|
|
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7246.15438.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD6_9PHAE) HSP 1 Score: 192 bits (487), Expect = 1.100e-53 Identity = 151/184 (82.07%), Postives = 159/184 (86.41%), Query Frame = 3
Query: 414 DSEATRTPASHDQGFDHNPFGEQVPATTGEGYTDRSASPPSRRRGRVGDRLDGNEGEQXXXXXXXXXXXXXXXXXXXX----GYQGGSGYEEERQARVGEDVDGRSNGRRAPSND-DGTREQYGDPGWEQEERGAEGGGAGGAEEEG--DAQQRDSELPTQFPGVREAFEXXXXXXXXXVGNDD 944
DSEATRTPASHDQGFDHNPFGEQ+PAT GEGYTDRSAS PSRRRGRV DRL GNEGEQXXXXXXXXXXXXXXXXXXXX GY+ G GYEEERQAR+G DGRSNGRR S+D D TREQYGDPGWEQEERG + GG GG ++ DAQQRDSELPTQFPGVREAFEXXXXXXXXXVGND+
Sbjct: 42 DSEATRTPASHDQGFDHNPFGEQLPATAGEGYTDRSAS-PSRRRGRVHDRLGGNEGEQXXXXXXXXXXXXXXXXXXXXXXXDGYRVG-GYEEERQARLG---DGRSNGRRRASSDHDLTREQYGDPGWEQEERGVQRGGLGGPDDXXXXDAQQRDSELPTQFPGVREAFEXXXXXXXXXVGNDE 220
BLAST of mRNA_E_fasciculatus_S2_contig7246.15438.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT46_ECTSI) HSP 1 Score: 148 bits (374), Expect = 2.730e-35 Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 1
Query: 1 RFCGTDDEEVELVFSLKEIKVRMWMGVGALLHFSETTEAQTLEMLFREGGDPLLFQSHSKSFAAELIMATMEPKVIRKEP 240
RFCGTDDEEVELVFSLKEIKVRM +G+ ALLHFSETTEAQTLEMLFREGGDPLLFQSHSKSFAAELIMATMEPKVIRKEP
Sbjct: 224 RFCGTDDEEVELVFSLKEIKVRMLVGM-ALLHFSETTEAQTLEMLFREGGDPLLFQSHSKSFAAELIMATMEPKVIRKEP 302
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 104.8 |
| Seed ortholog evalue | 8.4e-20 |
| Seed eggNOG ortholog | 2880.D8LT46 |
| Preferred name | RAD9B |
| Model size | 1617 |
| KEGG ko | ko:K10994,ko:K10995 |
| KEGG Pathway | ko04218,map04218 |
| Hectar predicted targeting category | signal peptide |
| GOs | GO:0000018,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000723,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0008408,GO:0009314,GO:0009628,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010212,GO:0010389,GO:0010562,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010948,GO:0010972,GO:0012505,GO:0016020,GO:0016043,GO:0016787,GO:0016788,GO:0017124,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022402,GO:0023051,GO:0023056,GO:0030234,GO:0030295,GO:0030896,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031401,GO:0031570,GO:0031573,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032147,GO:0032200,GO:0032268,GO:0032270,GO:0032991,GO:0033314,GO:0033554,GO:0033674,GO:0034641,GO:0035861,GO:0042325,GO:0042327,GO:0042592,GO:0042826,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045738,GO:0045786,GO:0045859,GO:0045860,GO:0045910,GO:0045930,GO:0045934,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090734,GO:0098772,GO:0104004,GO:1901360,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902229,GO:1902231,GO:1902531,GO:1902533,GO:1902749,GO:1902750,GO:1903047,GO:1990421,GO:2000042,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244 |
| Exons | 3 |
| EggNOG free text desc. | intra-S DNA damage checkpoint |
| EggNOG OGs | KOG2810@1,KOG2810@2759 |
| Ec32 ortholog description | Rad9/Ddc1 |
| Ec32 ortholog | Ec-08_004110.1 |
| EC | 3.1.11.2 |
| Cds size | 1035 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03400 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842388.866898-UTR-E_fasciculatus_S2_contig7246:499..565 | 1696842388.866898-UTR-E_fasciculatus_S2_contig7246:499..565 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7246 500..565 + |
| 1696842388.9103422-UTR-E_fasciculatus_S2_contig7246:2555..3071 | 1696842388.9103422-UTR-E_fasciculatus_S2_contig7246:2555..3071 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7246 2556..3071 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842388.8780088-CDS-E_fasciculatus_S2_contig7246:565..583 | 1696842388.8780088-CDS-E_fasciculatus_S2_contig7246:565..583 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7246 566..583 + |
| 1696842388.8899786-CDS-E_fasciculatus_S2_contig7246:1044..1412 | 1696842388.8899786-CDS-E_fasciculatus_S2_contig7246:1044..1412 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7246 1045..1412 + |
| 1696842388.9006817-CDS-E_fasciculatus_S2_contig7246:1906..2555 | 1696842388.9006817-CDS-E_fasciculatus_S2_contig7246:1906..2555 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7246 1907..2555 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7246.15438.1 >prot_E_fasciculatus_S2_contig7246.15438.1 ID=prot_E_fasciculatus_S2_contig7246.15438.1|Name=mRNA_E_fasciculatus_S2_contig7246.15438.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=345bp
MWMGVGALLHFSETTEAQTLEMLFREGGDPLLFQSHSKSFAAELIMATME
PKVIRKEPPPTAAVAAGGAKRDPGTAAGSGGGGVTRVRATRARSRMGGGG
KGTRGIGAAAGGGEARTRRPRGRRLRTIRALTTILSGNKCLQRQARATPT
AQLLPLRDAAAVLATGLTATKANSSSVGRTAARTKKTRAAAATTAIRVAA
AMRRSGRHESGKTSMGEATGGGRPATTMEHESSTATRDGNRRSGGRKAEV
PGGRRKRGMRSSAIRSCRPNSRGCGKRSSRSCRHSSPALAMTMTRTVVVR
AGAAGAARLGEGGVGRLMAMRRTGGPCKGAKEEGGSCTRKRRNR* back to topmRNA from alignment at E_fasciculatus_S2_contig7246:500..3071+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig7246.15438.1 ID=mRNA_E_fasciculatus_S2_contig7246.15438.1|Name=mRNA_E_fasciculatus_S2_contig7246.15438.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2572bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7246:500..3071+ (Ectocarpus fasciculatus EfasUO2)
AGGTTCTGCGGCACAGACGATGAAGAGGTGGAGCTCGTGTTCAGTCTCAA
GGAGATTAAGGTCAGAATGTGGATGGGGGTGGGGGTGGGGGTACGCAGGG
GAGTACTGCGGGTGTTGGAGGGGGGAACTCGGGGGGGTTCAGCAGGGTTG
ATCGGTGTTTTTGAGACCATTTGGACAAAGGGTTTCGGTTCAGGTCGTCC
TTGTGTATGGGAATGCTCCAAGACCAACACTCGAAACCCAAGAGCTGCAC
ACAGCACACGAGGCCGCCACACCCAAGCATTCCGTGTCCGCTAAACTTGA
ATACTGCTCTTGCCTATTGGCAGCAGTTGATCCGCTATACCCTGAAAAGT
GCCGGATGCCCGCCGGAATGTGCCCGGCCGACCAATAACCCCTTGGCACT
TCGCGGCACTACTCAGAGACCACTACCTATATTTCAACCCGCACCACTCG
AATCAAAAGTTGTGAACGCCCCCTTTCGTATCCGATTTTTTGAACGTCTC
GGCTGAGATGTCTCTCTTTTCTTTCTCGCGGCGCTTCTCCCTAAGGCCCT
CCTGCACTTCAGCGAGACCACGGAGGCGCAGACCCTGGAGATGCTCTTCC
GGGAGGGGGGGGACCCTCTCCTGTTCCAGAGCCACTCCAAGTCCTTCGCC
GCGGAGCTGATCATGGCCACGATGGAGCCCAAGGTCATCCGCAAGGAGCC
ACCGCCGACAGCGGCGGTAGCGGCAGGTGGCGCGAAGAGGGACCCGGGGA
CGGCGGCGGGGTCTGGGGGGGGGGGGGTTACCCGCGTCAGGGCGACCAGA
GCCAGGAGTCGGATGGGCGGTGGAGGGAAGGGGACCCGGGGCATCGGGGC
GGCGGCGGGGGGAGGGGAAGCCAGGACTCGGAGGCCACGAGGACGCCGGC
TTCGCACGATCAGGTGAAGGCAGCTCTTAGCGAGCGGTGTCTCGGTGTGT
CGGGTTTTGTTCCCTTTGCGTACGGTGTAGTTTGCGAGGAGGTGTGTTTG
ATGCGCGTATCGGCGGGGGTCGGTGTGTCCTTTCCTTCTGAAGTCGTTTG
TGATGCATTCCCGATTGAAGTACGCCGTGCATGTAACAACGGCGACCCTT
TTTTTTTTCTCGCAAGCGTTCCTGTGTCCGCACCCCCCCCCCTACATTTT
TGTTGTTTGCCGTTTCCTATTGTAGGAGTGATGGTACTCCAAGCCCGGTC
TATTGAGTTTGACAGGCTGAGGACTTGTTGACCAGACGAACACCATGCCC
CAAAACCAACGCCTCTCATCCTCGAATGGCTGAGGAGGGCCTGCCTCCTG
TACGTGGCTGGCACACACGAACTCAAACCGTAGCCGTGACGGATTCATCG
GTGGCCTTTACATTGACGAGCCCCCTCCCTCCCGCCCCTTCTACATGCAC
TTTGCAGGGCTTTGACCACAATCCTTTCGGGGAACAAGTGCCTGCAACGA
CAGGCGAGGGCTACACCGACCGCTCAGCTTCTCCCCCTTCGCGACGCCGC
GGCCGTGTTGGCGACCGGCTTGACGGCAACGAAGGCGAACAGCAGCAGCG
TCGGGAGGACGGCGGCTCGTACGAAGAAGACCAGGGCGGCGGCGGCGACG
ACGGCTATCAGGGTGGCAGCGGCTATGAGGAGGAGCGGCAGGCACGAGTC
GGGGAAGACGTCGATGGGAGAAGCAACGGGCGGCGGGCGCCCAGCAACGA
CGATGGAACACGAGAGCAGTACGGCGACCCGGGATGGGAACAGGAGGAGC
GGGGGGCGGAAGGCGGAGGTGCCGGGGGGGCGGAGGAAGAGGGGGATGCG
CAGCAGCGCGATTCGGAGCTGCCGACCCAATTCCCGGGGGTGCGGGAAGC
GTTCGAGTCGGAGCTGCCGACACAGTTCCCCGGCGTTGGCAATGACGATG
ACGAGGACGGTAGTGGTCCGGGCGGGGGCGGCGGGGGCGGCAAGGCTAGG
AGAGGGGGGGGTCGGGAGGTTGATGGCGATGAGGAGGACGGGGGGCCCGT
GCAAGGGAGCAAAAGAAGAAGGAGGGTCGTGCACGAGGAAGAGGAGGAAT
AGGTGACGGGGTAGTAGCTTCGCCTTGGCGAGTGAACCGCTAAAGGCGTG
TGTATGCATACATCCCAGGAAGTATAGATAGATAGCACGGTGTAGAGGTT
GATATCGGTGGGGGTCCGGAAGGACGAGGGCGCTGCTGTGTACGCGCGTC
GCGCACGCATGCGTTGTTGTAGATCTATCTGTCTATCCTTGCACCCGTTG
CGGGAGGACCACCGTGTTAGTGTTTTTATTTTTTGCACAGGCGTGAGGTA
CCCGCGTTCGATTGAGTGGTAGTAGCGCCAGCGTGTGCGTGCCGCAGCAA
GGGTTGCAGGTGCTTGTGTCGTGTGAACAGCAGATGATGACGATGCCAAG
TTTTCTTGTAGCAGTAGCAGTGCCGGTGCTGCGGTCTACAGCAGTGCAGT
AGGCTTGAAGGATATGACGAGGGCGATAGAGGCCGGGAAGAGGCGACAAA
GAAATTCTGCAACAACCATGAGCATTGGCGGGCGCGCCCGCCGAGCGGCC
CAAATGGCGCGACGATAGAAAC back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig7246:500..3071+ >mRNA_E_fasciculatus_S2_contig7246.15438.1 ID=mRNA_E_fasciculatus_S2_contig7246.15438.1|Name=mRNA_E_fasciculatus_S2_contig7246.15438.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1035bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7246:500..3071+ (Ectocarpus fasciculatus EfasUO2)
ATGTGGATGGGGGTGGGGGCCCTCCTGCACTTCAGCGAGACCACGGAGGC
GCAGACCCTGGAGATGCTCTTCCGGGAGGGGGGGGACCCTCTCCTGTTCC
AGAGCCACTCCAAGTCCTTCGCCGCGGAGCTGATCATGGCCACGATGGAG
CCCAAGGTCATCCGCAAGGAGCCACCGCCGACAGCGGCGGTAGCGGCAGG
TGGCGCGAAGAGGGACCCGGGGACGGCGGCGGGGTCTGGGGGGGGGGGGG
TTACCCGCGTCAGGGCGACCAGAGCCAGGAGTCGGATGGGCGGTGGAGGG
AAGGGGACCCGGGGCATCGGGGCGGCGGCGGGGGGAGGGGAAGCCAGGAC
TCGGAGGCCACGAGGACGCCGGCTTCGCACGATCAGGGCTTTGACCACAA
TCCTTTCGGGGAACAAGTGCCTGCAACGACAGGCGAGGGCTACACCGACC
GCTCAGCTTCTCCCCCTTCGCGACGCCGCGGCCGTGTTGGCGACCGGCTT
GACGGCAACGAAGGCGAACAGCAGCAGCGTCGGGAGGACGGCGGCTCGTA
CGAAGAAGACCAGGGCGGCGGCGGCGACGACGGCTATCAGGGTGGCAGCG
GCTATGAGGAGGAGCGGCAGGCACGAGTCGGGGAAGACGTCGATGGGAGA
AGCAACGGGCGGCGGGCGCCCAGCAACGACGATGGAACACGAGAGCAGTA
CGGCGACCCGGGATGGGAACAGGAGGAGCGGGGGGCGGAAGGCGGAGGTG
CCGGGGGGGCGGAGGAAGAGGGGGATGCGCAGCAGCGCGATTCGGAGCTG
CCGACCCAATTCCCGGGGGTGCGGGAAGCGTTCGAGTCGGAGCTGCCGAC
ACAGTTCCCCGGCGTTGGCAATGACGATGACGAGGACGGTAGTGGTCCGG
GCGGGGGCGGCGGGGGCGGCAAGGCTAGGAGAGGGGGGGGTCGGGAGGTT
GATGGCGATGAGGAGGACGGGGGGCCCGTGCAAGGGAGCAAAAGAAGAAG
GAGGGTCGTGCACGAGGAAGAGGAGGAATAGGTGA back to top
|