mRNA_E_fasciculatus_S2_contig7207.15389.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7207.15389.1
Unique NamemRNA_E_fasciculatus_S2_contig7207.15389.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7207.15389.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R5_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.970e-116
Identity = 285/574 (49.65%), Postives = 331/574 (57.67%), Query Frame = 1 
Query:    1 QGPCPVGPSSSPPRTITAPPSPPSARSRAAPAATALEGAALASDEVEEWGDLLGGELGDELLFNDE-------DMIAAFLEDDLFGEMTVGLDTTTPSTGPSAVFGQPDSVPSFPITEFDAYTIDLLAASGVISGAPGVTMPSMSVGGDGDSADGATGATDAGAALPGTQTTPPAPGPMPALRPTQPIVGKTTSSTETPAFAPSTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVSPVPTPPSLTAME-DQAIGPDVSSNTNSIHSPTFSSTAAAPFVVTTETPS-----------------------------------------------------------VAPSTDSVESTAVAARETAAAAAAARCISAVVRPGSGTPSTSKGPHPATAAGSAQRHDGDGIDDALAMAIHALKIADRAADNSRL------TQTTAQARLTTALANFTDKMSMAPPRTSATEMMDSALAACMEQLLFLEERTXXXXXXXFSDEVAVRADLGRAMMALSVERKKKKEAEVRAILGDVKKRRSERIRSAALSKVKKERDARPVWDHFSLREMWKAGEIVTL 1503
            +GP  VGP SSP  T+TAPPSPPSARS AAPA     G     D+ E  G+LLGG L D    +DE       D++AAFLEDD  GE+  GLDTT+ +T  SAV  QP SVPS P+ +FD +T++LLA+SGVISGAPGV MPS SVG   D++D ATGA+D GAALP    TPPA         T PI   T+S T  P   PS                                +P P P ++ A      I  D SS+TN  H P+ SST A+PF  TT TPS                                                             P TDSV ST   ARETAAA AA       V   + +  ++     +   G+      DGID ALAMAI ALKIADRA D+SRL      T    + RL+TALA FT+KMS A PRTSATEMMD+ALAACMEQLLFLEERTXXXXXX FSD+VAVRADLGRAMMAL+ E+KKK+EAE+RAILGDV+KRRS+RIRSAALS V++ERDARP WDHFSLREMWKAGEIVTL
Sbjct:    3 KGPYAVGPFSSPSGTVTAPPSPPSARSMAAPARNYPGG-----DDAE-LGELLGGGLHD---LDDEGWSPEDADLMAAFLEDDFSGEILFGLDTTSSTTAASAVSDQPGSVPSCPMADFDDHTLELLASSGVISGAPGVAMPSTSVGAGADASDVATGASDVGAALPRMPATPPAXXXXXXFGLTPPIATDTSSDTNVP-HPPSISSTLAAPFTSTTATPSFVSSDVGAALPRMPTTP-PAPGTMPAFGLTPPIATDTSSDTNVPHPPSISSTLASPFTSTTATPSFVSRPITDSVAAXXXXXXXXXXXXXXXITALTPPPAPTSALNNSRTFSAVTTGSTTSGPTTPRTDSVASTTADARETAAAKAAKXXXXVAVATSAPSKLSTSALAVSPVLGTPSTSTSDGIDHALAMAIQALKIADRAVDDSRLARSPETTSDNEKGRLSTALAEFTEKMSKAAPRTSATEMMDAALAACMEQLLFLEERTXXXXXXAFSDDVAVRADLGRAMMALNDEKKKKREAEIRAILGDVRKRRSKRIRSAALSNVRRERDARPAWDHFSLREMWKAGEIVTL 565
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7207.15389.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K947_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 2.000e-63
Identity = 142/221 (64.25%), Postives = 160/221 (72.40%), Query Frame = 1 
Query:  871 VAARETAAAAAAARCISA---VVRPGSGTPSTSKGPHPATAAGSAQRHDGDGIDDALAMAIHALKIADRAADNSRLTQT------TAQARLTTALANFTDKMSMAPPRTSATEMMDSALAACMEQLLFLEERTXXXXXXXFSDEVAVRADLGRAMMALSVE-RKKKKEAEVRAILGDVKKRRSERIRSAALSKVKKERDARPVWDHFSLREMWKAGEIVTL 1503
            VAA   AAA AA   +S     V P  GTPSTS                 DGI+ ALAMAI AL IA+RAAD+SRL  +        Q RL TALA +T++MSMA PRTSATEM+D+ALAACMEQLLFLEERT       FSDEVAVRADLGRAMMAL+ E RK+K+EAE+RAI+G V+KRRS+RIRSAALS V+KERDARPVWDHF LREMWKAGEIVTL
Sbjct:   45 VAAAAVAAATAAPSKLSTSAFAVSPVLGTPSTS-----------------DGINHALAMAIQALTIANRAADDSRLASSPETMSGNKQERLATALAEYTEEMSMAAPRTSATEMIDAALAACMEQLLFLEERTFAEKETAFSDEVAVRADLGRAMMALNHEKRKRKREAEIRAIIGHVRKRRSKRIRSAALSNVRKERDARPVWDHFCLREMWKAGEIVTL 248
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7207.15389.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M8_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 2.640e-63
Identity = 133/199 (66.83%), Postives = 150/199 (75.38%), Query Frame = 1 
Query:  928 VRPGSGTPSTSKGPHPATAAGSAQRHDGDGIDDALAMAIHALKIADRAADNSRLTQT------TAQARLTTALANFTDKMSMAPPRTSATEMMDSALAACMEQLLFLEERTXXXXXXXFSDEVAVRADLGRAMMALSVE-RKKKKEAEVRAILGDVKKRRSERIRSAALSKVKKERDARPVWDHFSLREMWKAGEIVTL 1503
            V P  GTPSTS                 DGI+ ALAMAI AL IA+RAAD+SRL  +        Q RL TALA +T++MSMA PRTSATEM+D+ALAACMEQLLFLEERT       FSDEVAVRADLGRAMMAL+ E RK+K+EAE+RAI+G V+KRRS+RIRSAALS V+KERDARPVWDHF LREMWKAGEIVTL
Sbjct:   65 VSPVLGTPSTS-----------------DGINHALAMAIQALTIANRAADDSRLASSPETMSGNKQERLATALAEYTEEMSMAAPRTSATEMIDAALAACMEQLLFLEERTFAEKETAFSDEVAVRADLGRAMMALNHEKRKRKREAEIRAIIGHVRKRRSKRIRSAALSNVRKERDARPVWDHFCLREMWKAGEIVTL 246
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7207.15389.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP5_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 4.240e-48
Identity = 176/508 (34.65%), Postives = 201/508 (39.57%), Query Frame = 1 
Query:    1 QGPCPVGPSSSPPRTITAPPSPPSARSRAAPAATALEGAALASDEVEEWGDLLGGELGDELLFNDE-------DMIAAFLEDDLFGEMTVGLDTTTPSTGPSAVFGQPDSVPSFPITEFDAYTIDLLAASGVISGAPGVTMPSMSVGGDGDSADGATGATDAGAALPGTQTTPPAPGPMPALRPTQPIVGKTTSSTETPAFAPSTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVSPVPTPPSLTAMEDQAIGPDVSSNTNSIHSPTFSSTAAAPFVVTTETPSVAPSTDSVESTAVAARETAAAAAAARCISAVVRPGSGTPSTSKGPHPATAAGSAQRHDGDGIDDALAMAIHALKIADRAADNSRLTQTTAQARLTTALANFTDKMSMAPPRTSATEMMDSALAACMEQLLFLEERTXXXXXXXFSDEVAVRADLGRAMMALSVERKKKKEAEVRAILGDVKKRRSERIRSAALSKVKKERDARPVWDHFSLREMWKAGEIVTL 1503
            +GP  VGP SSP  T+TAPPSPPSARS AAPA     G     D+ E  G+LLGG L D    +DE       D++AAFLEDD  GE+  GLDTT+ +T  SAV  QP SVPS P+ +FD +T++LLA+SGVISGA GV MPS SVG   D++D ATGA+D GAALP T  TPPA     A   T PI   TTS T  P                                                                 H P+ SST                                                                                                                                             LLFLEERT       FSD+VAVRADLGRAMMAL+ E+KKK+EAE+RAILGDV                    DARPVWDHFSLREMWKAGEIVTL
Sbjct:    3 KGPYAVGPFSSPSGTVTAPPSPPSARSMAAPARNDPGG-----DDAE-LGELLGGGLHD---LDDEGWSPEDADLMAAFLEDDFSGEILFGLDTTSSTTAASAVSDQPSSVPSCPMADFDDHTLELLASSGVISGASGVAMPSTSVGAGADASDVATGASDVGAALPRTPATPPAXXXXXAFGLTPPIAADTTSDTNVP-----------------------------------------------------------------HPPSISSTL--------------------------------------------------------------------------------------------------------------------------------------------LLFLEERTFVEEETAFSDDVAVRADLGRAMMALNDEKKKKREAEIRAILGDVXXXXXXXXXXXXXXXXXXXXDARPVWDHFSLREMWKAGEIVTL 296
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7207.15389.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.970e-11649.65protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.000e-6364.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.640e-6366.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.240e-4834.65protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7207contigE_fasciculatus_S2_contig7207:2466..4651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1506
Hectar predicted targeting categoryother localisation
Exons3
Cds size1506
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842384.1442263-CDS-E_fasciculatus_S2_contig7207:2465..32761696842384.1442263-CDS-E_fasciculatus_S2_contig7207:2465..3276Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7207 2466..3276 -
1696842384.154772-CDS-E_fasciculatus_S2_contig7207:3329..38011696842384.154772-CDS-E_fasciculatus_S2_contig7207:3329..3801Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7207 3330..3801 -
1696842384.1651125-CDS-E_fasciculatus_S2_contig7207:4428..46511696842384.1651125-CDS-E_fasciculatus_S2_contig7207:4428..4651Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7207 4429..4651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7207.15389.1prot_E_fasciculatus_S2_contig7207.15389.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7207 2466..4651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7207.15389.1

>prot_E_fasciculatus_S2_contig7207.15389.1 ID=prot_E_fasciculatus_S2_contig7207.15389.1|Name=mRNA_E_fasciculatus_S2_contig7207.15389.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=502bp
QGPCPVGPSSSPPRTITAPPSPPSARSRAAPAATALEGAALASDEVEEWG
DLLGGELGDELLFNDEDMIAAFLEDDLFGEMTVGLDTTTPSTGPSAVFGQ
PDSVPSFPITEFDAYTIDLLAASGVISGAPGVTMPSMSVGGDGDSADGAT
GATDAGAALPGTQTTPPAPGPMPALRPTQPIVGKTTSSTETPAFAPSTDS
VASTAVAARDSAAAAAAAASAPSKLSAIVSPVPTPPSLTAMEDQAIGPDV
SSNTNSIHSPTFSSTAAAPFVVTTETPSVAPSTDSVESTAVAARETAAAA
AAARCISAVVRPGSGTPSTSKGPHPATAAGSAQRHDGDGIDDALAMAIHA
LKIADRAADNSRLTQTTAQARLTTALANFTDKMSMAPPRTSATEMMDSAL
AACMEQLLFLEERTFVEEETAFSDEVAVRADLGRAMMALSVERKKKKEAE
VRAILGDVKKRRSERIRSAALSKVKKERDARPVWDHFSLREMWKAGEIVT
L*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7207:2466..4651-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7207.15389.1 ID=mRNA_E_fasciculatus_S2_contig7207.15389.1|Name=mRNA_E_fasciculatus_S2_contig7207.15389.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2186bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7207:2466..4651- (Ectocarpus fasciculatus EfasUO2)
CAGGGGCCCTGCCCGGTAGGACCGTCCTCTTCGCCGCCACGCACCATCAC
GGCGCCACCGTCGCCCCCCTCCGCGAGGTCAAGGGCGGCCCCCGCAGCGA
CGGCGTTGGAAGGCGCGGCGTTGGCCAGCGACGAGGTGGAGGAGTGGGGA
GACCTCCTGGGTGGTGAGCTGGGTGACGAGCTCCTCTTCAACGACGAAGA
CATGATTGCTGCATTCCTTGAAGGTGATGATAGCTACCACTAATGGTGGC
GGTCTTGAGTAACAGGATAGAGAACACAGTGTCACTAGGGCGTCGGTCGG
TCACAGGGTTACCGTTACGGATGCGGTTGCGGTGAGGGCAAGCCCCTTGG
TTAGTGGGCGTTGTCGGAGGATGCTTGTCCCGAACTATGCCCGAAAACAG
TATGGTAGAGACATGATCTTGGGACGAGAACGGACCGATCTTACGGCAAA
AACATGTAGATACTCACCCCAAGACGCCCACAATCGACATCGACTACCTA
GAATACGCTGGTTGAGATTCATCTGCAACTCTAGATGTTGGTGGTGGTGT
AGGTGTTGTGCTTTGTCCGTAAGTCTCAAGTTAACCCGAATGATGTGCGC
GAAAGCTCTCTCACGAGGCGATTATGTTCCAAGAATGATGATCGCTTAGA
ACCATGCGTGTCTCATGTTGTTTTCGTACGACGTGGTACATGTGTAGCGT
TTTTTTCTCGGTCAAGGAGGGTGGCTCGTCCTGTTTTTCTCCCTCTCTCA
CTATTTTTGTACAAGCACACACTTGGCGGGCGGTCTTATACCACCACCAC
CACCACCACCACCACCCTGATTGAACGATTTCTTCTCCTGGCCGCCGCAG
ACGATCTCTTCGGTGAAATGACGGTTGGTCTGGACACCACCACACCATCG
ACCGGGCCAAGCGCCGTATTCGGCCAGCCGGACTCTGTGCCTTCGTTCCC
TATTACAGAGTTCGATGCGTACACCATTGACCTCCTGGCAGCTTCTGGTG
TGATCTCGGGCGCGCCTGGTGTGACGATGCCGTCCATGTCTGTTGGCGGT
GATGGTGATTCTGCCGATGGTGCCACTGGTGCCACCGATGCGGGAGCGGC
ACTCCCAGGAACACAGACGACGCCGCCGGCCCCGGGGCCGATGCCCGCGC
TCAGGCCCACCCAACCGATTGTTGGCAAAACCACGTCCTCGACAGAGACA
CCTGCGTTCGCTCCGAGCACAGATTCGGTGGCGTCGACGGCAGTGGCGGC
GAGAGATTCGGCGGCGGCGGCGGCGGCGGCAGCATCAGCCCCTTCGAAGC
TTTCGGCCATCGTGAGCCCAGTGTCGGGTACGCGATCGTCATCGCCATCG
GCATCGGCATCGCATCGGCCGTGAGCCCTACACCGCCTTCTCTGACGGCG
ATGGAAGACCAAGCGATTGGCCCCGACGTGTCCTCGAACACCAACTCCAT
CCACTCACCGACCTTTTCTTCGACGGCAGCGGCACCGTTTGTTGTGACAA
CAGAGACACCTTCCGTCGCCCCCAGCACAGATTCGGTGGAGTCGACGGCA
GTGGCGGCGAGGGAAACAGCGGCGGCGGCGGCGGCGGCGCGCTGCATTTC
GGCCGTTGTGAGACCGGGGTCGGGTACCCCATCCACCAGCAAGGGCCCTC
ACCCCGCTACTGCCGCGGGAAGCGCTCAGAGGCATGACGGCGACGGCATA
GACGATGCGCTGGCCATGGCCATCCACGCTCTCAAGATCGCCGACAGAGC
AGCCGACAACAGCCGCCTGACGCAAACTACGGCGCAGGCAAGACTCACCA
CTGCTTTGGCAAACTTCACGGACAAAATGTCGATGGCTCCTCCTCGTACG
TCTGCGACGGAGATGATGGACTCCGCGTTGGCTGCATGCATGGAACAGCT
CTTGTTCCTTGAAGAGCGGACGTTTGTTGAAGAAGAGACCGCCTTCAGCG
ACGAGGTGGCGGTGCGGGCGGACCTGGGACGGGCCATGATGGCGCTCAGC
GTCGAGAGGAAGAAGAAGAAGGAGGCGGAGGTCAGGGCAATTCTCGGTGA
CGTCAAGAAGCGGCGGTCGGAACGGATCCGCTCGGCGGCGCTCTCCAAGG
TCAAGAAGGAGCGAGACGCCAGGCCGGTGTGGGACCACTTTTCCTTGAGA
GAGATGTGGAAAGCGGGTGAAATCGTGACCCTGTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7207:2466..4651-

>mRNA_E_fasciculatus_S2_contig7207.15389.1 ID=mRNA_E_fasciculatus_S2_contig7207.15389.1|Name=mRNA_E_fasciculatus_S2_contig7207.15389.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1506bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7207:2466..4651- (Ectocarpus fasciculatus EfasUO2)
CAGGGGCCCTGCCCGGTAGGACCGTCCTCTTCGCCGCCACGCACCATCAC
GGCGCCACCGTCGCCCCCCTCCGCGAGGTCAAGGGCGGCCCCCGCAGCGA
CGGCGTTGGAAGGCGCGGCGTTGGCCAGCGACGAGGTGGAGGAGTGGGGA
GACCTCCTGGGTGGTGAGCTGGGTGACGAGCTCCTCTTCAACGACGAAGA
CATGATTGCTGCATTCCTTGAAGACGATCTCTTCGGTGAAATGACGGTTG
GTCTGGACACCACCACACCATCGACCGGGCCAAGCGCCGTATTCGGCCAG
CCGGACTCTGTGCCTTCGTTCCCTATTACAGAGTTCGATGCGTACACCAT
TGACCTCCTGGCAGCTTCTGGTGTGATCTCGGGCGCGCCTGGTGTGACGA
TGCCGTCCATGTCTGTTGGCGGTGATGGTGATTCTGCCGATGGTGCCACT
GGTGCCACCGATGCGGGAGCGGCACTCCCAGGAACACAGACGACGCCGCC
GGCCCCGGGGCCGATGCCCGCGCTCAGGCCCACCCAACCGATTGTTGGCA
AAACCACGTCCTCGACAGAGACACCTGCGTTCGCTCCGAGCACAGATTCG
GTGGCGTCGACGGCAGTGGCGGCGAGAGATTCGGCGGCGGCGGCGGCGGC
GGCAGCATCAGCCCCTTCGAAGCTTTCGGCCATCGTGAGCCCAGTCCCTA
CACCGCCTTCTCTGACGGCGATGGAAGACCAAGCGATTGGCCCCGACGTG
TCCTCGAACACCAACTCCATCCACTCACCGACCTTTTCTTCGACGGCAGC
GGCACCGTTTGTTGTGACAACAGAGACACCTTCCGTCGCCCCCAGCACAG
ATTCGGTGGAGTCGACGGCAGTGGCGGCGAGGGAAACAGCGGCGGCGGCG
GCGGCGGCGCGCTGCATTTCGGCCGTTGTGAGACCGGGGTCGGGTACCCC
ATCCACCAGCAAGGGCCCTCACCCCGCTACTGCCGCGGGAAGCGCTCAGA
GGCATGACGGCGACGGCATAGACGATGCGCTGGCCATGGCCATCCACGCT
CTCAAGATCGCCGACAGAGCAGCCGACAACAGCCGCCTGACGCAAACTAC
GGCGCAGGCAAGACTCACCACTGCTTTGGCAAACTTCACGGACAAAATGT
CGATGGCTCCTCCTCGTACGTCTGCGACGGAGATGATGGACTCCGCGTTG
GCTGCATGCATGGAACAGCTCTTGTTCCTTGAAGAGCGGACGTTTGTTGA
AGAAGAGACCGCCTTCAGCGACGAGGTGGCGGTGCGGGCGGACCTGGGAC
GGGCCATGATGGCGCTCAGCGTCGAGAGGAAGAAGAAGAAGGAGGCGGAG
GTCAGGGCAATTCTCGGTGACGTCAAGAAGCGGCGGTCGGAACGGATCCG
CTCGGCGGCGCTCTCCAAGGTCAAGAAGGAGCGAGACGCCAGGCCGGTGT
GGGACCACTTTTCCTTGAGAGAGATGTGGAAAGCGGGTGAAATCGTGACC
CTGTGA
back to top