mRNA_E_fasciculatus_S2_contig7184.15360.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7184.15360.1
Unique NamemRNA_E_fasciculatus_S2_contig7184.15360.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7184.15360.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX81_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.880e-39
Identity = 106/128 (82.81%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:    1 MGNLCTSTKSANDGRRQPDSRRKGSGSTTGFSPTEDLGYVPEQDDGXXXXXXXXGALGGAAPAT--NGVGNGQ-VSASQVEVSTTSGAAGLLAGSGGSERQSRGRERTSNLSNGSGGEAPLNRSRRGT 375
            MGNLCTSTKSANDGRRQPDSRRKGSGSTTGFSPTEDLGYVPEQD  XXXXXXXX              VGNGQ VSASQVEVSTT GAAGL AGSGG ER SR RERTSNLSNGSGGEAPLNRSRRGT
Sbjct:    1 MGNLCTSTKSANDGRRQPDSRRKGSGSTTGFSPTEDLGYVPEQDXXXXXXXXXXXXXXXXXXXXXXGSVGNGQQVSASQVEVSTT-GAAGL-AGSGGGER-SRARERTSNLSNGSGGEAPLNRSRRGT 125
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BLAST of mRNA_E_fasciculatus_S2_contig7184.15360.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.310e-20
Identity = 74/95 (77.89%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 MGNLCTSTKSANDGRRQPDSRRKGSGSTTGFSPTEDLGYVPEQDDGXXXXXXXXGALGGAAPATNGVGNGQ-VSASQVEVSTTSGAAGLLAGSGG 282
            MGNLCTSTKSANDGRRQPDSRRKGSGSTTGFSPTEDLG+VPEQD  XXXXXXXX            VGN Q VSASQVEVSTT  A GL AGSGG
Sbjct:    1 MGNLCTSTKSANDGRRQPDSRRKGSGSTTGFSPTEDLGHVPEQDXXXXXXXXXXXXXXXXXXXXXSVGNDQQVSASQVEVSTTD-AVGL-AGSGG 93
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7184.15360.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.880e-3982.81protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.310e-2077.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7184contigE_fasciculatus_S2_contig7184:821..1501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size683
Hectar predicted targeting categoryother localisation
Exons1
Cds size681
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842381.0157204-CDS-E_fasciculatus_S2_contig7184:820..15011696842381.0157204-CDS-E_fasciculatus_S2_contig7184:820..1501Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7184 821..1501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7184.15360.1prot_E_fasciculatus_S2_contig7184.15360.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7184 821..1501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7184.15360.1

>prot_E_fasciculatus_S2_contig7184.15360.1 ID=prot_E_fasciculatus_S2_contig7184.15360.1|Name=mRNA_E_fasciculatus_S2_contig7184.15360.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=227bp
MGNLCTSTKSANDGRRQPDSRRKGSGSTTGFSPTEDLGYVPEQDDGGSAA
AAAAGALGGAAPATNGVGNGQVSASQVEVSTTSGAAGLLAGSGGSERQSR
GRERTSNLSNGSGGEAPLNRSRRGTSSSGATAAAAAAAAAAAAAEAADAR
NGVSPGVVGDGGRGAAAAAAAAAAAGDTGVDAGGGERGERESSRRRRDSA
GRSGKDGDDRRRSSRRSRSSRKDGLES
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mRNA from alignment at E_fasciculatus_S2_contig7184:821..1501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7184.15360.1 ID=mRNA_E_fasciculatus_S2_contig7184.15360.1|Name=mRNA_E_fasciculatus_S2_contig7184.15360.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=681bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7184:821..1501+ (Ectocarpus fasciculatus EfasUO2)
ATGGGTAACCTGTGCACCTCGACGAAGAGTGCAAACGACGGGCGACGACA
ACCAGACTCGCGAAGAAAAGGGTCCGGCTCCACGACGGGCTTCTCCCCCA
CGGAGGATCTTGGGTACGTTCCCGAGCAAGATGACGGGGGCAGCGCGGCG
GCGGCGGCGGCGGGGGCGCTGGGGGGGGCGGCACCAGCAACAAACGGGGT
CGGAAACGGCCAGGTGTCTGCGTCACAGGTAGAGGTGAGCACGACGAGCG
GCGCGGCGGGGCTCCTCGCGGGTTCAGGGGGAAGCGAGCGGCAGAGTCGA
GGGCGAGAGCGGACCTCGAACCTCAGCAACGGTTCCGGCGGCGAAGCCCC
CCTCAATCGCAGCAGGCGCGGGACGTCTTCATCAGGAGCAACAGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCAGAAGCAGCAGACGCGAGG
AACGGCGTCTCTCCCGGCGTCGTCGGTGACGGGGGGCGGGGGGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGGCGACACCGGCGTCGACGCCGGCG
GGGGCGAAAGAGGCGAGCGGGAGTCATCGCGGCGGCGCCGCGACTCCGCC
GGCAGGAGCGGCAAGGACGGCGACGACCGCCGCCGCTCCTCCCGGCGGTC
CAGGTCCTCCCGAAAGGACGGCCTCGAGAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7184:821..1501+

>mRNA_E_fasciculatus_S2_contig7184.15360.1 ID=mRNA_E_fasciculatus_S2_contig7184.15360.1|Name=mRNA_E_fasciculatus_S2_contig7184.15360.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=681bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7184:821..1501+ (Ectocarpus fasciculatus EfasUO2)
ATGGGTAACCTGTGCACCTCGACGAAGAGTGCAAACGACGGGCGACGACA
ACCAGACTCGCGAAGAAAAGGGTCCGGCTCCACGACGGGCTTCTCCCCCA
CGGAGGATCTTGGGTACGTTCCCGAGCAAGATGACGGGGGCAGCGCGGCG
GCGGCGGCGGCGGGGGCGCTGGGGGGGGCGGCACCAGCAACAAACGGGGT
CGGAAACGGCCAGGTGTCTGCGTCACAGGTAGAGGTGAGCACGACGAGCG
GCGCGGCGGGGCTCCTCGCGGGTTCAGGGGGAAGCGAGCGGCAGAGTCGA
GGGCGAGAGCGGACCTCGAACCTCAGCAACGGTTCCGGCGGCGAAGCCCC
CCTCAATCGCAGCAGGCGCGGGACGTCTTCATCAGGAGCAACAGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCAGAAGCAGCAGACGCGAGG
AACGGCGTCTCTCCCGGCGTCGTCGGTGACGGGGGGCGGGGGGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGGCGACACCGGCGTCGACGCCGGCG
GGGGCGAAAGAGGCGAGCGGGAGTCATCGCGGCGGCGCCGCGACTCCGCC
GGCAGGAGCGGCAAGGACGGCGACGACCGCCGCCGCTCCTCCCGGCGGTC
CAGGTCCTCCCGAAAGGACGGCCTCGAGAGC
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