGGTCCATACGCAAACGATGTGGCCAGGTGGC
TCCGCCCGCTGGCGACTGTTTCGCTCATGTGTCACTGCCCCCCCCTTGTG
CGCGATTTCAAAAGGACTGCTGTAACTAGCGGAGAATCCCCCGCTGAGCA
CTCAGCACGGCTGCCTGTTGCTGTACACACACCTACGCATACACCCATGT
GTGTACCGCGTATCATGGGTTGTGTTGTGTTCATGTAGCCAACACTCTTT
TGTAACTGCTACCAGTGTACGATGTACCAACTTGCTTCCCGGCGTGCAGC
ACTATCACCAGCAACTAAGGTGCAGCAACTGATCTGCTGCTTGCGCGGAA
CGATTACGTTAGCCCGCGGGGGCTCGGGCGTAAGACTTCCACTTCTTTCT
GCTGTAAAGTATTACTGCACCGAATGAGCGAGAACACATGGAATCTTGGG
CCCGCTCAATGGGTGAAGCGGCATCACGTCCATATGTCTTGAGACGCCAC
TCCAACACGTGGGCACCCTATGCATACGATATGTTGCCGTTGGGAGAGCG
TCACTAACGACGACAGCAGTCAGTGCACAGCTCACTCTCGCCGCGAACCT
CGAGAGTTTCGTACCGAAAGCGGCGGAGACATGGCAGTTTCAAAGCTCGA
TTGCTCCATAACCAAGCTTGTACGCCAAGGTTTTGCGGTTTTGAAAACAT
GACATGACGTCGAGGCCTTTCCGTCGACGTATCGGGTGCTTTCTGCACCT
GCTTGGGTGTGGAGCAACCAAGCTCTGAAAGTGGGGCTGGGGGGTGTGCC
ATCTCTCCGCATCTTCCGGTATTCCAGAAAGGAGAACTCGGTCAACATAC
TGCTGCAGGTTCTATAGGTTGCATAAGATACCACACCCCCTCTGAGCCGA
GTTTAGAATCTCTTTTGTTCCATGACAAGAGGGTTCCGAAATCAAATGAC
ATGTACTTGTACCGTTTCGGAGAGCTAGCTCTCGACAAGACAACTACGTA
ACTGCAGTTAGGTTCCTCCGCCATTTCCGCCTCCGTCACTGCTTGCCCTG
CGGAGTGTTGAAGCTTTGAAAACCGGTCCAGGGGTCACGTATCACGTATC
ACGTAGACCCTGAGTCAATCCCTAACCGACCCCCGAATTTCCACCTATAT
TCCCTACTTTATCCCATTATATTTGCAAGATACAACCCGCCTTGGCTACT
GCCTCGTGGTCACCGTCTTTAGGCGGGTTGACATCGGGTGAATCCAGCAT
CATCCATTATGTCTTGCTGAAAACAAAGTCGGCCGCCGTGGTAAAGTCGC
GCCACCAGCTACTTACGCTAATATGCGTACTTCAATTGATGGCCTGCGTC
ACCCTGCCGTCTCTGTGTCATTAAGCATGCGGCCGTGTATGCATACCAGA
CTGGAACTCGCCGGACCATCTATGTTTTACGCCCATTGATTTTTTTATCT
CTCGGGTGTAATTTCAAATTTGTCCTTGTCTCGCCCCCCCCCTGCCGGTG
CACCACCTACCTCCGGCCTTCCCGGCCGGATCTACTCTGCCGTACCCCCG
GCGCACCACCTACCCTCCGCCTGCCCGGCGGCACTGCATCTACTCTGCGG
GTCCCCTCTCCCTCTCGAGTAGCAACAGCCCGCAAGGCGGCGACGAAGGC
CGTCGAGAAAGCCTCCTTTCTGCTGCAGCCCAAGGCCGCCGTGAGGGCGG
AGAACGTGGCCAGAGGCCAGACGCAGGTACGGGGGGTGGATGCTGTATCC
GGTTTGGCCTAGAGCCGAAGAATGTCTTGATATAAGAGTGCTGCTGTACA
TATTCAAATTTGTACCCATTTTTTTCTTTTTGGTTCGATGGGTTTCGCTG
GACTGTTTGAGTCAAGAACACGCCAGCTGTGTGAGCTTCGGAAACGTCGC
ACCGCACATGGCTGTTCAGCTGTGATGTGGTCCTGCCTCTCTGCTTTATT
TTCATCTCTTGCATCACCCCCATGCTCTCATGAGCCAGCCCACTCCGCAG
AGATCAGTTGTAAAATATTGAGGTTATATGTTGTTTCTGTCGGTCGGTCG
ACTGCGCCTTTGTGAAGACATCTTAGCGCCACCGCCACATGTTGAAACAC
TCCAGCAAGGCTCCCAAACCGTTCTGACCCCCCCGAAGCAAGAAGACTAC
AGGCGTGGTCTTCCCCTTGCGACAGTTGTTTTTCCTGCTCCCCCTTAATC
GTGTGGCCTCTCTTCGTCGACGTGCGCCTGCCTCCTCTACATCCCAACAA
GTGGGCCGCCACTTGCCCTTGCGCGCAACTGCTGTAACCCTGTCCCCCGC
CCGACCCGCCTGCTGCAGGTTGACCGTGCGGCCCGCTGGCTGAAGGAAGA
CACGAGGGATCTTGAGCACTTGAGCCACGGCTGGTCCAACGCTTACTCCG
ACCTCTCGAAGGAGCTCGTCGTGAGTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7257:211..2839-

>mRNA_E_fasciculatus_S2_contig7257.15448.1 ID=mRNA_E_fasciculatus_S2_contig7257.15448.1|Name=mRNA_E_fasciculatus_S2_contig7257.15448.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=297bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7257:211..2839- (Ectocarpus fasciculatus EfasUO2)
ATGGAACTCGAGCCGACGGGTGTGGTGGGCCAAGTAGTTCATGACTGCGA
GCAGAAGAGGCCGAAGAGCCTTGAACAGCTTGCAACAGCCCGCAAGGCGG
CGACGAAGGCCGTCGAGAAAGCCTCCTTTCTGCTGCAGCCCAAGGCCGCC
GTGAGGGCGGAGAACGTGGCCAGAGGCCAGACGCAGGTTGACCGTGCGGC
CCGCTGGCTGAAGGAAGACACGAGGGATCTTGAGCACTTGAGCCACGGCT
GGTCCAACGCTTACTCCGACCTCTCGAAGGAGCTCGTCGTGAGTTGA
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