mRNA_E_fasciculatus_S2_contig7205.15386.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7205.15386.1 vs.
Match: NTP_transf_2 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G847_ECTSI) HSP 1 Score: 1211 bits (3133), Expect = 0.000e+0 Identity = 942/1516 (62.14%), Postives = 965/1516 (63.65%), Query Frame = 1
Query: 1 GAEHPRCS--GIPANPLAPVAREAGILRGYWRTLPLRQRQEILEGLPEAAALASDSCDSTV---STSNGRSRAREDVVQCLMFAPVAWCCQDDGAAVKLVVGRLRRDYGDHVAAVD-KAAPAIEAPALETGTSSDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAPVVSPPISGATLLGEGGVAAQPGDGAAARPPGRTSPGPSECSSAPEEAKTETDSSVGANGTPSASKSAXXXXXXXXXXXXXXXXXXXXXXEGGDDGGWVLSTSRRSKPKEAKEEVREVRRGSGGSKSTKG---KDGGSHPKATAGHRESLRDSHREPYRDRGDAPSRGSKGSSGGSGEGRHDRDSSGGGGAPWARGTSRQDSGKGDEGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGLGSGSG--AXXXXXXXRREDRDVEASWVKGVEEDALPWAKRGGSGKSSSSSGSSAKENGHAPSXXXXXXXXPQHTRTRSSSFADMVRGANAADGAPSAVSPLRKVVSAKSPRVASTLEATTPSWGSGKSGGAPSFATVLLGXXXXXXXXXXXXXXXALKAVDTKVSASAVSPSTTVSASPITASEAAGWSDTPAPAAVASAATGGAKPAASKPMAWTTGNTASVLRAAMGEPATSRNTSSSHKVPQDQASAPGGGSDGGEGKAAEPGKNPPTGKSGG----ASPKAGEVMDVMVEVLDLVGDVIVRRAHSRASKAKSYAQAIAESEGRAQALATAYQRHDGLLQGSSWEGGGSANKHTAGTSDATDSVAXXXXXXXXXXXSSPAVGAAESDTQPDPEGEEGGSVLENSVPVLALSPDNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRSRPSAXXXXXXXXXXXXXXXXXXXXXXXXXSKAWSDRGPERDRGSNAASWARGNTPPAAARQAARRAGGDTGRAWVRSGQXXXXXXXXXXXXXQALGSGGHPGAAPMHDLRGARSRGHKPAVPSAPPQQMQQXXXHQGMGDVSEEGRGSAATLLLPRAPAALRTSTSAPLGRDAAADGSNDALSRGGLNTQPDVNNVIPSPRILRSPSRRHRPRSSSAGSGTRHSGMHGAXXXXXXYHPYPQXXXXX----QESWQNSSDWALSAGGLAGGNXXXXPRGVRXXXXXXXXXXXXXXXXXXXXXXARDGEAGRSQYPYRDDGNLYRAPSPHSAGXXXXXRHPRQEQGGHNRPGRGSLHRPAEAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGGAGNELSMADRRADRMEYEYNLMVSCLDRNVERFMQKLGRAMRPRRRAWSQVIARVRELVAGIWKEAKVEMYGSCFTGLELPSSDVDVVVCGINGLKYSYGGSRAGYSSMQTVANLQKLANVLQEQTWVRGMKV 4491
G PR S GIP +PLA VA+EAGILRGYWRTLPLRQR +ILEGLPEAAALASDSCDST S+S+ RSRAREDVVQCLMFAP AWC QDDGAAVKLVVGRLRR YG HVAA KA PAIE+PALE GTSSD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EA V +PP+SGA LGE GVAAQ DGAAARP G TSPGPSE SSA EEA ETDSSVGAN TPSAS SA XXXXXXXXXXXXXXX G DDGGWVLSTSRRSKPKEA KDGGSHPKATAGHRESLRDSHREPYRDRGDAPSRGSKGSSGGSGEGRHDRDSSGGGGAPWARGTSRQDSGKGDEGR X A RREDRDVEASWV+G EEDA PWAKRG SSAKENGHAPS PQHTRTRSSSFADMVRGANAADG PSAVSPLRK VSAKSPRVAST EATTPSWGSGKS GAPSFATVLLG ALKAVDTK SASAVSPSTTVSASP+TASE AGWSDTPAPAA +A G KPA KPMAWTTGNTASVLRAA+GEPA SRNTSS HKVPQD+AS+PG GS+G EGKAAE GK+PPTGK ASPKAGEVMDVMVEVLDLVGDVIVRRAHSRASKAKSYAQAIAESEGRAQALATAYQRHDGLLQGSSWEGGGSANKH AGTSDATDS XXXXXXXXXXXSSPAV R R A XXXXXXXX SKAWSDRGPERDRGSNAASWARGNTPPAAARQAARRAGGDTGRAWVRSGQ Q LGSGGHPGAAPMHDLRGARSRGHKPA+PSAPP Q HQGMG+VSEEGRGSAA+LLLPRAPAALR S SAPLGRDAAADGS+DALSRG L TQPDV+NVIPSPRILRSPSRRHRPRSSSAGSGTRHSGMHG XXXXX XXXXX QESWQNSSDWALSAGG GG PRGVR FMQKLGRAMRPRRRAWSQVIARVRELV+GIWKEA+VEMYGSCFTGLELPSSDVDVVVCGINGLKYSYGGSRAGYSSMQTVANLQKLANVLQEQTWVRGMKV
Sbjct: 343 GRRRPRGSVGGIPVSPLASVAQEAGILRGYWRTLPLRQRHQILEGLPEAAALASDSCDSTARNSSSSSSRSRAREDVVQCLMFAPAAWCFQDDGAAVKLVVGRLRRAYGAHVAAAGVKATPAIESPALEPGTSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAG--------EASVENPPVSGAKSLGERGVAAQADDGAAARPAGETSPGPSEGSSATEEA--ETDSSVGANVTPSASTSATAXXXXXXXXXXXXXXXESVAG-GIDDGGWVLSTSRRSKPKEAXXXXXXXXXXXXXXXXXXXXXXKDGGSHPKATAGHRESLRDSHREPYRDRGDAPSRGSKGSSGGSGEGRHDRDSSGGGGAPWARGTSRQDSGKGDEGRVWGKDISTRDRRDDPGGTWSKSGGSRRERRDGSXXXXXXXXXXXXXAWPRASARRREDRDVEASWVQGGEEDAGPWAKRGXXXXXXXXXXSSAKENGHAPSAAGRSANQPQHTRTRSSSFADMVRGANAADGVPSAVSPLRKAVSAKSPRVASTPEATTPSWGSGKSVGAPSFATVLLGGSGATSGSSKFPPPPALKAVDTKGSASAVSPSTTVSASPVTASEQAGWSDTPAPAAAEAA---GPKPA--KPMAWTTGNTASVLRAAIGEPAPSRNTSSGHKVPQDRASSPGSGSEGCEGKAAEAGKSPPTGKXXXXXXXASPKAGEVMDVMVEVLDLVGDVIVRRAHSRASKAKSYAQAIAESEGRAQALATAYQRHDGLLQGSSWEGGGSANKHAAGTSDATDSXXXXXXXXXXXXXSSPAVE-------------------------------------------------------------------------------------------------------------------------------------------RRRAGAPSFDSGXXXXXXXX-----------SKAWSDRGPERDRGSNAASWARGNTPPAAARQAARRAGGDTGRAWVRSGQQQQ----------QGLGSGGHPGAAPMHDLRGARSRGHKPAMPSAPPPQQMPHNQHQGMGEVSEEGRGSAASLLLPRAPAALRASMSAPLGRDAAADGSSDALSRGALTTQPDVSNVIPSPRILRSPSRRHRPRSSSAGSGTRHSGMHGGAXXXXXXXXXXXXXXXXXXXXQESWQNSSDWALSAGGNGGG----APRGVR----------------------------------------------------------------------------------------------------------------------------------------------------FMQKLGRAMRPRRRAWSQVIARVRELVSGIWKEARVEMYGSCFTGLELPSSDVDVVVCGINGLKYSYGGSRAGYSSMQTVANLQKLANVLQEQTWVRGMKV 1530
BLAST of mRNA_E_fasciculatus_S2_contig7205.15386.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K4_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.830e-23 Identity = 65/122 (53.28%), Postives = 84/122 (68.85%), Query Frame = 1
Query: 4135 MEYEYN--LMVSCLDRNVERFMQKLGRAMRPRRRAWSQVIARVRELVAGIWKEAKVEMYGSCFTGLELPSSDVDVVVCGINGLKYSYGGS-RAGYSSMQTVANLQKLANVLQEQTWVRGMKV 4491
MEY ++ +V LD N+ FM K R +RPRRRAW +V+ VR++VAG+W EA+V+ YGS +TGLELPSSDVDVVV I G +Y+YG A Y +TV +L +LA L+ Q WV GMKV
Sbjct: 1566 MEYRFDEVALVRRLDENIADFMAKRARVLRPRRRAWGKVMELVRDVVAGVWIEAEVQPYGSVYTGLELPSSDVDVVVGNIGGRRYTYGAKGNAPYHPEETVQHLLQLAAALKGQPWVHGMKV 1687
BLAST of mRNA_E_fasciculatus_S2_contig7205.15386.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y619_HETAK) HSP 1 Score: 77.0 bits (188), Expect = 7.800e-13 Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 4153 LMVSCLDRNVERFMQKLGRAMRPRRRAWSQVIARVRELVAGIWK-EAKVEMYGSCFTGLELPSSDVDVVVCGI 4368
LM+ L R++ F+ K+ RAMRPRR A ++V+ RVR L G+W EA++ YGSC TGL+LPSSDVD+VV G+
Sbjct: 42 LMLRKLTRDIHDFLAKVRRAMRPRRAARARVLRRVRRLADGLWGGEARLRCYGSCLTGLDLPSSDVDIVVEGL 114
BLAST of mRNA_E_fasciculatus_S2_contig7205.15386.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7S5_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.670e-9 Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 4117 DRRADRMEYEYNLMVSCLDRNVERFMQKLGRAMRPRRRAWSQVIARVRELVAGIWKEAKVEMYGSCFTGLELPSSDVDVVVCGIN 4371
+RR M + L +V F+ L RAM +RRA + V+ V E GIW A+ +YGSC TGL+LPSSDVDVVV G+N
Sbjct: 8 ERRVXXXXXXXXXMRARLAHDVNDFVACLERAMVHQRRARTAVLDSVSETARGIWAHAECSLYGSCLTGLDLPSSDVDVVVRGLN 92
BLAST of mRNA_E_fasciculatus_S2_contig7205.15386.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y952_AURAN) HSP 1 Score: 72.0 bits (175), Expect = 9.740e-9 Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 4120 RRADRMEYEYNLMVSCLDRNVERFMQKLGRAMRPRRRAWSQVIARVRELVAGIWKEAKVEMYGSCFTGLELPSSDVDVVVCGIN 4371
RR E M S L + F+ L RAM P+RRA + V+ V ++V IW A+ +YGSC TGL+LPSSDVDVVV G+N
Sbjct: 572 RRVVEHETRVRAMRSRLAYDANDFVASLERAMAPQRRARTAVLDEVSQVVRSIWSHAECSLYGSCLTGLDLPSSDVDVVVRGLN 655
BLAST of mRNA_E_fasciculatus_S2_contig7205.15386.1 vs.
Match: Poly (rna polymerase (Fragment) n=5 Tax=Monodopsidaceae TaxID=425072 RepID=I2CR29_NANGC) HSP 1 Score: 70.1 bits (170), Expect = 4.050e-8 Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 4099 NELSMADRRADRMEYEYN----LMVSCLDRNVERFMQKLGRAMRPRRRAWSQVIARVRELVAGIWKEAKVEMYGSCFTGLELPSSDVDVVVCGI 4368
+EL D A++ YN M S L N+ FM+ M R A +++ VR ++ +W ++VE+YGSCFTGL+L SSD+D+VVCG+
Sbjct: 966 HELYALDMEAEQARLAYNQGIDAMRSQLSENIADFMKNRETKMMEHRAARERILEEVRSIIQSLWAGSRVELYGSCFTGLDLISSDLDLVVCGL 1059
BLAST of mRNA_E_fasciculatus_S2_contig7205.15386.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRI7_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 4.420e-7 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 4156 MVSCLDRNVERFMQKLGRAMRPRRRAWSQVIARVRELVAGIWKEAKVEMYGSCFTGLELPSSDVDVVVCGIN 4371
M + L +V F+ L RAM +RRA + V+ V E GIW A+ +YGSC TGL+LPSSDVDVVV G+N
Sbjct: 318 MRARLAHDVNDFVACLERAMVHQRRARTAVLDSVSETARGIWAHAECSLYGSCLTGLDLPSSDVDVVVRGLN 389
BLAST of mRNA_E_fasciculatus_S2_contig7205.15386.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8PC66_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 4.320e-6 Identity = 47/135 (34.81%), Postives = 70/135 (51.85%), Query Frame = 1
Query: 4147 YNLMVSC--LDRNVERFMQKLGRAMRPRRRAWSQVIARVRELVAGIWK-EAKVEMYGSCFTGLELPSSDVDVVVCGI-------NGLKYSYGGSRAGYS-----------SMQTVANLQKLANVLQEQTWVRGMK 4488
Y+L+ C L R++ FM + A+ +RR S +++ ++E VA IW VEMYGSC T L+LPSSD+DVVVCG+ + KYS G S + A + +LA+ L+ + W +K
Sbjct: 167 YHLLDVCDRLSRDMSAFMGRRAVALATKRRERSFLLSSLQETVAQIWPARCHVEMYGSCATQLDLPSSDLDVVVCGLPPPKPPKHKKKYSTATGNNGASIGNGFDYNYHITTGAGARIMRLASELERKPWAVQIK 301
BLAST of mRNA_E_fasciculatus_S2_contig7205.15386.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGE0_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 4.770e-6 Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 4153 LMVSCLDRNVERFMQKLGRAMRPRRRAWSQVIARVRELVAGIWKEAKVEMYGSCFTGLELPSSDVDVVV 4359
L+ L+ ++ F ++ M RR QVI VR+++ IW++A+V +YGSC TGL+LP+SDVD+VV
Sbjct: 151 LLPYFLNEDIHAFFRRWNEEMESIRRIRCQVIRNVRDVLESIWEDAEVHLYGSCCTGLDLPTSDVDIVV 219
BLAST of mRNA_E_fasciculatus_S2_contig7205.15386.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W0F9_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 4.830e-6 Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 4147 YNLMVSC--LDRNVERFMQKLGRAMRPRRRAWSQVIARVRELVAGIWK-EAKVEMYGSCFTGLELPSSDVDVVVCGIN 4371
Y+L+ C L ++ FM K A+ RRR ++A ++E V IW VEMYGSC T L+LPSSD+DVVVCG++
Sbjct: 386 YHLLDVCDRLSDDMNSFMHKRSLALNVRRRERGVLLASLQETVQNIWSGRCHVEMYGSCATQLDLPSSDLDVVVCGLD 463 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7205.15386.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7205.15386.1 >prot_E_fasciculatus_S2_contig7205.15386.1 ID=prot_E_fasciculatus_S2_contig7205.15386.1|Name=mRNA_E_fasciculatus_S2_contig7205.15386.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1502bp GAEHPRCSGIPANPLAPVAREAGILRGYWRTLPLRQRQEILEGLPEAAALback to top mRNA from alignment at E_fasciculatus_S2_contig7205:950..7571- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7205.15386.1 ID=mRNA_E_fasciculatus_S2_contig7205.15386.1|Name=mRNA_E_fasciculatus_S2_contig7205.15386.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6622bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7205:950..7571- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7205:950..7571- >mRNA_E_fasciculatus_S2_contig7205.15386.1 ID=mRNA_E_fasciculatus_S2_contig7205.15386.1|Name=mRNA_E_fasciculatus_S2_contig7205.15386.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=4506bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7205:950..7571- (Ectocarpus fasciculatus EfasUO2)back to top |