mRNA_E_fasciculatus_S2_contig7216.15396.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7216.15396.1
Unique NamemRNA_E_fasciculatus_S2_contig7216.15396.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7216.15396.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE57_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 3.260e-37
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 MVLEKLVHAAPTKRVIAMAVGGYITTGATIFYLSQINSSVPDTMRAEWHAATEDYRRYQNMDRVRSS 201
            MVLEKLVHAAPTKRVIAMAVGGY+TTGA I YLSQINSS+PDTMRAEWHAATEDYRRYQNMDRVRSS
Sbjct:    1 MVLEKLVHAAPTKRVIAMAVGGYLTTGAAILYLSQINSSMPDTMRAEWHAATEDYRRYQNMDRVRSS 67
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7216.15396.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.260e-3794.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7216contigE_fasciculatus_S2_contig7216:2725..5367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size204
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001030.1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842384.9750142-CDS-E_fasciculatus_S2_contig7216:2724..27481696842384.9750142-CDS-E_fasciculatus_S2_contig7216:2724..2748Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7216 2725..2748 -
1696842384.9936254-CDS-E_fasciculatus_S2_contig7216:3444..35091696842384.9936254-CDS-E_fasciculatus_S2_contig7216:3444..3509Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7216 3445..3509 -
1696842385.0046322-CDS-E_fasciculatus_S2_contig7216:4555..46081696842385.0046322-CDS-E_fasciculatus_S2_contig7216:4555..4608Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7216 4556..4608 -
1696842385.018308-CDS-E_fasciculatus_S2_contig7216:5305..53671696842385.018308-CDS-E_fasciculatus_S2_contig7216:5305..5367Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7216 5306..5367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7216.15396.1prot_E_fasciculatus_S2_contig7216.15396.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7216 2725..5367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7216.15396.1

>prot_E_fasciculatus_S2_contig7216.15396.1 ID=prot_E_fasciculatus_S2_contig7216.15396.1|Name=mRNA_E_fasciculatus_S2_contig7216.15396.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
MVLEKLVHAAPTKRVIAMAVGGYITTGATIFYLSQINSSVPDTMRAEWHA
ATEDYRRYQNMDRVRSS*
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mRNA from alignment at E_fasciculatus_S2_contig7216:2725..5367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7216.15396.1 ID=mRNA_E_fasciculatus_S2_contig7216.15396.1|Name=mRNA_E_fasciculatus_S2_contig7216.15396.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2643bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7216:2725..5367- (Ectocarpus fasciculatus EfasUO2)
ATGGTGCTGGAGAAGCTCGTGCATGCCGCCCCTACGAAGAGGGTCATCGC
GATGGCGGTGGGGTAAGCCCATAACGTGTAAAATTGAGCGAGAGGATTGA
GATCCAACCGCCACCGGTATCCGTACAATACCCATGGCTGACTTCCGCAG
CCTCAGTGGTAGAGATCGGGAGACTCTGCTGTGTACGCGGTGCGTTGGTG
ACTGAGAGGAGAGAGGAACGTATCTTCTCCGTGCGGGAGAATGCCCACAG
CGCGGATCTTACCCAGCAGGTGTCCGACATATGAACATCTCGTCGATGAT
CGGTGCCGCTTATATGATGTGTCGAAAAATATTGGTCCTCGTCTGTATTG
CACTACACTATGCATCACAAACCTTTGTACACCCTGATGTTGGTCTGGTG
TTTGCTACTTGTACAATACGCGTTTTCGGGTTCTCAGTCGAATAAAGAAT
GAAGCCTGCTGACAGCCGTACAATCTCGAGGCACGATCAGCACTCTCTGA
CTGAGACCACGAGGCGTGGACTATGTTTGCCGTGCCGTTTTTATTCGCCG
ACGTCTCTGCTTCGTTTCGTGCTCATTGAGTACTCGGGTGTAACCTTCCC
TGACATTGAAATGGTGTTCTCTGTTTTGCAGGAGCACCCAGGCATGCGAA
GCTGGGCATACATGTAGATATATCCCACCACCTACCCGTACTCTACTCAA
CCAAACTCACCCCCTTGACATGGTACCTTCCGTCTCGCCCGTGCTTCCGC
AACGTTCAGAGGCTACATCACTACCGGCGCTACGATCTTCTACTTGTCCC
AGATTAATTCAAGTGAGTGTCATCGGTCAAGGCCAAGCTCTCTCTTTGGA
TATTAATATTCCGTCTTCGCGAGTTGCGTAGGGGTGTGCAGGTGCACATG
GCAGCTCAAATCCAACAGTCTCCGCGAATTTTGTTTCCACACGGCTTTGA
AATCCTACGAAAAAACGTTATGACCACGCGGCATTCACGCAAGGGAACAA
GCCATCTGCGCAAGGAAATAATGCGGAGTCAGGGGGGGGGGGGCGCCTCC
AGATGCGCGTCATGTTAGGTGGGCATTGAGGTCTGTCGCTCGGTGCGATC
TACACTTAGTGTGTGGTTTGTTTTCAAGGTAGAGCTCGTTCCTAAAAGCG
GGGTGTGCTGTAGTTTCAGGGGATGTTCGCAGGAGTGCTTAGCAAGTTCA
TGCCATGACGGAAATCGTGTGTGTGCCATCACTATTCCGGAAGTCGGTTC
TTTCTCCACCTTTCGGTGCGATTTCGGACGCAGGAGCCGGGGCCGAACAC
AGGAGGAAGCCGACGTAGTTTTCTCTGCGCCTTTTCACCTTACTTAATAG
TTTTTGTGAGCAGGATCCAGCCGTCCCTTTCCCTCGTCCATTAGTGTATG
AGTGCAAAGTTTTTCGTGAGCACGCCGAGTAGACTGGTCATGATCAACAT
TTTATCAAACCTAATGCGTGTGATTTCGCCGAGATCCAAACTCACTTTCG
AAACAACGATAGAAGATGGTGCCAATTGAACCACTTGGTTGGGCGACCAG
CTGGCCACTAGAGTTTCAGTAAATACTGTGATAAAATATGGGGAATGTTC
CAACGGGACACAGAATATTGATCGGGGTTAATGTTTCCTTGACTCAGCAC
ATATTGTACCGCAGACCCTCGGTGCAGTTTCCTGTATTCTCCGGCTGTTG
TTTTGACCATCGTGTCGCCGTCGGTACATTGACATGCCCATGCCGCACGT
TGACACTTATTGTTGATTTCAGGGGACGCATAATGTTCCTCCTATACGTG
CTGATCTGAAACCGTGCTCGCCGTCGCTCAAAATTCTGCTTACCTCGAAC
CTGTACAGGCGTACCTGACACAATGCGCGCCGAGTGGCACGCCGCCACGG
AGGACTACCGTCGGTACCAAAACGTGAGATTCGGTTCAGCAAGCCCTGGG
GGCGTGCTCCATCATATCCTGTTTTGTGTCGGAAAGCGCGGCAATCGTGG
CCTGGTCCCGCGGCCAGCACTATATATGGACGGGAAGATTGGATGTTGGA
CATGTTCTTTCCACCACCTTTACAATCATTAGAGGAATTCGTTGTTTACT
TGGCCACACTCTAAATCTTCCCCTCGCACAGGGCTAATTGACACTTTTCT
GCAGGGCCAGTAGTTTTGACCTTCCTGTGTTTCGTTCCAATGTGAAGCTT
GAATCCTGATCAAGGCTAACTCTGTCGCGCCGAGTTAAAATACTTTCTCT
CCTCTCTGGGCGTAAAATCGTGTGCGCTACATAATATAGATTTTGGTGCT
GTCCGCTCGGAAACACAGTTTCGTAGACCAGCCTAATGTAGGAGTTGTTT
GCGTCCCGGGTGAGGTCCAGCTAAGAGAGCCAAACGATGCTTCAGTGTCT
CAACGCCAACCAAACCTTAAGCAGTGCCCAGGGAAGACAGATGCGTTGTA
CGTGAACTACTTGGGCGGCAATTCTTCGCTGGAACTATCGATACGTTCAA
ACGAAGTTGGTGCACAACTCTATCGGCAGCTTTCGCATAACCTGTCACTA
ATATATCCGTTGTATCCGCAAACATCATCTTGGTCGTTCCGATCAACTAC
CATGCGTGCTCGTTTGCAGATGGACCGCGTTCGTTCCTCCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7216:2725..5367-

>mRNA_E_fasciculatus_S2_contig7216.15396.1 ID=mRNA_E_fasciculatus_S2_contig7216.15396.1|Name=mRNA_E_fasciculatus_S2_contig7216.15396.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7216:2725..5367- (Ectocarpus fasciculatus EfasUO2)
ATGGTGCTGGAGAAGCTCGTGCATGCCGCCCCTACGAAGAGGGTCATCGC
GATGGCGGTGGGAGGCTACATCACTACCGGCGCTACGATCTTCTACTTGT
CCCAGATTAATTCAAGCGTACCTGACACAATGCGCGCCGAGTGGCACGCC
GCCACGGAGGACTACCGTCGGTACCAAAACATGGACCGCGTTCGTTCCTC
CTGA
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