mRNA_E_fasciculatus_S2_contig7158.15334.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7158.15334.1
Unique NamemRNA_E_fasciculatus_S2_contig7158.15334.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7158.15334.1 vs.
Match: UBC (core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W3_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 3.340e-84
Identity = 152/170 (89.41%), Postives = 155/170 (91.18%), Query Frame = 3 
Query:    3 QVVNGASVSSSRGVPAPDCVEISMSCPWVSHCAGGGVVTYRLPRSTKLCGVLADFCHLADISLRRATVKRARLFLASDFRDGCCDGEELDDNRTLEYLKVTSGSVLLVCVAPTVKDLAPTGSLCGASSPGNEYPRRXXXXXXXXXXXXXSAPGFDGAEFDEEEEVHTEDE 512
            QVV GASVSSSRGVPAPDCVEI MSCPWVSHCAGGGVVTYRLPRSTKLCGVLADFCHLADISLRRATVKRARLFLASDFRDGCCDGEELDD+RTLEYL VTSGSVLLVCVAPTVKDLAP GSLC + S G+EYPRR   XXXXXXXXX SA GFDG EFD EEEV TEDE
Sbjct:  980 QVVKGASVSSSRGVPAPDCVEIFMSCPWVSHCAGGGVVTYRLPRSTKLCGVLADFCHLADISLRRATVKRARLFLASDFRDGCCDGEELDDHRTLEYLNVTSGSVLLVCVAPTVKDLAPAGSLCVSPSAGDEYPRRRPGXXXXXXXXX-SASGFDGREFDHEEEVDTEDE 1148
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7158.15334.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UBC3.340e-8489.41core domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7158contigE_fasciculatus_S2_contig7158:813..2945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size651
Hectar predicted targeting categoryother localisation
Exons4
Cds size453
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7158.15334.1prot_E_fasciculatus_S2_contig7158.15334.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7158 940..2300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842378.0983987-UTR-E_fasciculatus_S2_contig7158:812..9391696842378.0983987-UTR-E_fasciculatus_S2_contig7158:812..939Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7158 813..939 -
1696842378.1415179-UTR-E_fasciculatus_S2_contig7158:2300..23431696842378.1415179-UTR-E_fasciculatus_S2_contig7158:2300..2343Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7158 2301..2343 -
1696842378.150826-UTR-E_fasciculatus_S2_contig7158:2917..29451696842378.150826-UTR-E_fasciculatus_S2_contig7158:2917..2945Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7158 2918..2945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842378.1109695-CDS-E_fasciculatus_S2_contig7158:939..11161696842378.1109695-CDS-E_fasciculatus_S2_contig7158:939..1116Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7158 940..1116 -
1696842378.1208165-CDS-E_fasciculatus_S2_contig7158:1452..16191696842378.1208165-CDS-E_fasciculatus_S2_contig7158:1452..1619Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7158 1453..1619 -
1696842378.1310496-CDS-E_fasciculatus_S2_contig7158:2191..23001696842378.1310496-CDS-E_fasciculatus_S2_contig7158:2191..2300Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7158 2192..2300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7158.15334.1

>prot_E_fasciculatus_S2_contig7158.15334.1 ID=prot_E_fasciculatus_S2_contig7158.15334.1|Name=mRNA_E_fasciculatus_S2_contig7158.15334.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=151bp
MSCPWVSHCAGGGVVTYRLPRSTKLCGVLADFCHLADISLRRATVKRARL
FLASDFRDGCCDGEELDDNRTLEYLKVTSGSVLLVCVAPTVKDLAPTGSL
CGASSPGNEYPRRRPPGGGARGGGGGSAPGFDGAEFDEEEEVHTEDEVEE
*
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mRNA from alignment at E_fasciculatus_S2_contig7158:813..2945-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7158.15334.1 ID=mRNA_E_fasciculatus_S2_contig7158.15334.1|Name=mRNA_E_fasciculatus_S2_contig7158.15334.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2133bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7158:813..2945- (Ectocarpus fasciculatus EfasUO2)
AGCAGGTGGTGAACGGCGCTTCCGTCAGGTGCGTCCGGTGCCGGTGGTGG
CGTGCTCTCCGGTCTTGGGACGGGGCCGGCGGCGCGCTGTCTCAGTCGCT
CGCCTTCTTGCCTTTGTGGCTGGATGTGCAGCTGCTGTGTGTGTACTCGA
TTTTAGCATCAACGGCGCCAACCGGCTGGCCAATGTGTGTGTGTGTCGAT
CTTGCTGGTGTGTCTGGCATTGGCGGTAGTTGGACCTTGTCCTAAGTCGG
CCGTCGAACACCTTGGAACGATGGGACGGGGCGCGTTGGCGTCCTGCCGA
CCAGGCAGGGGAGAGGCGGGTCGTGCTAGGATTTGGTGGGCATGTTATTA
TCAAGTTATTATCTTATTATCATTATCATTATCAGATTGTCCATTTCGTG
GAAATCGAAGCGCATCCCGACTCCCCTCCAACAATAGCGCACAGGCACGG
TTATTTCTTCATGTTTGCACATCCTCCCCTTTGTTGTCCCCCCCCCCCCC
CTCCTCATTTGATTTTCGTTGACATTGCCCCGCCGGCCTGTTGCCTTTTA
TCTCACCGTTTTTTTCTTCATTTATTGACTTTCTGGCGTCTCTCGACGAC
AGCTCTTCGAGGGGCGTTCCCGCGCCCGACTGCGTCGAGATCTCCATGTC
TTGCCCCTGGGTGTCCCACTGCGCCGGCGGCGGTGTGGTCACCTACCGCC
TTCCAAGGTCGACCAAGCTCTGCGGCGTGCTGGCCGACTTCTGCCATTTG
GCAGGTTCGTCCTTGTTGGGGGTGCGGAGTAGAGGGAGGGGTACCCATAG
CCGTAGTCGTGTGCTGGCTGGTGTGTTTTCGGCGAATGTTGAAGGCGTTG
GTGGGGGGGGGGGGTCTGTGGCCGGATGGTCTCATCAGGAGCTTGGATTA
TGCTTCTTTTTAAAGAAAAAGTACAAGTACAAACACCGAAAGACTACCCG
TTCGAGAAAAAAGCCACAGTCGAAGGGGATGTGTTGAAGTCTTGACAATG
AATGGTAAATTTTTTTGTTGGAGTGAGGTGGGGAGCATGTAAGCAAGACA
GTGGCCGGTCTGTGACCAGCAAGGTTGCGAGATATTCACTGTAGGTCTCG
ATTGTTGGACGAGCCGTTCCGACGGACGGCCGTTGCTAGGAAAGAGAACA
AGCTTGTCGCAATGGTTGTGAGAGGGGATGTCCGATAAAATCTCGAGGAC
AATGTGGTGTGAAACGTATTGTCTCACATGCATACGTACCGAGTTATGCT
AAACTGACAACAGGGCCAATCAGCTTACGTGAAACCAACACTGCCCACCC
CGCCCCCCCTGTGCTTCGTCCTCCAGACATAAGCCTACGGCGCGCGACCG
TGAAGCGAGCGAGGTTGTTCTTGGCGTCGGACTTCAGGGACGGCTGCTGC
GACGGAGAGGAGCTCGACGACAATCGAACGCTCGAGTACCTCAAGGTCAC
ATCGGGCTCCGTCCTTCTCGTCTGCGTGGCCCCGACGGTCAAGGTGCGTG
TTTATTACGCGCGCGTTGTTGTTTCACCGTGGGGTTGGTGTTTGTTGGTT
GGGGGTCTGTTTGTTGTTCGATGGAAAGAGTGGGAGAGGCAGAAAGGGTT
GTGTTTGTATACACCGCGGGGTGTTGCGTCTTGGTGTGTGTTTGCAAGCG
GCAGACAGGAGAACGCGTCGCTTTTTGTGCTCTCGTTTACTACCCGAGTT
GATGTTTTCCGGCTTGCAATCACCTGCTGCCGTGCATTTCGACGTGTACA
TGACGGTCTTGAGTCAATCCGACCGACGTTCTCCCCACTCCACCACAACT
CCGCCCTGTTTTTCTATTTTGTCTAACAGGACCTCGCGCCCACGGGCTCA
CTGTGCGGGGCCTCTTCCCCCGGGAACGAGTACCCCAGGAGACGGCCGCC
CGGAGGGGGGGCGCGTGGAGGCGGCGGCGGTAGTGCTCCTGGTTTCGACG
GGGCAGAATTCGACGAGGAGGAGGAGGTACACACAGAGGATGAGGTCGAA
GAATAACTTGCTCTGTGAGGAGGAGGGACGCCGCCGGGGCCAGTTGGGTC
TCGCGACGCGTCTAAGAAGGAAAGGGGCGACCGCACCGACAGAGGACGTT
GCTGCTGGGGCCGACCAGGGAACCGCCGGTGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7158:813..2945-

>mRNA_E_fasciculatus_S2_contig7158.15334.1 ID=mRNA_E_fasciculatus_S2_contig7158.15334.1|Name=mRNA_E_fasciculatus_S2_contig7158.15334.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=453bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7158:813..2945- (Ectocarpus fasciculatus EfasUO2)
ATGTCTTGCCCCTGGGTGTCCCACTGCGCCGGCGGCGGTGTGGTCACCTA
CCGCCTTCCAAGGTCGACCAAGCTCTGCGGCGTGCTGGCCGACTTCTGCC
ATTTGGCAGACATAAGCCTACGGCGCGCGACCGTGAAGCGAGCGAGGTTG
TTCTTGGCGTCGGACTTCAGGGACGGCTGCTGCGACGGAGAGGAGCTCGA
CGACAATCGAACGCTCGAGTACCTCAAGGTCACATCGGGCTCCGTCCTTC
TCGTCTGCGTGGCCCCGACGGTCAAGGACCTCGCGCCCACGGGCTCACTG
TGCGGGGCCTCTTCCCCCGGGAACGAGTACCCCAGGAGACGGCCGCCCGG
AGGGGGGGCGCGTGGAGGCGGCGGCGGTAGTGCTCCTGGTTTCGACGGGG
CAGAATTCGACGAGGAGGAGGAGGTACACACAGAGGATGAGGTCGAAGAA
TAA
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