mRNA_E_fasciculatus_S2_contig7196.15373.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7196.15373.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ8_ECTSI) HSP 1 Score: 468 bits (1205), Expect = 1.280e-148 Identity = 262/460 (56.96%), Postives = 315/460 (68.48%), Query Frame = 1
Query: 4 PPLAAASTLHMSGVGDTLSERSGDGSHAGIGGDRAGSRPDVI----VRLPCQGEIVDPLHKFLPFFRDHFGVTVTHDPSESAFCISRKAPESLSSRVAADCLEQGLRLCGDDDMKPADFLLLRARFPSARDPDGSQYLLPLEAASGLPKKPRDLGDHHGVTIDYMPSRSVELGSGDGVSGGDDGLPEYLCCPRVDTDDI---HTAVLQIWGLRHCVFSAYARVVALMTNRIEYVVKLGPVGAKAPGE-----RSASYIPHGGPEGQVRTWGSIHA-GDGNLRKILEYISETLPDHVQWVDMKCTGAMRALSMPGAVVKIARASGIDNSHVRVTPLLQHQRMLVQVLKVGGDRAAIQRMRTFVEEYVEKWRGQRVIVPVTSDLILKAVAHVSSSGVTGLVSKGDSRGIFAAKLSEDVGERLWLDGFHLTARVDPVRRDNVQAKLETELAQPYFDPVCVATL 1344
PP AA+S+ HM+ +GDTL R+ +GSHAGI GDRAGSRP+ I VRLPCQGE D + F PFFRDHF VT+ H P ESA IS KA + + VAA+C E GLR+C DD++K ADFLLLRAR SARDPDGSQYLLPLE + L ++ RDLGD +GV I+ +P+RSV LGS GLPEYLCCP VDTDD H V+QIWGLR CV A+ RVVA + + +EYVVKLG VGA ++ Y GG G VR G H D N+ +L+ + E LPD VQ VDMK TGAMRALS P A+ +IA+ASGID S VRVTP Q++ ML+QVLK+GGDR AIQ M TF+E V++WRGQR++V +T+++I KA SSG G F A LSE++GE LWLDGF LTARVDP RD+ QAKLET +AQP DPVCVATL
Sbjct: 1032 PPSAASSSSHMNDIGDTLPGRAENGSHAGIDGDRAGSRPEAIHTSEVRLPCQGETADAVRDFSPFFRDHFDVTIRHVPLESAVYISGKAEDGVV-HVAAECFEHGLRVCRDDEVKAADFLLLRARVRSARDPDGSQYLLPLEVSIKLRRRLRDLGDLYGVVINSVPARSVGLGSXXXXXXXXXGLPEYLCCPGVDTDDNTQDHRKVVQIWGLRDCVVGAFDRVVASLLDNMEYVVKLGSVGADELKRLRFKGKNVKYFTEGGVTG-VRISGRPHLFADANVSTVLQSLPERLPDKVQCVDMKYTGAMRALSRPWAIDEIAQASGIDQSQVRVTPQWQNKCMLLQVLKLGGDRGAIQGMCTFLEGRVKEWRGQRLVVTLTAEIIDKARKRFFSSGSAGGFHFSS---FFVASLSEEIGEHLWLDGFQLTARVDPDDRDSAQAKLETMVAQPRCDPVCVATL 1486
BLAST of mRNA_E_fasciculatus_S2_contig7196.15373.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR78_9PHAE) HSP 1 Score: 439 bits (1128), Expect = 3.020e-136 Identity = 251/457 (54.92%), Postives = 310/457 (67.83%), Query Frame = 1
Query: 4 PPLAAASTLHMSGVGDTLSERSGDGSHAGIGGDRAGSRPDVI----VRLPCQGEIVDPLHKFLPFFRDHFGVTVTHDPSESAFCISRKAPESLSSRVAADCLEQGLRLCGDDDMKPADFLLLRARFPSARDPDGSQYLLPLEAASGLPKKPRDLGDHHGVTIDYMPSRSVELGSGDGVSGGDDGLPEYLCCPRVDTDDI---HTAVLQIWGLRHCVFSAYARVVALMTNRIEYVVKLGPVGA-KAPGER----SASYIPHGGPEGQVRTWGSIHAGDGNLRKILEYISETLPDHVQWVDMKCTGAMRALSMPGAVVKIARASGIDNSHVRVTPLLQHQRMLVQVLKVGGDRAAIQRMR-------------TFVEEYVEKWRGQRVIVPVTSDLILKAVAHVSSSGVTGLVSKGDSRGIFAAKLSEDVGERLWLDGFHLTARVDPVRRDNVQAKLET 1299
PP AAAS+ +M+ +GDTL ER+G+GSHAGI GDR GSRP+ I +RLP QGE D + FLPFFRDHF VT+ + PSESA CI KAP+ + + VAA+C E GLRLC D+D+K ADFLLLRAR S RDPDGSQYLLPLE ++ L +K RDLGD +GV I+ +PSRS LGSG LP+Y+CCPRVDT+D H V+QIWGLR+CV A+ RVVA + + EYVVKLGPVGA + G R + + GG +VR G H D N+ +L+ + E LPD VQ VDMKCTGAMRA S P A+ +IARASGID S VRVTP Q++ ML+QVLK+GGDR AIQ M TF+E V++WRG+R++V +T+++I KA SSG G + F A LSE++GE LWLDGF LTAR DP RD+ QAKLET
Sbjct: 1161 PPSAAASSSNMNDLGDTLPERAGNGSHAGIDGDRTGSRPEAIRTSDLRLPYQGETADAVRDFLPFFRDHFDVTIRNVPSESAVCIG-KAPDGVVN-VAAECFEHGLRLCRDNDVKAADFLLLRARVRSTRDPDGSQYLLPLEVSAKLRRKLRDLGDRYGVVINGVPSRSEGLGSGXXXXXXX-XLPKYVCCPRVDTEDNTQDHRKVVQIWGLRNCVVGAFDRVVASLLDNTEYVVKLGPVGADELKGLRFKGKNVNCFTEGGVT-EVRISGRPHLADANISTVLQSMPEVLPDQVQCVDMKCTGAMRAFSRPWAIDEIARASGIDQSQVRVTPQWQNKCMLLQVLKLGGDRGAIQGMSAYLNLKGLNEIRCTFLEGRVKEWRGRRLVVTLTAEIIDKARKCFFSSGSAG---EFHFCSFFVASLSEEIGEDLWLDGFQLTARADPDDRDSAQAKLET 1610
BLAST of mRNA_E_fasciculatus_S2_contig7196.15373.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ16_ECTSI) HSP 1 Score: 162 bits (410), Expect = 5.530e-40 Identity = 126/402 (31.34%), Postives = 181/402 (45.02%), Query Frame = 1
Query: 166 LHKFLPFFRDHFGVTVTHDPSESAFCISRKAPESLSSRVAADCLEQGLRLCGDDDMKPADFLLLRARFP-SARDPDGSQYLLPLEAASGLPKKPRDLGDHHGVTIDYMPSRSVELGSGDGVSGGDDG------------LPEYLCCPRVDTDDIHTA---VLQIWGLRHCVFSAYARVVALMTNR-----IEYVVKLGPVGAKAPGERSASYIPHGGPEGQV-RTWGSIHAGDGNLRKILEYISETLPDHVQWVDMKCTGAMRALSMPGAVVKIARASGIDNSHVRVTPLLQHQRMLVQVLKVGGDRAAIQRMRTFVEEYVEKWRGQRVIVPVTSDLILKAVAHVSSSGVTGLVSKGDSRGIFAAKLSEDVGERLWLDGFHLTARV-DPVRRDNVQAKLETE 1302
L FL FFR FG + D S + + + ++ A LE GLR+C ++ +KP +F LLRAR + D ++L + + D HG+ D +P + + V GG G LPEY P D D + + V Q+WGL V A+ +V+ TNR +E G + P + GQV G D + E +SE +PD +Q VDMK TGAMR ++ AV ++ARA G D +++ + ++VQ+ GG+ +Q M + V +WR Q V V ++ L+ KA + V G V D R F LSE VG LWLDG L +V DP + + QAKLETE
Sbjct: 301 LESFLAFFRACFGEDIVRDSENSLVSVVERG-DCRTTESVARYLEHGLRVCREEGVKPCEFSLLRARSALTGETEDADLHVLCRTKGMATARSLCKISDCHGICADLVPPTVLNFSAPSSVDGGGGGGCGSDGERRSPDLPEYSGPPWADVDTLTSKDVKVFQLWGLSGSVAPAFDHLVSQRTNRSVNRCLELGSGAGDLSNAIPDNLAKGATVKLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPDVIQAVDMKSTGAMRIMATSHAVQEMARAGGADVDEIKMFLVWLENSLVVQI--TGGNEGKLQAMCQVLRHAVRQWRAQNVSVELSPMLVSKAAQRYGRNVVAGGVK--DIRYRFVETLSEAVGVDLWLDGLELRGQVVDPCGQASAQAKLETE 697
BLAST of mRNA_E_fasciculatus_S2_contig7196.15373.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC29_9PHAE) HSP 1 Score: 158 bits (399), Expect = 4.670e-38 Identity = 135/470 (28.72%), Postives = 201/470 (42.77%), Query Frame = 1
Query: 109 GSRPDVIVRLPCQGEIVDPLHKFLPFFRDHFGVTVTHDPSESAFCISRKAPESLSSRVAADCLEQGLRLCGDDDMKPADFLLLRARFP-SARDPDGSQYLLPLEAASGLPKKPRDLGDHHGVTIDYMPSRSVELGSGDGVSGGDD-------------GLPEYLCCPRVDTDDIHTA---VLQIWGLRHCVFSAYARVVALMTNR-IEYVVKLGP-----------------------VGAKAPGERSASYIPHG----------------GPEGQVRTWGSI-------HAGDGNLRKILEYISETLPDHVQWVDMKCTGAMRALSMPGAVVKIARASGIDNSHVRVTPLLQHQRMLVQVLKVGGDRAAIQRMRTFVEEYVEKWRGQRVIVPVTSDLILKAVAHVSSSGVTGLVSKGDSRGIFAAKLSEDVGERLWLDGFHLTARV-DPVRRDNVQAKLETELAQPYFD 1323
G P V + Q + L FL FFR FG + D +S + + + VA LE GLR+C ++ +KP DF LLRAR + D ++ + + D HG+ D +P ++ + + GG D GLPEY P D D + + V Q+WGL V A+ +V+ TNR + ++LG + A +A ++ G GP+ ++ G + D + E +SE +PD +Q VDMK TGAMR ++ AV ++ARA G D V++ + +R++VQ+ GG+ +Q M + V +WR Q V V ++ L KA + V G V D R F LSE VG LWLDG L +V DP + + QAKLETE+ + D
Sbjct: 412 GKPPLVAFGVHYQERDLPVLEGFLAFFRACFGEDIVRDSEKSMVSVVERGDYRTTESVAR-YLEHGLRVCREEGVKPCDFSLLRARSALTGETEDADLHVFCRTKGMATARSLCKISDCHGICADLVPPTVLKFSAPSSIDGGGDDGDCGSDGEQRSSGLPEYSGPPWADVDTLTSKDVKVFQLWGLSGSVAPAFDHLVSQRTNRPVNRCLELGSSAGDLSNAFPDNLARGATVLFSCLRAAVEAATNARHVLLGPTVSLRLNLVAAPLNFGPKVKLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPDIIQAVDMKSTGAMRIMATSHAVQEMARAGGADVDEVKMFLVWLEKRLVVQM--TGGNEGKLQAMCRVLRHAVRQWRAQNVSVELSPMLASKAAQRYGRNVVAGGVK--DIRYRFVETLSEAVGVDLWLDGMELRGQVVDPCGQASAQAKLETEMGKMSQD 876 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7196.15373.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7196.15373.1 >prot_E_fasciculatus_S2_contig7196.15373.1 ID=prot_E_fasciculatus_S2_contig7196.15373.1|Name=mRNA_E_fasciculatus_S2_contig7196.15373.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=448bp EPPLAAASTLHMSGVGDTLSERSGDGSHAGIGGDRAGSRPDVIVRLPCQGback to top mRNA from alignment at E_fasciculatus_S2_contig7196:483..4828+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7196.15373.1 ID=mRNA_E_fasciculatus_S2_contig7196.15373.1|Name=mRNA_E_fasciculatus_S2_contig7196.15373.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4346bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7196:483..4828+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7196:483..4828+ >mRNA_E_fasciculatus_S2_contig7196.15373.1 ID=mRNA_E_fasciculatus_S2_contig7196.15373.1|Name=mRNA_E_fasciculatus_S2_contig7196.15373.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1344bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7196:483..4828+ (Ectocarpus fasciculatus EfasUO2)back to top |