mRNA_E_fasciculatus_S2_contig7100.15278.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7100.15278.1
Unique NamemRNA_E_fasciculatus_S2_contig7100.15278.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7100.15278.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA9_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 1.300e-69
Identity = 210/327 (64.22%), Postives = 221/327 (67.58%), Query Frame = 1 
Query:    1 QRSLSPAPSHGALASRFVFGAGPPPSTAAPPSPGRSKMTRTGLKTVSPWSNNRRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWTRIGFGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSKSIAFSHADEASSPA---GGGGEVGSRSTSGGTDRPRESWFGSYVPVLSSSNNNNRGTGGELDCMEVDTGDRSGCSSSLRASAAFGAMGGXXXXXXXXXXXX-HDADNRAAALAAATLAAEARTGPAAWAAPGCGAGGGDVMPKLSTNNMDE 969
            +RSLSPAPSHGA AS +VFG GPPP+ AAPPSPGRSKMTRTGL TVSPWS+NRRF                            XXXXXXXXXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXXXXXXXXXXXX                        GRSK+I F HADE SSP    GGGGEVGSR +SGG DRPRESWFG YVPVLSSSN+NNR  GGEL  MEVDTG+R GC SS RASAAFG MG XXXXX         DAD RAAALAAATLAAE+RT P+AWAAP CGAGGGDVMPKLSTN+MDE
Sbjct:   22 KRSLSPAPSHGAPASGYVFGTGPPPA-AAPPSPGRSKMTRTGLTTVSPWSSNRRFSSSSSQGEPVAAGEAVGGHRGTAFMTLQXXXXXXXXXXXXXXXXXXXXXXXXX-----------------XXXXXXXXXXXXXXXXXXXXXXXSFATFGDTHEAQEKRAAAEAAEAGGRSKNIDFPHADEVSSPGSVGGGGGEVGSRGSSGGADRPRESWFGGYVPVLSSSNSNNRSKGGELGGMEVDTGERFGCYSSRRASAAFGVMGXXXXXXTSVGSASTDDADIRAAALAAATLAAESRTLPSAWAAPACGAGGGDVMPKLSTNDMDE 330
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BLAST of mRNA_E_fasciculatus_S2_contig7100.15278.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K327_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 7.950e-15
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 QRSLSPAPSHGALASRFVFGAGPPPSTAAPPSPGRSKMTRTGLKTVSPWSNNRRF 165
            +RSLSPAPSHGA AS  +FG GPPP+ AAP SPGRSKMTRTGLKTVSPWS+NR F
Sbjct:   19 KRSLSPAPSHGAPASGSLFGKGPPPA-AAPRSPGRSKMTRTGLKTVSPWSSNRLF 72
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7100.15278.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.300e-6964.22protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.950e-1580.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7100contigE_fasciculatus_S2_contig7100:482..1561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1080
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001450.1
Cds size1080
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842372.384476-CDS-E_fasciculatus_S2_contig7100:481..15611696842372.384476-CDS-E_fasciculatus_S2_contig7100:481..1561Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7100 482..1561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7100.15278.1prot_E_fasciculatus_S2_contig7100.15278.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7100 482..1561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7100.15278.1

>prot_E_fasciculatus_S2_contig7100.15278.1 ID=prot_E_fasciculatus_S2_contig7100.15278.1|Name=mRNA_E_fasciculatus_S2_contig7100.15278.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=360bp
QRSLSPAPSHGALASRFVFGAGPPPSTAAPPSPGRSKMTRTGLKTVSPWS
NNRRFSSSSLSSQGAPPAAAASQQQPGFLAGAAAVGAHDGAAALMMPQQE
QQPPAGAAWTRIGFGTTTTDFNHHADFFRRVSSSSSVMAAAPAACSTVNP
SPPPAAAAAAAEAVEAAAAEAGGRSKSIAFSHADEASSPAGGGGEVGSRS
TSGGTDRPRESWFGSYVPVLSSSNNNNRGTGGELDCMEVDTGDRSGCSSS
LRASAAFGAMGGGGGGTSAGSASTHDADNRAAALAAATLAAEARTGPAAW
AAPGCGAGGGDVMPKLSTNNMDEDDDNMGTGGDWGGGGGGMGHGASGGGP
IPPHTRTFG*
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mRNA from alignment at E_fasciculatus_S2_contig7100:482..1561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7100.15278.1 ID=mRNA_E_fasciculatus_S2_contig7100.15278.1|Name=mRNA_E_fasciculatus_S2_contig7100.15278.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1080bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7100:482..1561+ (Ectocarpus fasciculatus EfasUO2)
CAGCGATCCCTGAGCCCAGCACCATCTCATGGGGCTCTCGCCTCACGCTT
CGTCTTCGGCGCGGGACCGCCGCCGTCCACCGCCGCTCCGCCTTCGCCGG
GGCGGAGCAAGATGACGCGGACCGGCCTCAAGACCGTGTCGCCGTGGTCC
AACAACCGGCGGTTTTCATCATCATCATTGTCGTCGCAGGGGGCACCGCC
AGCGGCGGCGGCGTCGCAGCAGCAGCCAGGTTTCTTGGCGGGAGCGGCGG
CGGTGGGAGCACATGACGGGGCAGCAGCGCTCATGATGCCACAGCAGGAG
CAGCAGCCTCCCGCTGGCGCTGCTTGGACAAGGATTGGCTTTGGAACGAC
GACTACCGACTTCAACCATCACGCCGACTTTTTCAGACGCGTGTCCTCTT
CCTCCTCGGTGATGGCGGCGGCGCCTGCGGCTTGCTCAACGGTCAACCCT
AGCCCTCCCCCGGCGGCGGCGGCGGCGGCGGCGGAGGCGGTGGAGGCGGC
GGCGGCTGAAGCGGGCGGGCGCTCCAAGAGTATCGCGTTCTCCCACGCAG
ATGAGGCCTCGTCCCCGGCGGGTGGTGGTGGAGAGGTGGGGTCACGGAGC
ACCAGCGGCGGCACGGATAGGCCTCGGGAGAGCTGGTTTGGAAGCTACGT
CCCGGTTCTGAGCAGCAGCAATAACAACAACAGAGGCACGGGTGGCGAAC
TCGATTGTATGGAGGTCGACACGGGGGATAGGTCCGGGTGCAGCTCCTCT
CTCCGAGCTTCTGCGGCGTTCGGTGCGATGGGCGGCGGTGGCGGCGGAAC
CAGTGCCGGTTCGGCGTCGACACACGACGCCGACAATAGAGCGGCGGCGC
TGGCCGCGGCCACGCTAGCGGCGGAGGCAAGAACCGGTCCCGCAGCATGG
GCTGCCCCTGGTTGCGGTGCTGGCGGAGGGGACGTGATGCCCAAGCTCTC
CACCAACAACATGGACGAGGACGACGACAACATGGGCACGGGTGGCGACT
GGGGCGGGGGCGGGGGTGGGATGGGTCACGGCGCCAGCGGGGGGGGTCCG
ATCCCACCGCACACCCGGACCTTTGGTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7100:482..1561+

>mRNA_E_fasciculatus_S2_contig7100.15278.1 ID=mRNA_E_fasciculatus_S2_contig7100.15278.1|Name=mRNA_E_fasciculatus_S2_contig7100.15278.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1080bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7100:482..1561+ (Ectocarpus fasciculatus EfasUO2)
CAGCGATCCCTGAGCCCAGCACCATCTCATGGGGCTCTCGCCTCACGCTT
CGTCTTCGGCGCGGGACCGCCGCCGTCCACCGCCGCTCCGCCTTCGCCGG
GGCGGAGCAAGATGACGCGGACCGGCCTCAAGACCGTGTCGCCGTGGTCC
AACAACCGGCGGTTTTCATCATCATCATTGTCGTCGCAGGGGGCACCGCC
AGCGGCGGCGGCGTCGCAGCAGCAGCCAGGTTTCTTGGCGGGAGCGGCGG
CGGTGGGAGCACATGACGGGGCAGCAGCGCTCATGATGCCACAGCAGGAG
CAGCAGCCTCCCGCTGGCGCTGCTTGGACAAGGATTGGCTTTGGAACGAC
GACTACCGACTTCAACCATCACGCCGACTTTTTCAGACGCGTGTCCTCTT
CCTCCTCGGTGATGGCGGCGGCGCCTGCGGCTTGCTCAACGGTCAACCCT
AGCCCTCCCCCGGCGGCGGCGGCGGCGGCGGCGGAGGCGGTGGAGGCGGC
GGCGGCTGAAGCGGGCGGGCGCTCCAAGAGTATCGCGTTCTCCCACGCAG
ATGAGGCCTCGTCCCCGGCGGGTGGTGGTGGAGAGGTGGGGTCACGGAGC
ACCAGCGGCGGCACGGATAGGCCTCGGGAGAGCTGGTTTGGAAGCTACGT
CCCGGTTCTGAGCAGCAGCAATAACAACAACAGAGGCACGGGTGGCGAAC
TCGATTGTATGGAGGTCGACACGGGGGATAGGTCCGGGTGCAGCTCCTCT
CTCCGAGCTTCTGCGGCGTTCGGTGCGATGGGCGGCGGTGGCGGCGGAAC
CAGTGCCGGTTCGGCGTCGACACACGACGCCGACAATAGAGCGGCGGCGC
TGGCCGCGGCCACGCTAGCGGCGGAGGCAAGAACCGGTCCCGCAGCATGG
GCTGCCCCTGGTTGCGGTGCTGGCGGAGGGGACGTGATGCCCAAGCTCTC
CACCAACAACATGGACGAGGACGACGACAACATGGGCACGGGTGGCGACT
GGGGCGGGGGCGGGGGTGGGATGGGTCACGGCGCCAGCGGGGGGGGTCCG
ATCCCACCGCACACCCGGACCTTTGGTTGA
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