mRNA_E_fasciculatus_S2_contig7198.15375.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7198.15375.1
Unique NamemRNA_E_fasciculatus_S2_contig7198.15375.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7198.15375.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB4_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 3.080e-97
Identity = 146/165 (88.48%), Postives = 154/165 (93.33%), Query Frame = 1 
Query:   43 AHRTGGWDSLEPDDKWGGGAVLFVDKVALPMVEVAIGLMKVMIDDEELDNMSMAIKRVRRWAVLEKGGSSNNVFQKEFFRRMFLWAHGDGQNLEGCFEITMETIGSADYEALACPYLKPGAREGPDDDSCDEVPETLAPANSMLSDGDNGSDVGSDGVAMEEVST 537
            AHRTGGWDSLEPDD WGGG VLFVDKVALPMVEVAIGLMKV+IDDEELDNM+MAIKRVRRWAVLEKGGSSN VFQKEFFRR+FLWAHG  QNLEGC +ITMETIG  DYEALACPYLKPGAR+GPD DSCDEVPETLAPANSMLSDGD+GSD  ++GVAMEEVST
Sbjct:  334 AHRTGGWDSLEPDDVWGGGTVLFVDKVALPMVEVAIGLMKVIIDDEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHGASQNLEGCLDITMETIGCTDYEALACPYLKPGARKGPDVDSCDEVPETLAPANSMLSDGDDGSDSDAEGVAMEEVST 498
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BLAST of mRNA_E_fasciculatus_S2_contig7198.15375.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI40_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 1.400e-72
Identity = 110/127 (86.61%), Postives = 118/127 (92.91%), Query Frame = 1 
Query:  157 MKVMIDDEELDNMSMAIKRVRRWAVLEKGGSSNNVFQKEFFRRMFLWAHGDGQNLEGCFEITMETIGSADYEALACPYLKPGAREGPDDDSCDEVPETLAPANSMLSDGDNGSDVGSDGVAMEEVST 537
            MKV+IDDEELDNM+MAIKRVRRWAVLEKGGSSN VFQKEFFRR+FLWAHG GQNLEGC +ITMETIG  DYEALACPYLKPGAR+GPD DSCDEVPETLAPANSMLS GD+GSD  ++GVAMEEVST
Sbjct:    1 MKVIIDDEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHGGGQNLEGCLDITMETIGCTDYEALACPYLKPGARKGPDVDSCDEVPETLAPANSMLSGGDDGSDGDAEGVAMEEVST 127
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7198.15375.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI2_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 5.070e-11
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 MRILVGSILELPLQAHRTGGWDSLEPDDKWGGG 99
            MRILVG+IL+LPLQAHRTGGWDS EPDD WGGG
Sbjct:  163 MRILVGAILDLPLQAHRTGGWDSFEPDDVWGGG 195
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7198.15375.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N5_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.720e-7
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  118 KVALPMVEVAIGLMKVMIDD-EELDNMSMAIKRVRRWAVLEKGGSSNNVFQKE 273
            +V LP++E+AI  MKV+ DD +  D  S    RV RWA+LE+GGS N VFQKE
Sbjct:   12 EVVLPLLELAIQQMKVLPDDGDSTDAFSKTRSRVNRWAILERGGSPNQVFQKE 64
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7198.15375.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized3.080e-9788.48protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.400e-7286.61protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.070e-1187.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.720e-754.72protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7198contigE_fasciculatus_S2_contig7198:5573..7114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size540
Hectar predicted targeting categoryother localisation
Exons4
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842382.6856754-CDS-E_fasciculatus_S2_contig7198:5572..57121696842382.6856754-CDS-E_fasciculatus_S2_contig7198:5572..5712Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7198 5573..5712 -
1696842382.6951408-CDS-E_fasciculatus_S2_contig7198:6148..62761696842382.6951408-CDS-E_fasciculatus_S2_contig7198:6148..6276Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7198 6149..6276 -
1696842382.7041523-CDS-E_fasciculatus_S2_contig7198:6571..67231696842382.7041523-CDS-E_fasciculatus_S2_contig7198:6571..6723Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7198 6572..6723 -
1696842382.7122893-CDS-E_fasciculatus_S2_contig7198:6994..71141696842382.7122893-CDS-E_fasciculatus_S2_contig7198:6994..7114Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7198 6995..7114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7198.15375.1prot_E_fasciculatus_S2_contig7198.15375.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7198 5573..7114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7198.15375.1

>prot_E_fasciculatus_S2_contig7198.15375.1 ID=prot_E_fasciculatus_S2_contig7198.15375.1|Name=mRNA_E_fasciculatus_S2_contig7198.15375.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=180bp
MRILVGSILELPLQAHRTGGWDSLEPDDKWGGGAVLFVDKVALPMVEVAI
GLMKVMIDDEELDNMSMAIKRVRRWAVLEKGGSSNNVFQKEFFRRMFLWA
HGDGQNLEGCFEITMETIGSADYEALACPYLKPGAREGPDDDSCDEVPET
LAPANSMLSDGDNGSDVGSDGVAMEEVST*
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mRNA from alignment at E_fasciculatus_S2_contig7198:5573..7114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7198.15375.1 ID=mRNA_E_fasciculatus_S2_contig7198.15375.1|Name=mRNA_E_fasciculatus_S2_contig7198.15375.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1542bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7198:5573..7114- (Ectocarpus fasciculatus EfasUO2)
ATGCGCATCTTAGTCGGATCCATCCTCGAATTGCCCCTTCAGGCCCACAG
GACGGGAGGGTGGGATTCCTTGGAGCCGGACGACAAATGGGGGGGGGGGG
CTGTCCTGTTCGTTGACAAGGTGTGCACAAATTTGGACAGCCTAGCGTGT
AGCCTTTTCAGCCATGTATTAAAATTTCGTTAGGTCATGACTTGAAGACC
GTGCAAGTTTGGACAGCCTAGCGTGTAGCCGGTGCAGCCACGCCTTGATT
TCCCCTGTCTCATGACTTGAAGATCGGTGTTTATAATGTCCTCGATGCCG
CGTACTCCGTTCGGTCGCCGCGTGTGATGCATTCTATTATTCTACTCACA
CCTACTCCCTACACCTCTCGTTCATGCCGGACCTCGCACAGGTAGCCCTG
CCAATGGTGGAGGTGGCCATCGGGCTGATGAAGGTGATGATCGACGACGA
GGAGTTGGACAACATGTCCATGGCCATCAAGCGGGTCAGACGCTGGGCCG
TGCTCGAGAAGGGCGGGTCGTCCAATAACGTGTTCCAGAAAGAGTGAGTG
CAACGTAGGTCCGGCGTGTAGGCAACGTTAGACCACCCAGATATAACATG
GACTTTTGTTTAGTGTGTGTGTGCGTGCGTCCGTTGGACCAAGCTTGTGT
TCCCTCACGCCCTTGACATGTGGGAGACAATTTAGTCCACACCGGTCCTT
CCCAGCAGCAAAATGTGTTTGTGTGATCAACATTACTCTGTCGTCCTACA
ATCAGTGTATTTCACCGGTGGTGCATGTCCTGACACCTCCCTCTTCTTGT
CTACTCTGCCCCCCTCCGTCTCGCCAACTATCCTGCAGGTTCTTTCGGCG
CATGTTCCTGTGGGCGCATGGAGATGGCCAGAACCTGGAGGGCTGCTTCG
AAATCACGATGGAGACGATCGGCAGCGCCGATTACGAGGCACTAGCCTGC
CCGTACCTCAAGCCGGGTACGCTTTTCAAGTTTTACTAAGCACAGTGTTC
TTTCACCAAGATTCTTTTTAATGCCTACTGGGCTAGATATGGATCTTGGG
AGGGGTGGTGGGGTGGGTTGGTTCGTCTGCGTGGGACTGCTGTGCAAACC
TGATCCATTGTTTTAGTAACCCTTTCACACAAAAAGGACGCATCTGCTAC
TTTTGTCGCGTTCGCTTTTGTACCCCTGCGTGCAAGTGACGAAGAATTTC
ACCTCCTGTGTACTTGTATAGGGCTTTTGTGGTGCATGTGATGCTTGTTT
ACATGGTAACGGACGCGTCCTGCGACAGGCACATTGGTCAGCTCTCCTAA
CCCGTTCCAATCTTCAATACAATTTTGTACGCGCGACTATACTCCGTCCT
TCATCTTCCGATTGTTCTCCTTGTGGTGTCCTCAAACTTGAACATGTGGC
AGGTGCACGCGAGGGCCCCGACGATGACTCCTGTGACGAGGTGCCCGAGA
CCCTCGCCCCCGCCAACTCCATGCTCTCTGATGGTGACAACGGCTCTGAC
GTTGGCTCGGACGGTGTGGCCATGGAGGAGGTTTCGACCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7198:5573..7114-

>mRNA_E_fasciculatus_S2_contig7198.15375.1 ID=mRNA_E_fasciculatus_S2_contig7198.15375.1|Name=mRNA_E_fasciculatus_S2_contig7198.15375.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=540bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7198:5573..7114- (Ectocarpus fasciculatus EfasUO2)
ATGCGCATCTTAGTCGGATCCATCCTCGAATTGCCCCTTCAGGCCCACAG
GACGGGAGGGTGGGATTCCTTGGAGCCGGACGACAAATGGGGGGGGGGGG
CTGTCCTGTTCGTTGACAAGGTAGCCCTGCCAATGGTGGAGGTGGCCATC
GGGCTGATGAAGGTGATGATCGACGACGAGGAGTTGGACAACATGTCCAT
GGCCATCAAGCGGGTCAGACGCTGGGCCGTGCTCGAGAAGGGCGGGTCGT
CCAATAACGTGTTCCAGAAAGAGTTCTTTCGGCGCATGTTCCTGTGGGCG
CATGGAGATGGCCAGAACCTGGAGGGCTGCTTCGAAATCACGATGGAGAC
GATCGGCAGCGCCGATTACGAGGCACTAGCCTGCCCGTACCTCAAGCCGG
GTGCACGCGAGGGCCCCGACGATGACTCCTGTGACGAGGTGCCCGAGACC
CTCGCCCCCGCCAACTCCATGCTCTCTGATGGTGACAACGGCTCTGACGT
TGGCTCGGACGGTGTGGCCATGGAGGAGGTTTCGACCTGA
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