mRNA_E_fasciculatus_S2_contig714.15316.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig714.15316.1
Unique NamemRNA_E_fasciculatus_S2_contig714.15316.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig714.15316.1 vs.
Match: Sm (protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.160e-59
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 1 
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG-FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANVKADGADGRANGMDEEEDEG 303
            MATPVNPKPFLNELTGKPVMVKLKWGMEYKG FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRG EEDEAN KADGA+G ANGMDEEEDEG
Sbjct:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKADGAEG-ANGMDEEEDEG 101
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig714.15316.1 vs.
Match: Sm (protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 143 bits (360), Expect = 1.300e-42
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANVKAD 255
            MAT PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLYLRG  EDE  V+ D
Sbjct:    1 MATVPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDEDAVEED 86
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BLAST of mRNA_E_fasciculatus_S2_contig714.15316.1 vs.
Match: Sm (protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 142 bits (359), Expect = 2.350e-42
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    4 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANVKAD 255
            + PVNPKPFLN LTGKPVMVKLKWGMEYKGFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE   +AD
Sbjct:   10 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 93
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig714.15316.1 vs.
Match: Sm (protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 141 bits (355), Expect = 7.520e-42
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANVKAD 255
            M+ PVNPKPFLN LTGKPV+VKLKWGMEYKGFL SVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE   +AD
Sbjct:    1 MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 85
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig714.15316.1 vs.
Match: Sm (protein F n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M2E4_9MAGN)

HSP 1 Score: 141 bits (355), Expect = 7.980e-42
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    4 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANVKAD 255
            + PVNPKPFLN LTGKPVMVKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE   +AD
Sbjct:    4 SVPVNPKPFLNTLTGKPVMVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGKFTGNLGEILIRCNNVLYLRGVPEDEDITEAD 87
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig714.15316.1 vs.
Match: Sm (protein F n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJP6_9CHLO)

HSP 1 Score: 141 bits (355), Expect = 1.080e-41
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    4 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEED 234
            + PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVS D YMNL L STEEY+DG+FAGNLG+VLIRCNNVLYLRGAEE+
Sbjct:    4 SVPVNPKPFLNQLTGKPVIVKLKWGMEYKGYLVSTDAYMNLQLASTEEYIDGQFAGNLGEVLIRCNNVLYLRGAEEE 80
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig714.15316.1 vs.
Match: Sm (protein F n=2 Tax=Micromonas TaxID=38832 RepID=C1EHA5_MICCC)

HSP 1 Score: 140 bits (353), Expect = 1.470e-41
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:   10 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEED 234
            PVNPKPFLN+LTGKP++VKLKWGMEYKGFLVS D YMNL L STEEYVDG+FAGNLG+VLIRCNNVLYLRGAE++
Sbjct:    6 PVNPKPFLNQLTGKPIIVKLKWGMEYKGFLVSTDAYMNLQLASTEEYVDGKFAGNLGEVLIRCNNVLYLRGAEDE 80
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig714.15316.1 vs.
Match: Sm (protein F n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGH6_SPIIN)

HSP 1 Score: 140 bits (353), Expect = 1.560e-41
Identity = 66/82 (80.49%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:   10 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANVKAD 255
            PVNPKPFLN LTGKPV+VKLKWGMEYKGFLVSVD+YMNL L +TEEYVDGEF GNLG++LIRCNNVLYLRG  ED+    AD
Sbjct:    7 PVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYVDGEFTGNLGEILIRCNNVLYLRGVPEDDEIEDAD 88
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig714.15316.1 vs.
Match: Sm (protein F n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A804J679_MUSAM)

HSP 1 Score: 140 bits (352), Expect = 2.090e-41
Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANVKAD 255
            MAT PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEYVDG+F GNLG++LIRCNNVLYLRG  EDE    AD
Sbjct:    1 MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYVDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 86
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig714.15316.1 vs.
Match: Sm (protein F n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EWT9_ASPOF)

HSP 1 Score: 140 bits (352), Expect = 2.660e-41
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    4 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEEDEANVKAD 255
            A PVNPKPFLN LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG  EDE    AD
Sbjct:   11 AIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 94
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig714.15316.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Sm1.160e-5995.10protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW... [more]
Sm1.300e-4280.23protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=... [more]
Sm2.350e-4278.57protein F n=1 Tax=Thalictrum thalictroides TaxID=4... [more]
Sm7.520e-4276.47protein F n=4 Tax=Mesangiospermae TaxID=1437183 Re... [more]
Sm7.980e-4277.38protein F n=1 Tax=Coptis chinensis TaxID=261450 Re... [more]
Sm1.080e-4183.12protein F n=1 Tax=Mantoniella antarctica TaxID=818... [more]
Sm1.470e-4185.33protein F n=2 Tax=Micromonas TaxID=38832 RepID=C1E... [more]
Sm1.560e-4180.49protein F n=1 Tax=Spirodela intermedia TaxID=51605... [more]
Sm2.090e-4179.07protein F n=10 Tax=Mesangiospermae TaxID=1437183 R... [more]
Sm2.660e-4177.38protein F n=1 Tax=Asparagus officinalis TaxID=4686... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig714contigE_fasciculatus_S2_contig714:3718..6135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score189.5
Seed ortholog evalue7.7e-46
Seed eggNOG ortholog2880.D7FWG1
Preferred nameSNRPF
Model size306
KEGG koko:K11098
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904,GO:1990935
Exons2
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsKOG3482@1,KOG3482@2759
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein SmF
Ec32 orthologEc-07_007380.1
Cds size306
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842376.122814-CDS-E_fasciculatus_S2_contig714:3717..38081696842376.122814-CDS-E_fasciculatus_S2_contig714:3717..3808Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig714 3718..3808 +
1696842376.1370032-CDS-E_fasciculatus_S2_contig714:5920..61351696842376.1370032-CDS-E_fasciculatus_S2_contig714:5920..6135Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig714 5921..6135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig714.15316.1prot_E_fasciculatus_S2_contig714.15316.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig714 3718..6135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig714.15316.1

>prot_E_fasciculatus_S2_contig714.15316.1 ID=prot_E_fasciculatus_S2_contig714.15316.1|Name=mRNA_E_fasciculatus_S2_contig714.15316.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=102bp
MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEY
VDGEFAGNLGDVLIRCNNVLYLRGAEEDEANVKADGADGRANGMDEEEDE
G*
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mRNA from alignment at E_fasciculatus_S2_contig714:3718..6135+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig714.15316.1 ID=mRNA_E_fasciculatus_S2_contig714.15316.1|Name=mRNA_E_fasciculatus_S2_contig714.15316.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2418bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig714:3718..6135+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGACACCTGTGAACCCGAAGCCCTTCTTGAATGAGCTCACAGGGAA
GCCGGTGATGGTGAAGCTGAAGTGGGGCATGGAATACAAGGGTGAGTGCA
AATTTCTTTTTTTTGAAAATATCCATGGCCGCCCTCCCTAGTCTAGCCTA
CATTGCACCAGTGCCACCGCAGCGGCATCAGGCGAAACAACAAACAACAA
CGCCAACACAACAGGTACAATATTGCCATCCACTGATCTACAGCAGTGAC
ACAGCAGTGCACTCTCCCCTTGGAACGGTTGCGAGGAGTTCGGAACGCGC
GCAGTCGACAAAGCAAGTGCCCGCTCACTGGCGTCGTGTCAAATGTCGGC
CTGCAGGCCGCGTTGCTTGACGAAAACCCTGCCCTGTGGTACAGACTACT
CCTGGTCCTGCTATAGCGCGCTCCTCTCGTGTTCAGTTCGGATCTACGTG
GGTGCTTCCTCTGTCTGGAGAGCGTTGGGCTGACCTTGGGCAGTTGTTGC
AAACAGGCGTTCATTCGACTCGCATTATTGCTGCTGTAGACGAACTCCAA
GAAAAAACTGTCTGGTACTATCTACATCTAACTGCTGTTGTTCGTGCAAA
ATCGTATCCTGGTACATGCTGCCTGCCGCTTGCAGAGAGATAAAGTCCAC
GGAGATGGCGGCGTGTGTGCATAGAAGCATGACCCGATGCTGGTAGTTCC
TTCTTCGCCATTAAGTCAACAACACCAACTGGCCGTATAATTTTGTACCG
ATATGCTACAATCTGAAAAGATTTCTGAAGGATTTGAAAAAAAAAAAAAA
TACTAGCCGGAGCAGCGCTTCATGTTATCTGTATTTTTTTCGCAGCTGTG
AGTGAACCCTTTCTGCAATACAACGCACACCTAAGGAGGGTCACGAATGT
GTCTCCTTCTTTTTTGCTGATGAGCTATACCCCGCATCGCCCTCGTTGAT
CTCCATATTGCCAGTGCAAAGAAAAGCTGCTGCGTTGGATATCCTCCCCT
ATCCCGCGCTGTAGTGATAGTAGTACTGTTGTCCGCTCACGTGCGCCGAC
ATCGCGGGCCGAAGAAATGAGAAAACAGTCGAGCGACCACAATTGCTTCC
AAGCACTGTCCGTGCTGCTGCGCTGCCGGATGTGCCCCTCTACCAACATG
GGTTGCTGTTCACCAGGCATCCACAAGCTCTGCTGTGGTCATTCGGAGGG
GTGTGTGGTGTGTGGCTCACCGTGAATATGCCGCAACAAATGTACCAACA
AGTGCTGTTGGCTCACTGCTGGCAGCACCACATTCACGATGACTGCAATT
TAGTGTGTGTATTCTGCTTACTACCTCTAAAGGCGCCGGAATGCCTACAG
GGTAGTAAGCCTCAGAAAATCTTGCGGTGGCGGTATTGATCGGATATTTT
GTCTAGAGGACACTGCACCTTGTGCGGTTTTCGGCCTCTCGACGCGGCCG
GTCGTTCCCGCGGTCGCGATGCAGAAACATATTCTGGGTGGTTTTTGGTC
GAATCTATCCCTCGATTCGCGCGAAAAAAACGCCTTCCGAAAAGCCTAAC
CCAACTATTAGTAATTCCCGAAACAGTAACGTACCCGGCGAGTCTTTTGT
GGACCCCCAAGTGGGACAACAGCAGTGCAGGACAACGCACCCGCCGATGG
TTGTTCGCTATTATAACGTGCATTATTTTCAACAGACCAGTGGAAGTTGC
TGTGACGAATGCTCTGCGGCGAAGCTCCAACAGCGGTACCAAACAAGCAA
TTGTGCTGCACATGCTCAAGTCTGCTCAAGTAATATCCTGCCCTGTAGCG
GCGAACGCAGGAGTAGGGTCACGTAAATGCGAGAGGCAGTTTCAACGGTG
GTTTTTGTGGCGGAAATGATCTGACGTTGTTCCTATGTTTGGAGCCGAGC
GATATGTTTGAGTTTCAACCACCTGGTTTTTCAGGGGAGCTTTACCACCC
ACCGCTGACTTCGAACGTACAGAGCCTCGCAAAATGTTCTCCAACGCTGA
GTTGGTTTTGCCATTCGCACGTCTGGTAACAAATTTGTGCTCACAGCCGT
AAGTAGTTTCTGCTTCAAAATTCGAAGATCTCTCAGATCGGAGGACGTAG
GAATGTAGCTGTTTGCCCCATCCCCCGAAAGTGATGCGTGATCAACGGTC
GACTTACTGCGGCGAGAACTAACGATAAGACCCGCGCGTTTCCTTTCTCC
CAGGATTTCTGGTGTCGGTGGACACATACATGAACCTCCTTCTTACATCT
ACAGAGGAATACGTGGACGGCGAGTTCGCGGGCAACTTGGGGGACGTGCT
CATCCGCTGTAACAACGTCTTGTACCTTAGGGGGGCAGAAGAGGACGAGG
CCAACGTAAAAGCGGATGGGGCCGACGGGAGGGCCAATGGGATGGACGAG
GAGGAGGATGAAGGCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig714:3718..6135+

>mRNA_E_fasciculatus_S2_contig714.15316.1 ID=mRNA_E_fasciculatus_S2_contig714.15316.1|Name=mRNA_E_fasciculatus_S2_contig714.15316.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=306bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig714:3718..6135+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGACACCTGTGAACCCGAAGCCCTTCTTGAATGAGCTCACAGGGAA
GCCGGTGATGGTGAAGCTGAAGTGGGGCATGGAATACAAGGGATTTCTGG
TGTCGGTGGACACATACATGAACCTCCTTCTTACATCTACAGAGGAATAC
GTGGACGGCGAGTTCGCGGGCAACTTGGGGGACGTGCTCATCCGCTGTAA
CAACGTCTTGTACCTTAGGGGGGCAGAAGAGGACGAGGCCAACGTAAAAG
CGGATGGGGCCGACGGGAGGGCCAATGGGATGGACGAGGAGGAGGATGAA
GGCTGA
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