mRNA_E_fasciculatus_S2_contig7115.15291.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig7115.15291.1
Unique Name	mRNA_E_fasciculatus_S2_contig7115.15291.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.
Match: OmpA (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.640e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1

Query:    1 ELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP 126
            ELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP
Sbjct:  361 ELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP 402

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BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.640e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1

Query:    1 ELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP 126
            ELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP
Sbjct:   30 ELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP 71

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BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.
Match: OmpA (domain-containing protein n=3 Tax=Myxococcaceae TaxID=31 RepID=F8CLT6_MYXFH)

HSP 1 Score: 51.2 bits (121), Expect = 2.780e-6
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1

Query:   10 GSHTVAIAAVDEAGNVDPEPAVWTWSVDAR-PRTSLTSAP 126
            G HT+A+ AVD AGNVDP PAV TW+VDA  P T++ S P
Sbjct:  856 GEHTLAVYAVDAAGNVDPTPAVRTWTVDATAPETTIVSGP 895

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BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.
Match: Ig-like (domain-containing protein n=1 Tax=Citreicoccus inhibens TaxID=2849499 RepID=UPI001C24EADC)

HSP 1 Score: 50.8 bits (120), Expect = 3.800e-6
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   10 GSHTVAIAAVDEAGNVDPEPAVWTWSVDAR-PRTSLTSAP 126
            GSHT+ + AVD AGNVDP PA +TW+VD   P TS TS P
Sbjct:  694 GSHTLQVRAVDAAGNVDPTPASYTWTVDTTAPDTSFTSTP 733

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BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.
Match: OmpA (family protein n=1 Tax=Pyxidicoccus fallax TaxID=394095 RepID=A0A848LS83_9DELT)

HSP 1 Score: 50.4 bits (119), Expect = 5.200e-6
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   10 GSHTVAIAAVDEAGNVDPEPAVWTWSVDA-RPRTSLTSAP 126
            GSHT+ + AVD AGNVDP PA +TW+VD   P TS+ S P
Sbjct:  751 GSHTLEVRAVDAAGNVDPTPATYTWTVDTVAPDTSIVSGP 790

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BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.
Match: Internalin, (putative n=2 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4WQC5_9DELT)

HSP 1 Score: 50.1 bits (118), Expect = 7.120e-6
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1

Query:   10 GSHTVAIAAVDEAGNVDPEPAVWTWSVDA-RPRTSLTSAP 126
            GSHT+ + AVD AGNVDP PAV+TW++D   P T+L+  P
Sbjct:  999 GSHTLQVRAVDAAGNVDPTPAVYTWTIDTIAPDTTLSGGP 1038

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BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.
Match: Ig-like (domain-containing protein n=2 Tax=Pyxidicoccus sp. SCPEA002 TaxID=2813578 RepID=UPI001F50C2B8)

HSP 1 Score: 49.7 bits (117), Expect = 9.740e-6
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   10 GSHTVAIAAVDEAGNVDPEPAVWTWSVDARPR-TSLTSAP 126
            GSHT+ + AVD AGNVDP PA +TW+VD  P  T++ S P
Sbjct: 1127 GSHTLEVRAVDSAGNVDPTPATYTWTVDTSPPDTTIVSGP 1166

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BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.
Match: Ig-like (domain-containing protein n=1 Tax=Pyxidicoccus trucidator TaxID=2709662 RepID=UPI001F0823DD)

HSP 1 Score: 49.3 bits (116), Expect = 1.330e-5
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1

Query:   10 GSHTVAIAAVDEAGNVDPEPAVWTWSVD-ARPRTSLTSAP 126
            G+HT+A+ AVD AGNVDP PA + W+VD A P T++ S P
Sbjct:  709 GNHTLAVRAVDAAGNVDPTPATYAWTVDTALPDTTIVSGP 748

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BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.
Match: Ig-like (domain-containing protein n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F1BC852)

HSP 1 Score: 49.3 bits (116), Expect = 1.330e-5
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1

Query:   10 GSHTVAIAAVDEAGNVDPEPAVWTWSVDA-RPRTSLTSAP 126
            G HT+A+ AVD AGNVDP PA +TW+VD   P T++ S P
Sbjct:  675 GPHTLAVRAVDTAGNVDPTPATYTWTVDTVAPDTTIVSGP 714

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.
Match: Uncharacterized (protein n=7 Tax=Myxococcus TaxID=32 RepID=A0A7D5SM84_9DELT)

HSP 1 Score: 49.3 bits (116), Expect = 1.330e-5
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1

Query:   10 GSHTVAIAAVDEAGNVDPEPAVWTWSVD-ARPRTSLTSAP 126
            GSHT+ + AVD AGNVDP PA +TW++D + P T+L+  P
Sbjct: 1004 GSHTLQVRAVDSAGNVDPTPATYTWTIDTSAPDTTLSGGP 1043

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig7115.15291.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
OmpA	2.640e-19	100.00	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
Uncharacterized	2.640e-19	100.00	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
OmpA	2.780e-6	62.50	domain-containing protein n=3 Tax=Myxococcaceae Ta...	[more]
Ig-like	3.800e-6	62.50	domain-containing protein n=1 Tax=Citreicoccus inh...	[more]
OmpA	5.200e-6	60.00	family protein n=1 Tax=Pyxidicoccus fallax TaxID=3...	[more]
Internalin,	7.120e-6	57.50	putative n=2 Tax=Myxococcus hansupus TaxID=1297742...	[more]
Ig-like	9.740e-6	57.50	domain-containing protein n=2 Tax=Pyxidicoccus sp....	[more]
Ig-like	1.330e-5	57.50	domain-containing protein n=1 Tax=Pyxidicoccus tru...	[more]
Ig-like	1.330e-5	57.50	domain-containing protein n=1 Tax=Myxococcus stipi...	[more]
Uncharacterized	1.330e-5	55.00	protein n=7 Tax=Myxococcus TaxID=32 RepID=A0A7D5SM...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig7115	contig	E_fasciculatus_S2_contig7115:6019..6144 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	89.7
Seed ortholog evalue	3.4e-16
Seed eggNOG ortholog	2880.D8LBK9
Model size	126
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
EggNOG free text desc.	cytoskeletal protein binding
EggNOG OGs	KOG0613@1,KOG0613@2759
Cds size	126
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842373.48682-CDS-E_fasciculatus_S2_contig7115:6018..6144	1696842373.48682-CDS-E_fasciculatus_S2_contig7115:6018..6144	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7115 6019..6144 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig7115.15291.1	prot_E_fasciculatus_S2_contig7115.15291.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig7115 6019..6144 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig7115:6019..6144-
coding sequence from alignment at E_fasciculatus_S2_contig7115:6019..6144-

protein sequence of mRNA_E_fasciculatus_S2_contig7115.15291.1

>prot_E_fasciculatus_S2_contig7115.15291.1 ID=prot_E_fasciculatus_S2_contig7115.15291.1|Name=mRNA_E_fasciculatus_S2_contig7115.15291.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=42bp
ELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAP

mRNA from alignment at E_fasciculatus_S2_contig7115:6019..6144-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig7115.15291.1 ID=mRNA_E_fasciculatus_S2_contig7115.15291.1|Name=mRNA_E_fasciculatus_S2_contig7115.15291.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=126bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7115:6019..6144- (Ectocarpus fasciculatus EfasUO2)
GAACTGCCGGGGTCGCACACGGTGGCCATCGCGGCGGTGGACGAGGCGGG
CAACGTCGACCCCGAGCCGGCGGTGTGGACATGGTCTGTCGACGCGCGTC
CAAGGACGTCCCTGACAAGCGCCCCA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7115:6019..6144-

>mRNA_E_fasciculatus_S2_contig7115.15291.1 ID=mRNA_E_fasciculatus_S2_contig7115.15291.1|Name=mRNA_E_fasciculatus_S2_contig7115.15291.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=126bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7115:6019..6144- (Ectocarpus fasciculatus EfasUO2)
GAACTGCCGGGGTCGCACACGGTGGCCATCGCGGCGGTGGACGAGGCGGG
CAACGTCGACCCCGAGCCGGCGGTGTGGACATGGTCTGTCGACGCGCGTC
CAAGGACGTCCCTGACAAGCGCCCCA