mRNA_E_fasciculatus_S2_contig71.15271.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig71.15271.1
Unique NamemRNA_E_fasciculatus_S2_contig71.15271.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig71.15271.1 vs.
Match: ILEI (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G0_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.050e-32
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:    4 GTAGADAGNGEGTSVEDFPPLLGESYLRASTHSTATRMRSRLFQRIHVALMRQAYRTMRRMKAEAGGK 207
            GTAGAD GNGEGTSVEDFPPLLGESYLRASTHSTATRMRSRLFQRIHVALMRQA+RTMRRMKAEAGGK
Sbjct:   99 GTAGADTGNGEGTSVEDFPPLLGESYLRASTHSTATRMRSRLFQRIHVALMRQAFRTMRRMKAEAGGK 166
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BLAST of mRNA_E_fasciculatus_S2_contig71.15271.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K114_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.700e-17
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 SGTAGADAGNGEGTSVEDFPPLLGESYLRASTHSTATRMRSRLFQ 135
            SGTAGAD GNGEGTSVEDFPPLLG+SYLRASTHST TRMRSRLFQ
Sbjct:   67 SGTAGADTGNGEGTSVEDFPPLLGKSYLRASTHSTTTRMRSRLFQ 111
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig71.15271.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
ILEI1.050e-3297.06domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized2.700e-1793.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig71contigE_fasciculatus_S2_contig71:1573..2168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score129.4
Seed ortholog evalue6.4e-28
Seed eggNOG ortholog2880.D7G0G0
Model size209
KEGG koko:K21991
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Cds size207
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842371.120598-CDS-E_fasciculatus_S2_contig71:1574..16461696842371.120598-CDS-E_fasciculatus_S2_contig71:1574..1646Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig71 1575..1646 -
1696842371.1320229-CDS-E_fasciculatus_S2_contig71:2033..21681696842371.1320229-CDS-E_fasciculatus_S2_contig71:2033..2168Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig71 2034..2168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig71.15271.1prot_E_fasciculatus_S2_contig71.15271.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig71 1575..2168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig71.15271.1

>prot_E_fasciculatus_S2_contig71.15271.1 ID=prot_E_fasciculatus_S2_contig71.15271.1|Name=mRNA_E_fasciculatus_S2_contig71.15271.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=69bp
SGTAGADAGNGEGTSVEDFPPLLGESYLRASTHSTATRMRSRLFQRIHVA
LMRQAYRTMRRMKAEAGGK
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mRNA from alignment at E_fasciculatus_S2_contig71:1573..2168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig71.15271.1 ID=mRNA_E_fasciculatus_S2_contig71.15271.1|Name=mRNA_E_fasciculatus_S2_contig71.15271.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=596bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig71:1573..2168- (Ectocarpus fasciculatus EfasUO2)
AGCGGAACAGCGGGAGCGGACGCGGGCAACGGCGAGGGCACGAGCGTGGA
GGACTTCCCGCCCCTGCTGGGAGAGAGCTACTTGCGAGCCTCGACGCATT
CCACGGCGACCCGGATGCGATCAAGACTGTTTCAGGTGTGCGCATGCGCT
CGAACGTCTTTACTGTTCGGATTCACGCGCTAACCTAACCGGCTGACCAA
TGGAAATACGTCAGTCTGGGTGCGGTTACAAACGGAGAACGATTTCAATG
TGTGCGTGTGTGGTTGTGTGGTACCGTCGTTTTGAGGTGCGACACCAGAG
ATTGCGGATGCGTTCGTTTCTGGCGACGGGTGCAACCAGACTTGCATTAT
GCTTCGGAGCGGGAGTTGGAGTACTGAATACCTTGCCCACATGTCTCGTG
CCATGCGTGGTCTGAGTCAAGTGTCTGGCTTTCATGTATTTCCTCTGGTT
GATCGGTCTGTTGCCAGCTCAACCCCCCCCCCCTCCAAACGCTACGTCTC
ATGCACTCGCACTCGCCTGTAGCGCATACATGTGGCTCTCATGCGGCAAG
CATACCGTACGATGAGAAGGATGAAGGCGGAGGCAGGTGGCAAGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig71:1573..2168-

>mRNA_E_fasciculatus_S2_contig71.15271.1 ID=mRNA_E_fasciculatus_S2_contig71.15271.1|Name=mRNA_E_fasciculatus_S2_contig71.15271.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=207bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig71:1573..2168- (Ectocarpus fasciculatus EfasUO2)
AGCGGAACAGCGGGAGCGGACGCGGGCAACGGCGAGGGCACGAGCGTGGA
GGACTTCCCGCCCCTGCTGGGAGAGAGCTACTTGCGAGCCTCGACGCATT
CCACGGCGACCCGGATGCGATCAAGACTGTTTCAGCGCATACATGTGGCT
CTCATGCGGCAAGCATACCGTACGATGAGAAGGATGAAGGCGGAGGCAGG
TGGCAAG
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