mRNA_E_fasciculatus_S2_contig7108.15285.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7108.15285.1
Unique NamemRNA_E_fasciculatus_S2_contig7108.15285.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7108.15285.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD4_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.090e-46
Identity = 110/143 (76.92%), Postives = 114/143 (79.72%), Query Frame = -2 
Query:    6 PSSVNRVPHNPNPRNRFAPMAESEVARFLQPGVDRYLFSAAGNRAGGGQEIIGFDEDHGSTAAXXXXXXXXXXX----------IGRRLLVVGESTGRDGDGARTVLASAGEDAR--RPSSTPLDGWQTNQTSTTGNGRRRRS 398
            PS VNRVPHNP  RNRFAPMAESEVARFLQ G DRYL SAAGN AGGG EIIG +EDHG+TAA  XXXXXXXXX          IGRRLLVVGESTGRD DGARTVL SA E+AR  R SSTPLDGWQTN+TSTTGN RR RS
Sbjct:  642 PSLVNRVPHNP--RNRFAPMAESEVARFLQQGNDRYLSSAAGNGAGGGHEIIGLNEDHGTTAAAVXXXXXXXXXXXXXXXXXXXIGRRLLVVGESTGRDEDGARTVLVSASENARLFRLSSTPLDGWQTNRTSTTGNKRRERS 782
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BLAST of mRNA_E_fasciculatus_S2_contig7108.15285.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW7_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.250e-34
Identity = 89/126 (70.63%), Postives = 95/126 (75.40%), Query Frame = -2 
Query:   45 PSSVNRVPHNPNPRNRFAPMAESEVARFLQPGVDRYLFSAAGNRAGGGQEIIGFDEDHGSTAAXXXXXXXXXXX------IGRRLLVVGESTGRDGDGARTVLASAGEDAR--RPSSTPLDGWQTN 398
            PS VNR+P+NP  RNRFAPMAESEVARFL+ G DRYL SA          IIG +EDHG+   XXXXXXXXXX       IGRRLLVVGESTGRDGDGARTVL SA EDAR  RPS+TPLDGWQTN
Sbjct:  309 PSLVNRMPNNP--RNRFAPMAESEVARFLKQGNDRYLSSAXXXXXXXXXXIIGLNEDHGTXXXXXXXXXXXXXAGGPGTGIGRRLLVVGESTGRDGDGARTVLVSASEDARLFRPSATPLDGWQTN 432
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7108.15285.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.090e-4676.92protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.250e-3470.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7108contigE_fasciculatus_S2_contig7108:4654..5053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size401
Hectar predicted targeting categoryother localisation
Exons1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842373.057983-CDS-E_fasciculatus_S2_contig7108:4653..50521696842373.057983-CDS-E_fasciculatus_S2_contig7108:4653..5052Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7108 4654..5052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7108.15285.1prot_E_fasciculatus_S2_contig7108.15285.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7108 4654..5052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7108.15285.1

>prot_E_fasciculatus_S2_contig7108.15285.1 ID=prot_E_fasciculatus_S2_contig7108.15285.1|Name=mRNA_E_fasciculatus_S2_contig7108.15285.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=133bp
GYDRLLRPFPVVEVWFVCHPSSGVELGRRASSPADANTVRAPSPSRPVLS
PTTSNRLPIPAPAPSAAAAAAAVLPWSSSKPMISCPPPALFPAALKRYRS
TPGWRNLATSLSAMGAKRFRGLGLWGTRFTEDG
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mRNA from alignment at E_fasciculatus_S2_contig7108:4654..5053+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7108.15285.1 ID=mRNA_E_fasciculatus_S2_contig7108.15285.1|Name=mRNA_E_fasciculatus_S2_contig7108.15285.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=400bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7108:4654..5053+ (Ectocarpus fasciculatus EfasUO2)
GGTTACGACCGCCTTCTTCGCCCATTCCCCGTCGTCGAAGTTTGGTTCGT
CTGCCACCCGTCAAGCGGGGTAGAACTCGGTCGTCGTGCATCCTCGCCTG
CTGACGCCAATACTGTACGAGCACCATCTCCGTCTCGCCCGGTACTTTCC
CCGACCACAAGCAACCGTCTACCGATTCCGGCGCCTGCCCCCTCGGCGGC
GGCAGCGGCAGCGGCAGTACTGCCATGGTCCTCGTCAAAGCCGATGATCT
CTTGTCCTCCCCCAGCCCTGTTCCCTGCGGCGCTGAAGAGGTACCGGTCG
ACACCTGGCTGGAGAAACCTTGCTACCTCGCTCTCCGCCATGGGCGCGAA
GCGATTTCGAGGGTTAGGGTTGTGGGGCACCCGATTCACCGAGGATGGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7108:4654..5053+

>mRNA_E_fasciculatus_S2_contig7108.15285.1 ID=mRNA_E_fasciculatus_S2_contig7108.15285.1|Name=mRNA_E_fasciculatus_S2_contig7108.15285.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=399bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7108:4654..5053+ (Ectocarpus fasciculatus EfasUO2)
GGTTACGACCGCCTTCTTCGCCCATTCCCCGTCGTCGAAGTTTGGTTCGT
CTGCCACCCGTCAAGCGGGGTAGAACTCGGTCGTCGTGCATCCTCGCCTG
CTGACGCCAATACTGTACGAGCACCATCTCCGTCTCGCCCGGTACTTTCC
CCGACCACAAGCAACCGTCTACCGATTCCGGCGCCTGCCCCCTCGGCGGC
GGCAGCGGCAGCGGCAGTACTGCCATGGTCCTCGTCAAAGCCGATGATCT
CTTGTCCTCCCCCAGCCCTGTTCCCTGCGGCGCTGAAGAGGTACCGGTCG
ACACCTGGCTGGAGAAACCTTGCTACCTCGCTCTCCGCCATGGGCGCGAA
GCGATTTCGAGGGTTAGGGTTGTGGGGCACCCGATTCACCGAGGATGGG
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