mRNA_E_fasciculatus_S2_contig7252.15446.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7252.15446.1
Unique NamemRNA_E_fasciculatus_S2_contig7252.15446.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7252.15446.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH32_ECTSI)

HSP 1 Score: 500 bits (1287), Expect = 3.130e-174
Identity = 258/322 (80.12%), Postives = 276/322 (85.71%), Query Frame = 1 
Query:    1 DLENWDIECARKHLDAIRDSVTTHDDLHEFTLMKGEIVVNVLDLAGLEGAPGVFDEVTQRCRVVFTSKKXXXXXXXXXXXXXXXKLTTSYETSTCTFNDVFDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGECMSRWDKTRYMRHALVIRYVDCASNSVRETTAMAHPSIPASQLYEMARSIEANITIRTAKWMSSKSLPTPLNAGSFNNSPPSQPLFKRKSYKGLMFLLFIVALIFFAIDSTAAVFMLLSVIGALTGAYSGSKQQEQQQRIRDAGLFFFNAASKRTLGSNGVGLGVYALSFLLAIQG-GGESSQTNSSYPY 963
            DLE WDIECARKHLDAI+DSVTTHDDLH+FT MKGE VVN LDLAGLE APGVFDEVTQRCRVVFT+KK               KLTTSY+TSTCTFND+ DFLCCPTGGTMYSEKNIHGVTQTLGDHDPG+CMSRWDKTR+MRHALVIRYVDCASNSV+ETTAMAHPSIPASQLYEMARSIEANITIRTA WM  KSLPT LNAGSFNNSPPS PLFKRKSYKGLMFLL IV+LIFFA++ TAAVFM LSV+ AL GAYSGSK Q  Q+R+R+AG +  NAASKRTLGSNG G GVYALSF L +Q   G SSQ+ SSYPY
Sbjct:  153 DLEKWDIECARKHLDAIKDSVTTHDDLHQFTFMKGEKVVNALDLAGLEEAPGVFDEVTQRCRVVFTNKKRLIFTQVLQVFVQQ-KLTTSYQTSTCTFNDILDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGDCMSRWDKTRHMRHALVIRYVDCASNSVKETTAMAHPSIPASQLYEMARSIEANITIRTADWMKCKSLPTALNAGSFNNSPPSPPLFKRKSYKGLMFLLLIVSLIFFAVNPTAAVFMFLSVLAALFGAYSGSKTQ--QKRVRNAGSWILNAASKRTLGSNGAGAGVYALSFFLGLQNTDGSSSQSASSYPY 471
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BLAST of mRNA_E_fasciculatus_S2_contig7252.15446.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA59_9PHAE)

HSP 1 Score: 384 bits (986), Expect = 6.510e-130
Identity = 210/360 (58.33%), Postives = 243/360 (67.50%), Query Frame = 1 
Query:    1 DLENWDIECARKHLDAIRDSVTTHDDLHEFTLMKGEIVVNVLDLAGLEGAPGVFDEVTQRCRVVFTSKKXXXXXXXXXXXXXXX-----------------------------------------KLTTSYETSTCTFNDVFDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGECMSRWDKTRYMRHALVIRYVDCASNSVRETTAMAHPSIPASQLYEMARSIEANITIRTAKWMSSKSLPTPLNAGSFNNSPPSQPLFKRKSYKGLMFLLFIVALIFFAIDSTAAVFMLLSVIGALTGAYSGSKQQEQQQRIRDAGLFFFNAASKRTLGSNGVGLGVYALSFLLAIQGGGESSQTNSSY 957
            DLE WDIECA KHLDAI+DSVTTHDDLHEFTLMKGE VVN LDLAGL  APG+FD++TQRCRVVFT+KK                                                        +L+TSY+TSTCTFND+ +FLCCPTGG+MYSEK+I GVTQTLGDHDPG+CMSRWDKTR+MRHALVIRYVDCAS+SV ET AMAHPS+PASQLYEMARSIEANIT+R   W  SKSLPT L+A  F+NS P                         A+D+TAAVFM+ +V+ AL GAYSGS+ Q  ++RIR+AG + FN  SK+TLGSNG G GVYA+S +L +QG GESSQT S Y
Sbjct:   21 DLEEWDIECATKHLDAIKDSVTTHDDLHEFTLMKGEKVVNALDLAGLVDAPGLFDDLTQRCRVVFTNKKRLIFTQANHSAVVGLPKMRCLASLLTCCHDRWSRRTWTAYCATINASEVLQVFVHQELSTSYQTSTCTFNDILEFLCCPTGGSMYSEKDIDGVTQTLGDHDPGDCMSRWDKTRFMRHALVIRYVDCASHSVLETRAMAHPSVPASQLYEMARSIEANITVRMTDWTKSKSLPTALDASRFDNSSPXXXXXXXXXXXXXXXXXXXXXXXXXAVDTTAAVFMVFAVLVALYGAYSGSRTQ--RRRIRNAGWWIFNV-SKKTLGSNGAGAGVYAISVILGLQGTGESSQTASYY 377
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BLAST of mRNA_E_fasciculatus_S2_contig7252.15446.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP8_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 8.410e-100
Identity = 173/328 (52.74%), Postives = 208/328 (63.41%), Query Frame = 1 
Query:   97 MKGEIVVNVLDLAGLEGAPGVFDEVTQRCRVVFTSKKXXXXXXXXXXXXXXXK-----------------------------------------LTTSYETSTCTFNDVFDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGECMSRWDKTRYMRHALVIRYVDCASNSVRETTAMAHPSIPASQLYEMARSIEANITIRTAKWMSSKSLPTPLNAGSFNNSPPSQPLFKRKSYKGLMFLLFIVALIFFAIDSTAAVFMLLSVIGALTGAYSGSKQQEQQQRIRDAGLFFFNAASKRTLGSNGVGLGVYALSFLLAIQ--GGGESSQTNS 951
            MKGE  VNVLDLAG+E APG++D VTQ+CRVVFT++K                                                         LTTSY+TSTCTF D  D LCCPTGGT+ SEK+I+GVTQTLGDHDPG CM+RWDKTR+MRHALVIRY+DCASNSV+ETT MA  S PAS+LYEMAR+I+ NITI+   W+S KSLP PL A  F N  P Q L K+K YK L+F+L +V+LIFFAI+ TAAVFML++V  A+ GAYSGSK    + R + AG   F + SK T+ +N  GL VY LSF L I   G G+ S T +
Sbjct:    1 MKGEHAVNVLDLAGMEDAPGLYDTVTQQCRVVFTNEKRLVFTQANHSAEVGLPKMNCLASLLTCFHDRWSRRKWTSYYASIKASEVLQVFVQQTLTTSYQTSTCTFTDFLDVLCCPTGGTLKSEKDINGVTQTLGDHDPGSCMTRWDKTRFMRHALVIRYLDCASNSVQETTLMALASTPASKLYEMARAIDTNITIKANNWLSHKSLPNPLAAQPFRNQTPPQALIKQKPYKILVFILLVVSLIFFAINPTAAVFMLIAVFAAVFGAYSGSKSPVMRAR-KSAGFGMFGSGSKTTVSTNAFGLAVYLLSFFLGIGSIGSGDPSGTGT 327
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7252.15446.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized3.130e-17480.12protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.510e-13058.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.410e-10052.74protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7252contigE_fasciculatus_S2_contig7252:4101..7613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size966
Hectar predicted targeting categoryother localisation
Exons5
Cds size966
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842389.7774074-CDS-E_fasciculatus_S2_contig7252:4100..44641696842389.7774074-CDS-E_fasciculatus_S2_contig7252:4100..4464Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7252 4101..4464 -
1696842389.7875688-CDS-E_fasciculatus_S2_contig7252:4719..48721696842389.7875688-CDS-E_fasciculatus_S2_contig7252:4719..4872Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7252 4720..4872 -
1696842389.8040335-CDS-E_fasciculatus_S2_contig7252:5334..54821696842389.8040335-CDS-E_fasciculatus_S2_contig7252:5334..5482Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7252 5335..5482 -
1696842389.827752-CDS-E_fasciculatus_S2_contig7252:6211..62871696842389.827752-CDS-E_fasciculatus_S2_contig7252:6211..6287Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7252 6212..6287 -
1696842389.8394244-CDS-E_fasciculatus_S2_contig7252:7388..76131696842389.8394244-CDS-E_fasciculatus_S2_contig7252:7388..7613Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7252 7389..7613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7252.15446.1prot_E_fasciculatus_S2_contig7252.15446.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7252 4101..7613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7252.15446.1

>prot_E_fasciculatus_S2_contig7252.15446.1 ID=prot_E_fasciculatus_S2_contig7252.15446.1|Name=mRNA_E_fasciculatus_S2_contig7252.15446.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=322bp
DLENWDIECARKHLDAIRDSVTTHDDLHEFTLMKGEIVVNVLDLAGLEGA
PGVFDEVTQRCRVVFTSKKRLIFTQQVLQVFVQQKLTTSYETSTCTFNDV
FDFLCCPTGGTMYSEKNIHGVTQTLGDHDPGECMSRWDKTRYMRHALVIR
YVDCASNSVRETTAMAHPSIPASQLYEMARSIEANITIRTAKWMSSKSLP
TPLNAGSFNNSPPSQPLFKRKSYKGLMFLLFIVALIFFAIDSTAAVFMLL
SVIGALTGAYSGSKQQEQQQRIRDAGLFFFNAASKRTLGSNGVGLGVYAL
SFLLAIQGGGESSQTNSSYPY*
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mRNA from alignment at E_fasciculatus_S2_contig7252:4101..7613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7252.15446.1 ID=mRNA_E_fasciculatus_S2_contig7252.15446.1|Name=mRNA_E_fasciculatus_S2_contig7252.15446.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3513bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7252:4101..7613- (Ectocarpus fasciculatus EfasUO2)
GACCTCGAGAACTGGGACATCGAGTGCGCCAGGAAGCACCTGGACGCCAT
CAGGGACAGCGTCACGACGCACGACGACCTCCACGAGTTCACGCTCATGA
AGGGCGAGATTGTGGTGAACGTGTTGGACCTCGCCGGGCTGGAGGGAGCC
CCCGGGGTGTTCGACGAAGTAACCCAGCGCTGCCGTGTCGTCTTCACCAG
CAAGAAGCGCCTCATCTTTACGCAGGTACTGTGCCGTGGGCTTGATGCGG
GATGACATGGCCATGGAATTCTACGTACCATGGTATGTAGCGGAACGACC
CGGCGGGAGCTTTGGTTTCGAGTTTCCTTGAGATTGGCCTCCCAGAAACA
ACGAACGGAAGATAGGGGGCATGTGTCTATGTACGTGGGGGTGTCGAGCC
ACGAGCGATGGATGGGTCACACGGGAAGTGCCTAGTAGATGGAGTGTTTG
AGCTGGGGAAAAAGACCTTCCACGGGCGCCCCTCTCGCTTACGAAGTACC
CCCGCCGGCGCCTCCCTGGGTATCTTCTCCTTCCTCGTCCCTTGGCTTGC
CTAATGCCCCTGGGCGGTGAACACCGGTTGGACCGATCGTCGATGAAGTC
TACTATAATACGCTACGTTTGTTGCGGTCCATCGCTACTACGAGTCAACC
CCCCCCCTTCCGATTGGCCATCGGTGATCGGCCTGTGGGAAAGAAAGCCC
CGTCCTCTCGAGGACGCAAGGTCAACGGTCTTAACCGCTACTGTAAGTAA
GGTATGCAACACATGAGTACGCCCCCCCCCACCCACCCACCCACCCCGCT
CGCCCTGACTGCTACATCCAGGCTAATCACACGGCGGAGGTCGGTCTGCC
GAAGATGCGCTGCCTGGCTTCGCTGCTGTCGTGCTTCCACGACCGCTGGT
CACGCCGGACGTGGCATGCGTACTGCGCGACCATCAACGCCTCTCAGGTG
AAAGGAGGCTCGGCGCCCGTGTTTTTTGTTTTGTTTTGCGGTGGTTCTCT
AGCCGTGTCATGGTGTCCCTCGAGGATGTTTTTTGTGCTGACGTGGTCTT
GTGCCTTCAGGGCCGTGTCATACGCCAAAAATGGGGAGGCAGCCAGCCAG
CCAGGCAGCCGTTCGTCCACCGGCCGTTCGTCTGGCGAGGCGGTACAGCG
CCCTCCCCGAGACGTCTCTTTCCCCTTACCACGTTGGTTCCCCCCCCCCT
TTTTTGTCGTAGCCGCTGCTTTTCGTTACGACCTCGTTGCTTCCGTCACT
TATTTCTTCCTTTGCTTCTGGCCAATGTCTGTCCATGGCCGCCTGGTTGT
TGTCGTTGTCAACCCCCCCCTTCGAGCAGGTGCTCCAGGTCTTCGTGCAG
CAGAAGCTCACCACTTCTTACGAGACCTCCACCTGCACCTTCAACGACGT
CTGTGAGTGACGCTCGCTAACTTTACCAGGAGCAGGCAGTAGTCTTTCTG
TCTTGAGATTTGGCGAGGACAAGGTCTCAGAAAAGCATCACGGGAGAAAG
CGGGCCAGGTATTGCCGCAACCCCCCCCCGGCAAGTGGTGTTGTCGCTTA
CAAGCTTTACTGCCATCGTTGACACTTACATATTCGGTTGATACATACGT
GTGGTCTCTTTTTTAAATGGACCTTCACTGTACGACACTGGACCACGTTT
GGAATCTTTTAGACGCCAAGATTACTGCTCGTGATTTTCCTTTCTCGAAC
CGTACCCGCTGCGCTGCGTAGCCCCGACCGAAACGATGATCGGGTGTGTG
TGTAGATATTCGACGATACTCACCAAACTGGTTTGCTGCAGAAGTTTGGG
GGTGAACCGTTTGGCACAGACTTTCATGGTCTCAACCTTCTCTGTGTGCG
CTAGGGCCACACCGACGCCCCTTCAATCCAGACCCAACCGCTCCGCCCAC
AAGTCCGTGGGTATTTTTTGCGCTTTCTCCTCGCTCGCCCTTGTCTTCAA
CGCGTGCTTTGACTTGTTTTGTTAACGTACTTACTTTCATGCAATCGAGG
CAGTGAGTGAAACACTTGTTGGATACTTGGCTTATTTTGAGTCTGCTGCC
CCCTGACCGAACCTCGTTTGCATACACGCCCGCGCGCCGCCCCCGCCCCC
GTTCACTATATTTGTATTTATAAATATATAGTCGATTTCCTTTGCTGTCC
GACGGGGGGCACCATGTACTCCGAGAAGAACATTCACGGCGTCACGCAGA
CGCTCGGAGACCACGACCCGGGTGAATGCATGAGCCGCTGGGACAAGACG
CGCTACATGCGCCACGCATTGGTCATTCGGTAAGAGCTAGTGCAGTTGTA
TGGAGGGATCTCGGTTGAATCTGCGGAAAAGCGGTGTGTTTGTACTCTTC
GTGTGTGAGGGTTGTCTGGCGATTGACTTGTTGTGATGGCAGAAATTTCG
GAACAGTTTCCTTTACTGTGAAGACACCAACAACATTGGCAGCCTTGGGT
CAAAGGAGGAGCACGTCGTGCTTTCCAACACTCTCTGTCTTGTAGTACAG
CATAGACTATAGCAGTAAATACGCTCCCGGAAATCCGGCACCCCTTTCGT
CTCCCTTCCAGGAACGATCCACTCCCTCGCGGAACCTTCGTCTCCGTTTG
GCTGTCTTAGTTTCGTCGACGACGCCATCAACCCACCTCCCGCTCCCTCC
GCGATCGATCTCCCTTTCCCTCCTTGTCGGCGATGCCACGCGCACCCGTG
CCACAAAAACGCACCCACGTCGCTCCAAATCACGAGAATAGCTACGTGGA
CTGCGCGAGCAACTCGGTGAGGGAGACCACTGCCATGGCTCACCCCTCGA
TCCCCGCCTCTCAGCTGTACGAGATGGCCCGCTCTATCGAAGCCAACATC
ACCATCAGGACGGCCAAGTGGATGAGCTCCAAGAGCCTTCCCACGTGAGA
CAAGACATGGCATACGTTTTGCTGTAGGCGGGGTGGGGGAGGTTGTCACA
ACGATGCTGAAATCATCATGCACGATCATGAATCAAACCATGCCATCGTT
CTCACCACTTGGAACGCCTGCTTCCCGTACCTGCGTGATCGAGCTCACCA
CGGCTTAGTGTACCTCCTCTCCCCCTGCTCAACGTTAAATACCGTTGTAC
ACATCCCCCCCCCCCGACATCGCCGTATTCCGCTCACCCCCAACTCCAGC
CCGCTGAATGCCGGGAGCTTCAACAACTCCCCTCCGTCGCAGCCCCTCTT
CAAGCGGAAGTCGTACAAGGGCCTCATGTTCTTGCTATTCATCGTGGCCC
TCATCTTCTTCGCGATCGACTCGACGGCGGCGGTCTTCATGCTCCTCTCG
GTCATCGGCGCCCTAACCGGGGCCTACTCCGGCAGCAAGCAGCAAGAGCA
GCAGCAGCGGATCCGCGACGCCGGGTTGTTCTTCTTCAACGCCGCCTCCA
AGAGGACGCTCGGCTCCAACGGCGTGGGACTCGGGGTGTACGCGCTCTCC
TTCTTGCTGGCAATCCAGGGCGGCGGCGAGAGCAGCCAGACGAACTCGTC
TTACCCGTACTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7252:4101..7613-

>mRNA_E_fasciculatus_S2_contig7252.15446.1 ID=mRNA_E_fasciculatus_S2_contig7252.15446.1|Name=mRNA_E_fasciculatus_S2_contig7252.15446.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=966bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7252:4101..7613- (Ectocarpus fasciculatus EfasUO2)
GACCTCGAGAACTGGGACATCGAGTGCGCCAGGAAGCACCTGGACGCCAT
CAGGGACAGCGTCACGACGCACGACGACCTCCACGAGTTCACGCTCATGA
AGGGCGAGATTGTGGTGAACGTGTTGGACCTCGCCGGGCTGGAGGGAGCC
CCCGGGGTGTTCGACGAAGTAACCCAGCGCTGCCGTGTCGTCTTCACCAG
CAAGAAGCGCCTCATCTTTACGCAGCAGGTGCTCCAGGTCTTCGTGCAGC
AGAAGCTCACCACTTCTTACGAGACCTCCACCTGCACCTTCAACGACGTC
TTCGATTTCCTTTGCTGTCCGACGGGGGGCACCATGTACTCCGAGAAGAA
CATTCACGGCGTCACGCAGACGCTCGGAGACCACGACCCGGGTGAATGCA
TGAGCCGCTGGGACAAGACGCGCTACATGCGCCACGCATTGGTCATTCGC
TACGTGGACTGCGCGAGCAACTCGGTGAGGGAGACCACTGCCATGGCTCA
CCCCTCGATCCCCGCCTCTCAGCTGTACGAGATGGCCCGCTCTATCGAAG
CCAACATCACCATCAGGACGGCCAAGTGGATGAGCTCCAAGAGCCTTCCC
ACCCCGCTGAATGCCGGGAGCTTCAACAACTCCCCTCCGTCGCAGCCCCT
CTTCAAGCGGAAGTCGTACAAGGGCCTCATGTTCTTGCTATTCATCGTGG
CCCTCATCTTCTTCGCGATCGACTCGACGGCGGCGGTCTTCATGCTCCTC
TCGGTCATCGGCGCCCTAACCGGGGCCTACTCCGGCAGCAAGCAGCAAGA
GCAGCAGCAGCGGATCCGCGACGCCGGGTTGTTCTTCTTCAACGCCGCCT
CCAAGAGGACGCTCGGCTCCAACGGCGTGGGACTCGGGGTGTACGCGCTC
TCCTTCTTGCTGGCAATCCAGGGCGGCGGCGAGAGCAGCCAGACGAACTC
GTCTTACCCGTACTGA
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