mRNA_E_fasciculatus_S2_contig7223.15402.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7223.15402.1
Unique NamemRNA_E_fasciculatus_S2_contig7223.15402.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7223.15402.1 vs.
Match: Kinesin-like (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL94_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.790e-29
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = -1 
Query:  115 LARLQGLENTWVARVKQFEKLLKLKDLRIESLTLLHKHGPLSSGRPAGLGSGS--GSRHRRGFDTHHQAAE 321
            LARLQGLEN+WVARVKQFEKLL LKDLRIESLTLLHKHGPLSSGRPAG GSGS  G RHRRGFD H Q AE
Sbjct:  578 LARLQGLENSWVARVKQFEKLLALKDLRIESLTLLHKHGPLSSGRPAGAGSGSVSGGRHRRGFDNHRQVAE 648
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BLAST of mRNA_E_fasciculatus_S2_contig7223.15402.1 vs.
Match: Kinesin (motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA5_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.320e-21
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = -1 
Query:  160 LARLQGLENTWVARVKQFEKLLKLKDLRIESLTLLHKHGPLSSGRPAGLGSGSG 321
            LARLQGLENTWVARVKQFE+LL LKDLRIESLTLLHKHGPLSSGRPAG  S SG
Sbjct: 1087 LARLQGLENTWVARVKQFEQLLALKDLRIESLTLLHKHGPLSSGRPAGADSASG 1140
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7223.15402.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Kinesin-like1.790e-2987.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Kinesin2.320e-2190.74motor domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7223contigE_fasciculatus_S2_contig7223:3776..4098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size323
Hectar predicted targeting categorymitochondrion
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842385.6888704-CDS-E_fasciculatus_S2_contig7223:3775..40961696842385.6888704-CDS-E_fasciculatus_S2_contig7223:3775..4096Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7223 3776..4096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7223.15402.1prot_E_fasciculatus_S2_contig7223.15402.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7223 3776..4096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7223.15402.1

>prot_E_fasciculatus_S2_contig7223.15402.1 ID=prot_E_fasciculatus_S2_contig7223.15402.1|Name=mRNA_E_fasciculatus_S2_contig7223.15402.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=107bp
GAPSLLAPPARAAGRPALLPRRGGGAVTLGGGGFFPLLLCRLVVGVETAA
VAATATATKACWPAGGQRPVLVEQRQGLDAEVFELQQLLELLHPRDPRVL
QPLQPGQ
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mRNA from alignment at E_fasciculatus_S2_contig7223:3776..4098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7223.15402.1 ID=mRNA_E_fasciculatus_S2_contig7223.15402.1|Name=mRNA_E_fasciculatus_S2_contig7223.15402.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=323bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7223:3776..4098+ (Ectocarpus fasciculatus EfasUO2)
GGAGCTCCATCTCTTCTTGCGCCTCCCGCCCGCGCTGCCGGGCGTCCCGC
CCTGCTTCCCCGACGGGGTGGCGGCGCCGTTACTCTTGGCGGGGGCGGCT
TCTTCCCCCTCCTCCTCTGCCGCCTGGTGGTGGGTGTCGAAACCGCGGCG
GTGGCGGCTACCGCTACCGCTACCAAGGCCTGCTGGCCGGCCGGAGGACA
GCGGCCCGTGCTTGTGGAGCAGCGTCAGGGACTCGATGCGGAGGTCTTTG
AGCTTCAGCAGCTTCTCGAACTGCTTCACCCTCGCGACCCACGTGTTCTC
CAGCCCCTGCAGCCTGGCCAGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7223:3776..4098+

>mRNA_E_fasciculatus_S2_contig7223.15402.1 ID=mRNA_E_fasciculatus_S2_contig7223.15402.1|Name=mRNA_E_fasciculatus_S2_contig7223.15402.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7223:3776..4098+ (Ectocarpus fasciculatus EfasUO2)
GGAGCTCCATCTCTTCTTGCGCCTCCCGCCCGCGCTGCCGGGCGTCCCGC
CCTGCTTCCCCGACGGGGTGGCGGCGCCGTTACTCTTGGCGGGGGCGGCT
TCTTCCCCCTCCTCCTCTGCCGCCTGGTGGTGGGTGTCGAAACCGCGGCG
GTGGCGGCTACCGCTACCGCTACCAAGGCCTGCTGGCCGGCCGGAGGACA
GCGGCCCGTGCTTGTGGAGCAGCGTCAGGGACTCGATGCGGAGGTCTTTG
AGCTTCAGCAGCTTCTCGAACTGCTTCACCCTCGCGACCCACGTGTTCTC
CAGCCCCTGCAGCCTGGCCAG
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