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Homology
BLAST of mRNA_E_fasciculatus_S2_contig724.15429.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK8_9PHAE) HSP 1 Score: 223 bits (569), Expect = 1.880e-67 Identity = 116/133 (87.22%), Postives = 121/133 (90.98%), Query Frame = 1
Query: 517 MGGVSFIVTLCLLLTANTDGLSSKKKRRKGRDSVYDRKRECETGTCGHLVPLEAKNCVHECVSPDCYRKTYAEPLEDGEINLQLSKNFMSCAQRDLKQSMVAKRRSDRQEASGSAKGKSAATALDPASDNSRQ 915
M G SF+VTL LLLTA TDG+SSKKKRRKGR SVYDRKRECET TCGHLVPLEAKNCVHECVSPDCYRKTYAEPLEDGEINLQLSKNFM+CAQRD+K SMVAKRRSDRQ ASGSA KSAATA PASD+SRQ
Sbjct: 1 MRGFSFMVTLGLLLTATTDGMSSKKKRRKGRISVYDRKRECETETCGHLVPLEAKNCVHECVSPDCYRKTYAEPLEDGEINLQLSKNFMACAQRDIKNSMVAKRRSDRQAASGSATSKSAATAHGPASDSSRQ 133
BLAST of mRNA_E_fasciculatus_S2_contig724.15429.1 vs.
Match: Protein-serine/threonine (kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX6_ECTSI) HSP 1 Score: 119 bits (298), Expect = 3.580e-25 Identity = 75/87 (86.21%), Postives = 76/87 (87.36%), Query Frame = -3
Query: 1 MALACSSGRVTLSRAATSLLGTRAASATVCSVAPRLRS-RSTCSPGVTPLTRKGSDSDTAAANAWVSNVATCNVSRRQLSSGGGDVD 258
MALAC GR TLSRAA SLLGTRAASAT CSVAPRLRS RST SPGVTPLTRKGSD+ TA A AWVSNVATCNVSRRQLSS GGDVD
Sbjct: 1 MALACG-GRATLSRAAASLLGTRAASATACSVAPRLRSGRSTSSPGVTPLTRKGSDAGTANA-AWVSNVATCNVSRRQLSSRGGDVD 85
BLAST of mRNA_E_fasciculatus_S2_contig724.15429.1 vs.
Match: Aste57867_13203 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXI9_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.650e-8 Identity = 34/108 (31.48%), Postives = 53/108 (49.07%), Query Frame = 1
Query: 526 VSFIVTLCLLLTANTDGLSSKKKRRKGRDSVYDRKRECETGTCGHLVPLEAKNCVHECVSPDCYRKTYAE-PLEDGEINLQLSKNFMSCAQRDLKQSMVAKRRSDRQE 846
V + + ++T + G + K R R K+ CE C HL + NC+HEC+S +CY + YA PLEDGE++ ++ C ++D + R S R E
Sbjct: 4 VVVLAAMAAIVTVSAKGNKNSKVDRMWRMQ----KKSCEENECRHLDSMTNMNCLHECISGECYGEVYASLPLEDGEVDDYRYNKYLQCIRKDYRSRSKKARESSRDE 107
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig724.15429.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
| Match Name | E-value | Identity | Description | |
|---|
| Uncharacterized | 1.880e-67 | 87.22 | protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... | [more] |
| Protein-serine/threonine | 3.580e-25 | 86.21 | kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX6_... | [more] |
| Aste57867_13203 | 1.650e-8 | 31.48 | protein n=1 Tax=Aphanomyces stellatus TaxID=120398... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1643 |
| Hectar predicted targeting category | signal peptide |
| Exons | 4 |
| Cds size | 495 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842387.91075-UTR-E_fasciculatus_S2_contig724:3029..3545 | 1696842387.91075-UTR-E_fasciculatus_S2_contig724:3029..3545 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig724 3030..3545 + |
| 1696842387.9851453-UTR-E_fasciculatus_S2_contig724:6268..6900 | 1696842387.9851453-UTR-E_fasciculatus_S2_contig724:6268..6900 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig724 6269..6900 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842387.9252489-CDS-E_fasciculatus_S2_contig724:3545..3632 | 1696842387.9252489-CDS-E_fasciculatus_S2_contig724:3545..3632 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig724 3546..3632 + |
| 1696842387.9349465-CDS-E_fasciculatus_S2_contig724:4783..4918 | 1696842387.9349465-CDS-E_fasciculatus_S2_contig724:4783..4918 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig724 4784..4918 + |
| 1696842387.946284-CDS-E_fasciculatus_S2_contig724:5560..5647 | 1696842387.946284-CDS-E_fasciculatus_S2_contig724:5560..5647 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig724 5561..5647 + |
| 1696842387.9576292-CDS-E_fasciculatus_S2_contig724:6082..6268 | 1696842387.9576292-CDS-E_fasciculatus_S2_contig724:6082..6268 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig724 6083..6268 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig724.15429.1 >prot_E_fasciculatus_S2_contig724.15429.1 ID=prot_E_fasciculatus_S2_contig724.15429.1|Name=mRNA_E_fasciculatus_S2_contig724.15429.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=165bp
MGGVSFIVTLCLLLTANTDGLSSKKKRRKGRDSVYDRKRECETGTCGHLV
PLEAKNCVHECVSPDCYRKTYAEPLEDGEINLQLSKNFMSCAQRDLKQSM
VAKRRSDRQEASGSAKGKSAATALDPASDNSRQEDIVLHADGRAIQEPTS
GENVASADSLEGER* back to topmRNA from alignment at E_fasciculatus_S2_contig724:3030..6900+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig724.15429.1 ID=mRNA_E_fasciculatus_S2_contig724.15429.1|Name=mRNA_E_fasciculatus_S2_contig724.15429.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3871bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig724:3030..6900+ (Ectocarpus fasciculatus EfasUO2)
GTCCACATCCCCCCCCCCTGAAGATAGCTGGCGCCGGGATACGTTGCAGG
TGGCGACGTTGCTCACCCAAGCATTGGCAGCAGCAGTGTCAGAATCTGAA
CCCTTTCGAGTGAGCGGGGTCACTCCCGGACTGCAAGTGCTCCTGCTACG
CAGCCGCGGGGCGACTGAACAAACCGTCGCCGACGCTGCCCTCGTGCCCA
AGAGTGATGTCGCCGCTCGCGAGAGCGTGACCCTCCCGCTGCTGCAGGCC
AGAGCCATGTGCTTTGTTGTAACCTGGCCCAAAGAGATAGTGTTGAGCGG
GTACCTACACGGGTTCACGGGTTCGACCCGCTCGACTGCTTGCGTTTCCG
AAGAGGAACTCTGCGCGCGCGGAAAATGCTGTCGATGACTTGAGCTGACT
TGAGCTGTTGACTCTGCACAACTCGCCGCACCACCAGACTCAGCAGCACA
AGAGGAAGCCAACAGCAGTTCAGTCCAGCAGAAGTGCAAAGTTTGGAGGG
AAACGAAAGGATAAGGATGGGAGGGGTTTCCTTCATCGTGACGCTGTGTC
TCTTGCTTACGGCTAACACCGACGGGCTGAGCAGCAAGAAGAAACGGAGG
AAGGTCGGTGCGGTACACTGCTGTATGTCAACACGGAAGGGCTGCGTGTT
GTGTCCTGGCAGATAAATCAATTTCGACTTCTGATGTACATGTTGTTTAT
CCACACCTTCGGAGTTGTGTGCTACCTCCGTCTGTGTGCCCTGCCGTCAT
TACGGACGTTTGGGGCGGGTTATAGTGCCGTAATTAGACCAGTCGGCAAA
CTTTTGTGCTTCAAGTACGTCCACCGTCCGTAGATTGGTAGGTGAACAAG
ACCGGGCTTCGAATCACCGGTTGAGCAGCTTGCCCCGCGGAACCCCCGCC
ACGCATGCGCGTATGCGCGTGCGAATGTCACTCGAATTCGCGACGATCGA
CAGCGAACACAAGCCAAGGACCATGAGCTTATGCGTTTTGGAATGCTACA
AGCACTTCCCTACAACTGTTTCGGGTGGTGGAACACACAGCAGTTACTTC
CCTCTCTTTGCGTTGCTGGATCCTGCTGAGAGTTATGCGCTGGCTATCCC
GACTCTTTCCGCAGCGCCGATACATAGCTGCACGAGAGCTAATACGCTTC
AGTATTGTATACTCCAACATGCAGTGCTGGTTTCACTCTTTTTGTGGCCT
CGAACCACCGGAAACAACCACGACGCGTTAACCCCTGGACGAAACCTGAC
CCTGATGCCAAAGATACATGATGCCGGAAAAGCTCCGAGCGGAGCACGTC
GTGTTTTAGCGCCCGCCTGGATCTAGGTCTCTCCGCCTTTCGACCTTGCA
TCACGGTGCCTCGAGCAACACTCACTCCCCGAGCGTGTGGCCCGCTGGCA
CTCCAACTTGGTTTATTTGGTGCAACTTCACAGCAGTAGTATAGTCTACA
GCAGTGCGCATCACACCCAACGCGTTTGTTCAAGCCTTTCGACAGCAGTG
CCTTGAACGACAACACTTTCATCTGTTGGGCAGAAGAGCCGTCTACCACC
GCGACGGGCCCCTCTTCACTAGTAGTTGCTGCTCTGTGTGCTTGCTCTCC
TGAGATATTTAATGTCGAAATGTCAAGCCCTGATGTAAGGACGCCTGGCA
CACCCTACCCCCGCTTCGCGCAGAATACCGCCCCCACCCTCCCGTCCCGC
CGCCCTCCCGTCGCTGCAACGGGGACCCAACCTCTGTTTTTTCATCGAAT
GCAGGGTAGGGATTCGGTGTACGACCGCAAGCGCGAGTGCGAGACGGGAA
CGTGCGGCCACCTGGTGCCGCTAGAGGCGAAGAACTGCGTTCACGAGTGC
GTGTCGCCTGATTGCTATCGGAAAACATACGCAGAGCCGGTGAGAGAAGC
GAGATGTGCAGTAAGGCAGATAGAGCGAGACAGTGAGTTTGGGTGGGGGG
TTGAGCGCAACGGTAACGATCGATCGGTGGTGTCAACACACGTGTCCTAT
ATTTAGCGGTGGGTTGATTAGCCCTGTGCAGAGAGAAGCAGAGGGGTGGG
TGCAGGGGAGAGAGGCAAGAGTGCGAACATCTCTAGCGGAACTTTAAACG
CGTTGCGGAGTTCAAGACGGACAACAAGCGCTATCGCAACCCGTGGCACT
TTTAATATGGAGGGTCCGGCCGTACGGGTACTCACGCCGAGCACGATACT
TTGGCGACAGGCCCCGCCTCACGTACGTCGGCGTTTAGCGAGCTCCGACA
CGTGCTCCTGTGTGGTGATTCACTCCATCATCTCATCTTCTCCTACCTTG
CGTCTATACCCCGCTGCGCGGTCTGTCTGTCTCTCCCACCCTCTCCCCCT
CTCCCTCTCCCTCTCTCTCTTTCTCTCTCTCTCCCTGTGTGTCTCCCCCC
CTCACTCTCTCTTTCTCTTCCTCTATCTCCCTCTCTCTTTCTCTCCCTCT
CTCTCCCTCTCTCTTTCTCACTCTCTCTCCTTCCCTTCCACTTGTCGAAA
CAACACTCGAAACGTCCGCCGCACGAGACAGCTTGAAGACGGCGAAATCA
ACTTGCAACTGTCCAAGAACTTCATGTCGTGCGCTCAGAGAGACTTAAAA
CAGTCCATGGTTGCCAAGGTGCCAATTGCAATGCGCACCGGGCGAACATT
AATTTTGACACGACCCACATATCGATCGGAACGAAAAATGACGTGTTTTG
GTAGCGTAGGTTGTGTTCCTAGTGCGAAATTGGTCGCCATAATGATGTCT
CGCATATGCATATGTATCCCTTCCTTTCTCTGTCTGTCTGTTGGTCTGTA
TGTGTGTTTTGAACTAGCATCGACCGCGCCAAACCGGCTGACCAATAGAA
GACTTCAGTCTTTACGGCGGGATAATTAACGCGAATACGCCTTCTAGTCA
AAAAGGGGTCTACCGATACGGGAGACTACCTTGTGGCGGTCAGCCTATGT
TTGTCTGTCCCTGTCTCACTCCCTTTCTCCCTCTGCATCGCTTTCTCTGC
CGGGTGCTCTGCTTCTTGCTTTTTCGCTATGTTTTTTTACTCAACACGTG
CAGAGGCGCTCCGACCGACAGGAGGCGTCGGGGAGCGCCAAAGGCAAGTC
GGCTGCCACCGCTCTTGATCCCGCTTCGGACAACTCACGACAAGAGGATA
TTGTGTTGCACGCCGACGGCCGCGCGATTCAGGAACCCACCTCTGGGGAA
AACGTGGCTAGTGCTGATTCTCTTGAGGGTGAACGATGACGAGACGGGGG
ATGGGGATTGAGACATGGGTGCGGAGGCCGGGGAAATTGAGACATTTGAG
TCGTCTGTGACGAGGCAAGGGAGGTTTGCAAGACTTGTATAATCTTTGGG
TTGACTACTCAGTGGGGACCAACCCCCGGCGAGCACACGCGATCAAGTCG
GTTGGTTGGCCGGGCGCGAGAGAGAGAGTGCATGGTCGAGTCTGACAAGG
GAATAGTCTTGTTCCGAAGATGAAGACGACAGTAGTAGACGATTTTTCCA
CGTTTACGTTGAAGAAAGCGCTGTGGAAAAACCATGACTGGCACTGGTGT
GCGAGGACTCCGGGTTGTGATTTGCCTCGTAATTTGACAGGAAGAAACGT
TGTACTGGCCTTAGGAAAACGAACCAAAAACAACGGCAACACGAGAAAAT
TTTCCGTCTCCATCATCGAGACCGTCTCCATACTTTGGCCAAGGCATATT
GCAATGCGGGCAAGAGTTCGTTGTGCTTGCGTTCCGTGTATCTACGCCAG
CAAATAAAAACGCCAAGCAGTGTTCTTCCGTGCTCGAAAGCTCGAAAGGT
TGCTCGATAGCAACACAACACGCGTGGACTCAACTATCTGACTTCGACCC
GCAGAGACTTGGAACATATCC back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig724:3030..6900+ >mRNA_E_fasciculatus_S2_contig724.15429.1 ID=mRNA_E_fasciculatus_S2_contig724.15429.1|Name=mRNA_E_fasciculatus_S2_contig724.15429.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=495bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig724:3030..6900+ (Ectocarpus fasciculatus EfasUO2)
ATGGGAGGGGTTTCCTTCATCGTGACGCTGTGTCTCTTGCTTACGGCTAA
CACCGACGGGCTGAGCAGCAAGAAGAAACGGAGGAAGGGTAGGGATTCGG
TGTACGACCGCAAGCGCGAGTGCGAGACGGGAACGTGCGGCCACCTGGTG
CCGCTAGAGGCGAAGAACTGCGTTCACGAGTGCGTGTCGCCTGATTGCTA
TCGGAAAACATACGCAGAGCCGCTTGAAGACGGCGAAATCAACTTGCAAC
TGTCCAAGAACTTCATGTCGTGCGCTCAGAGAGACTTAAAACAGTCCATG
GTTGCCAAGAGGCGCTCCGACCGACAGGAGGCGTCGGGGAGCGCCAAAGG
CAAGTCGGCTGCCACCGCTCTTGATCCCGCTTCGGACAACTCACGACAAG
AGGATATTGTGTTGCACGCCGACGGCCGCGCGATTCAGGAACCCACCTCT
GGGGAAAACGTGGCTAGTGCTGATTCTCTTGAGGGTGAACGATGA back to top
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