mRNA_E_fasciculatus_S2_contig7173.15351.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7173.15351.1 vs.
Match: OTU (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ3_9PHAE) HSP 1 Score: 735 bits (1897), Expect = 9.870e-243 Identity = 710/1103 (64.37%), Postives = 729/1103 (66.09%), Query Frame = 1
Query: 1 GKQYPMAVLRGAYMTPEAADVRAAMAQAAVRAFDRLAKEQEEEINRALLASEGENGNPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------TKVGEGLSSWSGSSTADLSDGPTAGLFVDDGSGGRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRARLARPESNTRAEGDXXXXXXXXXXXXXXXXXPVEPPPIGSRFLSAPLDMLSAVGAWATGRGRYSVGSTTSDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGDPPALPRSGNGVGKCTAGSGSAGDGARPGTYAAVNPLDLRLDDFSGHGGGGDSGASASGRPPSVHGPGEEGGMDPNSPPANDSREAEVAATTNGKRKPVCSPAVTPEGPNPGQHFGGARSTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAPSGAAASVRAFAAVTEAYHATERWRSARSGGAGSRRGQPHPRGSSPGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGARADGGGEIRPETAPSKARYHSRTRRPRGEDP-GAPVDRYLSTERGSRAVQDGIDTMSLTSSVASGERRYYSSGRLPHGAAVAAGANHDFDLGGGHGGRSXXXXXXXXXXXXXXXXXXXXXXXXXTAGRRG----SSNAPPPRELSGYSLYPRSPASTTPARAQRAGGDEGEAWSSRGMPSSSSLSRDGGRCSLAQSSSSSG--------VGKDVGDGFAGGGDEGRERRNQGESAGYYNYGGSSYSYGARAGSSVASLPRQLSGSGRYPSPAAARPSSASRKSDYLRAAALTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSFLASGQLGTAAT--GFPSNVPGAVTQQQQQALSARG--RLAGAGSXXXXXXVRSNGSVRSSRSYSGSYSGSNAGGYDGQTLSEIRRSLAARERREVEATSVGAPRSRKTYAETPKFY 3240
GKQYPMAVLRGAYMTPEAADVRAAMAQ AV AFDRLAKEQEEEI RALLASEGEN XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX TK G+GL SWS SST DLSDGPTAGLFVDDG+G RD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RARL RPES+ RAEG+ PV PPIGSR LSAPLDMLSAVGAWATGRGRYSVGS SDT XXXXXXXXXXXXXXXXX TAAG PPA PRSGNGVG T GSG AGDGARPG A +PLDLRLDDFSGHG G D GASASG P SVH PGEE GM NSPP N + EAEVAATTNGKRKP CSPA+TPEG NPGQHFG ARSTA A XXXXXXXXXXXXXXXXXXXXXXX PG +G AASVRAFAA TEAYHATERWRSARSGGAGSRRGQPHPRGSSPGGD XXXXXXXXXXXXXXX GARA GG E RPETAP KARYHSRTRRPRGEDP GAP DRY TERGSR+VQDGIDTMSL S+ASGERRY+SSGRLPH AAVAAGANHDFDLGGGHGG S XXXXXXXX SSN PPRELS Y LYPRS ASTT ARA+ A SSRGM SSS LSRDGG CS A+SS V +DVGDGFAG GDEG E RN+GESAGYY+YGGSS S ASL RQLSGS R PSPA ARPSSA RKSDYLRAA LTR ASS+LAS QLGTAA+ GFPSNVPGAV QQQ LSARG XXXXXX RSYSGS SGSNAG YDGQTLSEIRRSLAARERREVEATSVGAPRSR Y +TPKFY
Sbjct: 254 GKQYPMAVLRGAYMTPEAADVRAAMAQTAVTAFDRLAKEQEEEIKRALLASEGENXXXXXXXXXXXXXXXXXXXXXXXXXQGPTQSPPXXXXXXXXXXXXXXXXXXXXXXATATKHGDGLCSWSASSTTDLSDGPTAGLFVDDGNGERDKGAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAVGVPAGEAGRPSGEEDTDG-----RRARLERPESSPRAEGNGGGVDGGIGGGGSEDSPPVASPPIGSRLLSAPLDMLSAVGAWATGRGRYSVGSAASDTAXXXXXXXXXXXXXXXXXLSDGGRTASSSDSISS-TAAGGPPASPRSGNGVGSRTGGSGGAGDGARPGKLAGASPLDLRLDDFSGHGAGDDGGASASGMPRSVHVPGEEEGMGLNSPPPNGNGEAEVAATTNGKRKPACSPAITPEGANPGQHFGDARSTAAASATAGVEEDWRVANTAAAPGSRRRSKGRNSTGTAGXXXXXXXXXXXXXXXXXXXXXXXQEEGEEK---PGESTGVAASVRAFAAATEAYHATERWRSARSGGAGSRRGQPHPRGSSPGGDGEAATGGRSSIPWLATSSLAIAAAERRPQGESRADEVGRRLAXXXXXXXXXXXXXXXXXGARAGGGVETRPETAPPKARYHSRTRRPRGEDPSGAPFDRYPLTERGSRSVQDGIDTMSLARSIASGERRYHSSGRLPHVAAVAAGANHDFDLGGGHGGSSSWDAYHLPVEAATSPTRXXXXXXXXXXXXXXXXXESSNPSPPRELSDYRLYPRSTASTTEARARXXXXXXXXARSSRGMSSSSPLSRDGGLCSFARSSXXXXXXXXXXXXVRRDVGDGFAGAGDEGGEWRNRGESAGYYSYGGSSXXXXXXXXXSTASLSRQLSGSERSPSPAFARPSSAYRKSDYLRAAGLTRPGSSSSSLSRAALTGRRSPLRTSISSSSSSVS-ASSYLASRQLGTAASAAGFPSNVPGAVLTQQQ-GLSARGGXXXXXXXXXXXXXXXXXXXXXXXGRSYSGSCSGSNAG-YDGQTLSEIRRSLAARERREVEATSVGAPRSRTAYVDTPKFY 1344
BLAST of mRNA_E_fasciculatus_S2_contig7173.15351.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP5_ECTSI) HSP 1 Score: 613 bits (1582), Expect = 3.810e-199 Identity = 712/1086 (65.56%), Postives = 728/1086 (67.03%), Query Frame = 1
Query: 40 MTPEAADVRAAMAQAAVRAFDRLAKEQEEEINRALLASEGENGNPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TKVGEGLSSWSGSSTADLSDGPTAGLFVDDGSGGRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRARLARPESNTRAEGDXXXXXXXXXXXXXXXXXPVEPPPIGSRFLSAPLDMLSAVGAWATGRGRYSVGSTTSDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGDPPALPRSGNGVGKCTAGSGSAGDGARPGTYAAVNPLDLRLDDFSGHGGGGDSGASASGRPPSVHGPGEE-GGMDPNSPPANDSREAEVAATTNGKRKPVCSPAVTPEGPNPGQHFGGARSTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGA-PSGAAASVRAFAAVTEAYHATERWRSARSGGAGSRRGQPHPRGSSPGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGARADGGGEIRPETAPSKARYHSRTRRPRGEDP-GAPVDRYLSTERGSRAVQDGIDTMSLTSSVASGERRYYSSGRLPHGAAVAAGANHDFDLGGGHGGRSXXXXXXXXXXXXXXXXXXXXXXXXXTAGRRGSSNAPPP----RELSGYSLYPRSPASTTPARAQRAGGDEGEAWSSRGMPSSSSLSRDGGRCSLAQSSSSSGVGKDVGDGFAGGGDEGRERRNQGESAGYYNYGGSSYSYGARAGSSVASLPRQLSGSGRYPSP-----AAARPSSASRKSDYLRAAALTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSFLASGQLGTAATGF--PSNVPGAVTQQQQQALSARGRL---AGAGSXXXXXXVRSNGSVRSSRSYSGSYSGSNAGGYDGQTLSEIRRSLAARERREVEATSVGAPRSRKTYAETPKFY 3240
MTPEAADVRAAMAQ AV AFDRLAKEQEEEI RAL ASEGE XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX TK G+GLSSWSGSSTADLSDGPTAGLFVDDG+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RARLARPES+ RAEG+ X PV PPIGSR LSAPLDMLSAVGAWATGRGRYSVGS SDT XXXXXXXXXXXXXXX TAAGDPPALPRSG+GVG T GSGSAGDGARPGTYA +PLDLRLD FSGHGGGGDSGASASGRPPSVH PGEE GM NSPP N + EAEVAATTNGKRKPVCSPAVTPEGPNPGQHFG ARSTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PG P G AASVRAFAA TEAYHATERWRSARSGGAGSRRGQPHPRGSSPGGD XXXXXXXXXXXXXXXXXATGARA G GE RPETAP KARYHSRTRRPRGEDP GAPVDRY TERGSR+VQDGIDTMSL SS+ASGERRYYSSGRLPH AAVAAGANHDFDLGG XXXXXXXXXXXXXXXXXXXXXXXXX RELS YSLYPRSPASTT ARA+RAG A ARPSSASRKSD+LRAAALTR ASS+LASG+LGTAA+ PSNVPGAV QQQQ LSARG L AG+G XXXXX VRSNGSVRS RSYSGS SGSNAG Y GQTLSEIRRSLAARERREVEATSVGAPRSRK YA+TPKFY
Sbjct: 1 MTPEAADVRAAMAQTAVTAFDRLAKEQEEEIKRALRASEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGPPVLSPPSEAKLPXXXXXXXXXATKNGDGLSSWSGSSTADLSDGPTAGLFVDDGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGVGVPAGEAGRSGGEDDTDGL---RARLARPESSARAEGNGGGVDGGIXGGVGEDSPPVASPPIGSRLLSAPLDMLSAVGAWATGRGRYSVGSAASDTAAXXXXXXXXXXXXXXXSLSDGGRTASSSESSISSTAAGDPPALPRSGDGVGSRTGGSGSAGDGARPGTYAGASPLDLRLDGFSGHGGGGDSGASASGRPPSVHVPGEEEDGMVLNSPPPNGNGEAEVAATTNGKRKPVCSPAVTPEGPNPGQHFGDARSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQEEGEEM--PGEEPPGVAASVRAFAAATEAYHATERWRSARSGGAGSRRGQPHPRGSSPGGDGEAATGGRSSNPWLATSSLAIAAAERRPQGESRADEDGRRXXXXXXXXXXXXXXXXXATGARAGGEGETRPETAPPKARYHSRTRRPRGEDPSGAPVDRYPLTERGSRSVQDGIDTMSLASSIASGERRYYSSGRLPHVAAVAAGANHDFDLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELSDYSLYPRSPASTTAARARRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVARPSSASRKSDHLRAAALTRPGSSSSSLSRAALTGRRSPLRTSISSSSSSVS-ASSYLASGKLGTAASAARCPSNVPGAVLTQQQQGLSARGVLLSRAGSGXXXXXXSVRSNGSVRSGRSYSGSCSGSNAG-YGGQTLSEIRRSLAARERREVEATSVGAPRSRKAYADTPKFY 1079 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7173.15351.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7173.15351.1 >prot_E_fasciculatus_S2_contig7173.15351.1 ID=prot_E_fasciculatus_S2_contig7173.15351.1|Name=mRNA_E_fasciculatus_S2_contig7173.15351.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1076bp MAVLRGAYMTPEAADVRAAMAQAAVRAFDRLAKEQEEEINRALLASEGENback to top mRNA from alignment at E_fasciculatus_S2_contig7173:3465..7595- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7173.15351.1 ID=mRNA_E_fasciculatus_S2_contig7173.15351.1|Name=mRNA_E_fasciculatus_S2_contig7173.15351.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4131bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7173:3465..7595- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7173:3465..7595- >mRNA_E_fasciculatus_S2_contig7173.15351.1 ID=mRNA_E_fasciculatus_S2_contig7173.15351.1|Name=mRNA_E_fasciculatus_S2_contig7173.15351.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3228bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7173:3465..7595- (Ectocarpus fasciculatus EfasUO2)back to top |