mRNA_E_fasciculatus_S2_contig7186.15363.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7186.15363.1
Unique NamemRNA_E_fasciculatus_S2_contig7186.15363.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7186.15363.1 vs.
Match: 3-ketoacyl-CoA (synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR7_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 6.570e-41
Identity = 85/95 (89.47%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:    1 MAEGTKPAADDAPAAAXXXXXXXSPTPAMRRNDISMTDMSDFDTGDNLYHVRKSRLIRLINWWQVASTYLPHLLLLALGVLVAQMCGEAWNNQDA 285
            MAEGTKPA D    A XXXXXXX    AMRRNDISMTDMSDFDTGDNLYHVRKSRLIRLINWWQVASTYLPHLLLLALGVLVAQMCGEAWNNQDA
Sbjct:    1 MAEGTKPADD----AXXXXXXXXXXXXAMRRNDISMTDMSDFDTGDNLYHVRKSRLIRLINWWQVASTYLPHLLLLALGVLVAQMCGEAWNNQDA 91
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BLAST of mRNA_E_fasciculatus_S2_contig7186.15363.1 vs.
Match: 3-ketoacyl-CoA (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.800e-20
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:   85 MRRNDISMTDMSDFDTGDNLYHVRKSRLIRLINWWQVASTYLPHLLLLALGVLVAQMCGEAWNNQDA 285
            MRRND+SMTD+S  D    +YHVRKSR+IRL+NWW V++TYLP+LLL A+GVLVAQ+  EA  N D+
Sbjct:    1 MRRNDVSMTDLSGVDNDPKVYHVRKSRMIRLVNWWTVSATYLPYLLLAAVGVLVAQVAQEAVANWDS 67
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BLAST of mRNA_E_fasciculatus_S2_contig7186.15363.1 vs.
Match: 3-ketoacyl-CoA (synthase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RV91_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.660e-6
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   85 MRRNDISMTDMS---DFDTGDNLYHVRKSRLIRLINWWQVASTYLPHLLLLALGVLVA----QMCGEAWNNQD 282
            MRR D S +DMS   D  T    YHVRKS ++R+INW  V ++Y+P L +L +GVL+A    Q+  E + N D
Sbjct:   11 MRRVD-SESDMSTAGDETTSYRNYHVRKSSMMRMINWVHVFTSYIPMLFVLGIGVLIALIMEQVASEFFQNND 82
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BLAST of mRNA_E_fasciculatus_S2_contig7186.15363.1 vs.
Match: 3-ketoacyl-CoA (synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBI7_HETAK)

HSP 1 Score: 53.9 bits (128), Expect = 2.670e-6
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:   79 PAMRRNDISMTDMSDFDTGD-NLYHVRKSRLIRLINWWQVASTYLPHLLLLALGVLVAQMCGEAWNNQD 282
            P +RRN +S +D+S+++T D   Y +RKS+LI LINW  V STY P+  L  +  +  Q     + N++
Sbjct:   42 PGLRRN-LSASDLSEYETTDPRKYQIRKSKLIGLINWTHVLSTYYPYFFLTVVAAVTVQFGISLYENRN 109
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7186.15363.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
3-ketoacyl-CoA6.570e-4189.47synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR... [more]
3-ketoacyl-CoA2.800e-2064.18synthase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
3-ketoacyl-CoA2.660e-645.21synthase n=1 Tax=Eucampia antarctica TaxID=49252 R... [more]
3-ketoacyl-CoA2.670e-639.13synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7186contigE_fasciculatus_S2_contig7186:3911..5755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score149.4
Seed ortholog evalue8.2e-34
Seed eggNOG ortholog2880.D8LTR7
Model size286
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K15397
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.synthase
EggNOG OGs2QPKZ@2759,COG3424@1
EC2.3.1.199
Cds size285
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842381.233764-CDS-E_fasciculatus_S2_contig7186:3910..41021696842381.233764-CDS-E_fasciculatus_S2_contig7186:3910..4102Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7186 3911..4102 +
1696842381.2474875-CDS-E_fasciculatus_S2_contig7186:5662..57551696842381.2474875-CDS-E_fasciculatus_S2_contig7186:5662..5755Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7186 5663..5755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7186.15363.1prot_E_fasciculatus_S2_contig7186.15363.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7186 3911..5755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7186.15363.1

>prot_E_fasciculatus_S2_contig7186.15363.1 ID=prot_E_fasciculatus_S2_contig7186.15363.1|Name=mRNA_E_fasciculatus_S2_contig7186.15363.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=95bp
MAEGTKPAADDAPAAAAPASSSSSPTPAMRRNDISMTDMSDFDTGDNLYH
VRKSRLIRLINWWQVASTYLPHLLLLALGVLVAQMCGEAWNNQDA
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mRNA from alignment at E_fasciculatus_S2_contig7186:3911..5755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7186.15363.1 ID=mRNA_E_fasciculatus_S2_contig7186.15363.1|Name=mRNA_E_fasciculatus_S2_contig7186.15363.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1845bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7186:3911..5755+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGGAGGGCACCAAGCCTGCTGCTGATGATGCTCCGGCAGCTGCAGC
ACCTGCATCATCGTCATCATCGCCGACACCGGCCATGCGCCGTAACGACA
TCTCCATGACGGACATGTCCGACTTCGATACGGGGGACAACCTCTACCAT
GTCCGCAAGTCGCGCCTGATTCGCCTCATCAACTGGTGGCAGGTGCGCAT
TGCGGGTGGTACTGCTGTGGGGTTATAGAGGTTAGAGAGTCTGCTGGTGA
GGATGGTGGAGCATGTTATGCATACGGCCATGAACAGCAGTACCGCAGTG
GAGCCTGTTGTTGTTCGCCAACCACAGAATATGCCCGGCCTTCGGACCCA
AGGGACGCTGCCTTTGCCGAGACACGGTTGATGACGTGTCGGAGTGATGG
GATGGATGAGAGCCTTTATATTTACAGCACCATGTCACGTTTCCCAGGCT
GCCCACCGTCTACTGGATCATGTTGGTGACATTTTTTTTTTTTTTTTTTT
TTTTTTTTTGTAATTTTAATTTCGGGGTTCATTTCGATTGGGGCCTTTTT
TTTTTTATTTTTGTTTTGGTTTTTGGGAAGGTGTTNNNNNNNNNNCCCCT
AACCTCACAGCCCCTTCCCCCGTTCCCCGGTCTGCCCCCCGTCTACTGGA
TCATGTTGGTGACTTTTTTTTTTTTTTTTCCCTTCTCGCTGCAAGTTGAA
TCTCGGGGTTCATTGCGAGCGAGCGCTTATTTTTTTTAGATATGTAGAGG
TTCAGCGGAAGGGGTTATTGTCGCCCAGTAGGTGTTCCGTGAGGGACGCC
CCTCCTGCAGACGCTACCGTTTTGTGTCGCAGGCATCCTTTATCCTTCCT
TTTCGGCCTCCATTTTCGTACAACATCACCCGAGGTGTACTTTAGACCAT
TTTATATTTTATGTCTACCCCTCCACATACTGCTGCTGTACCATGTGTAC
GGTACGAACGGTATGCGGGGAAACCTCTAGACCAATCAGTGCATCGTACC
TGCGGTACTGCTATGTAGCGTCTATCGCATCTGGCATCGGCCAGCCTCTA
TTGCAAAGTACATTCTGCTGCAGGCCGTCTGGTCTTATAATAAGGAGGGA
AATATTCCTGGAAATATTGAAATACTGCTGTATTTGTATTCGTTCACACC
CTTTTTTGTCCCAACCGAATTTTACAGGAATTTTACATGCGGGGTTGTAA
TCATACACACACCTATCCCCACCCGGTGCTACAGCTACGCTAGACATATT
TCAAACTCAGATTCCCGCTTTCCGCATGCCTGCTTGCAGTGAACGTGCAC
AAAAATGCGGGAATTCCCACGTTTTGAGTTTGAAATGGTAGGCGGGCTCT
TGGTTATTTCGATGAGCATACGGCGCTGCGTGCGTTGGGGTCAGCACGGG
TATTGACGAGGTCCAAAAGCATCCAAACGCAGAACCGACACCGGCAGAAG
CAGCAACGACGAGCAACAAAAGCAGCAGCAGCAGCAGACCAGCAGGAACC
ACACAAAAAACTGAAGAATGACATGCCGTCCGTCCCCACGAAGAACCTTG
TCCAATCTCACTCCCACGTCACCCCTTCACGCGGGTTGCTGACAGTTTCG
CGTAACCCCCTCCCTCCTTGTATTGTTTACAGCCTTCCGAACGCGTTCCG
GCCAAACAAGCAAGTACCGCCCTTATTTTGTGATTTTGGTTGTCCATTCC
CGGGTGTAATCGCCCTGTGTGTTTCTGTCATGTCGTCTGTCTACTCCCGC
AGGTGGCGTCCACGTACTTGCCCCACCTGCTGCTGCTCGCTCTGGGAGTG
CTGGTGGCCCAGATGTGCGGAGAGGCGTGGAACAATCAAGATGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7186:3911..5755+

>mRNA_E_fasciculatus_S2_contig7186.15363.1 ID=mRNA_E_fasciculatus_S2_contig7186.15363.1|Name=mRNA_E_fasciculatus_S2_contig7186.15363.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=285bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7186:3911..5755+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGGAGGGCACCAAGCCTGCTGCTGATGATGCTCCGGCAGCTGCAGC
ACCTGCATCATCGTCATCATCGCCGACACCGGCCATGCGCCGTAACGACA
TCTCCATGACGGACATGTCCGACTTCGATACGGGGGACAACCTCTACCAT
GTCCGCAAGTCGCGCCTGATTCGCCTCATCAACTGGTGGCAGGTGGCGTC
CACGTACTTGCCCCACCTGCTGCTGCTCGCTCTGGGAGTGCTGGTGGCCC
AGATGTGCGGAGAGGCGTGGAACAATCAAGATGCC
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