mRNA_E_fasciculatus_S2_contig709.15262.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig709.15262.1
Unique NamemRNA_E_fasciculatus_S2_contig709.15262.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig709.15262.1 vs.
Match: Ankyrin (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G641_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 2.890e-117
Identity = 243/258 (94.19%), Postives = 245/258 (94.96%), Query Frame = 1 
Query:    1 MSNPDDVFCTNVQRPVDVAHPVPPVPCFEEHRRLCNAVLDGRVDVLRSLLVDDELDVNARSKTGNTAGHEAAIEGRVEEMSTLICHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQCGSCIRGFTDFGKAQMLEEHCHIERERLEKVRRNKEILYGRDLDVQPREDDFRSMRACAITPNDRALICASLQASAVTLRCIAAGLQTVEKALARRAQRRKHARRRKKVVGGHK 774
            MSNPDDVFCTNVQRPVDVAHPV PVPCFEEHRRLCNAVLDGRVDVLRSLLVD ELDVNARSKTGNTAGHEAA EGRVEEMSTLICHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AQCGSCIRGFTDFGKAQMLEEHC IERERL KVRRNKEILYGRDLDVQPREDDFRSMRACAIT +D+ALICASLQASAVTLRCIAAGLQ  EKALAR AQRRKH RRRK VVGG K
Sbjct:    1 MSNPDDVFCTNVQRPVDVAHPVAPVPCFEEHRRLCNAVLDGRVDVLRSLLVDGELDVNARSKTGNTAGHEAAAEGRVEEMSTLICHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAQCGSCIRGFTDFGKAQMLEEHCQIERERLGKVRRNKEILYGRDLDVQPREDDFRSMRACAITTDDKALICASLQASAVTLRCIAAGLQLAEKALARGAQRRKHTRRRK-VVGGRK 257
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig709.15262.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Ankyrin2.890e-11794.19n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig709contigE_fasciculatus_S2_contig709:22691..24057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score346.7
Seed ortholog evalue9.6e-93
Seed eggNOG ortholog2880.D7G641
Model size777
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_005040.1
Cds size777
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842370.0537732-CDS-E_fasciculatus_S2_contig709:22690..229001696842370.0537732-CDS-E_fasciculatus_S2_contig709:22690..22900Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig709 22691..22900 +
1696842370.0641108-CDS-E_fasciculatus_S2_contig709:23202..235291696842370.0641108-CDS-E_fasciculatus_S2_contig709:23202..23529Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig709 23203..23529 +
1696842370.0804515-CDS-E_fasciculatus_S2_contig709:23817..240571696842370.0804515-CDS-E_fasciculatus_S2_contig709:23817..24057Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig709 23818..24057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig709.15262.1prot_E_fasciculatus_S2_contig709.15262.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig709 22691..24057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig709.15262.1

>prot_E_fasciculatus_S2_contig709.15262.1 ID=prot_E_fasciculatus_S2_contig709.15262.1|Name=mRNA_E_fasciculatus_S2_contig709.15262.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=259bp
MSNPDDVFCTNVQRPVDVAHPVPPVPCFEEHRRLCNAVLDGRVDVLRSLL
VDDELDVNARSKTGNTAGHEAAIEGRVEEMSTLICHGLDIDAVNDEGNTA
LHLASRHGRVKVARRLAEAFPNEELMNHRGFTALDEAMQAGRAQCGSCIR
GFTDFGKAQMLEEHCHIERERLEKVRRNKEILYGRDLDVQPREDDFRSMR
ACAITPNDRALICASLQASAVTLRCIAAGLQTVEKALARRAQRRKHARRR
KKVVGGHK*
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mRNA from alignment at E_fasciculatus_S2_contig709:22691..24057+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig709.15262.1 ID=mRNA_E_fasciculatus_S2_contig709.15262.1|Name=mRNA_E_fasciculatus_S2_contig709.15262.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1367bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig709:22691..24057+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCAATCCGGATGATGTGTTCTGTACCAACGTCCAAAGACCAGTTGA
TGTGGCGCATCCTGTTCCGCCAGTGCCATGCTTCGAGGAGCACCGGCGGC
TTTGCAATGCTGTCCTCGACGGGAGGGTGGACGTGCTTCGGAGCTTGTTG
GTGGATGACGAGCTGGACGTAAACGCACGAAGCAAAACAGGAAACACGGC
CGGGCACGAGGTAAATGTGTAGTCTAGACTAAAAGATGTAATGTGTGTTG
TTGTTGTTGTTGTTGCTGTTGCCTTCGTCTCCGCTCAGTACATACATACA
TTTATTCGCGTTGCATTCGTCGCCGAATGATATCATCTCCTTTGCCACGT
CTAAATTTGCCCTACACTCATGACACCATATGGCCGTTATGTGGGCCCCG
GCTGATACTTGTCAGAAACATTCAAGTACACGAAACAAATTGTAGACTAT
AGACTGGTACCAGAACAAATGGACGAACACCCACACATACATCTTATCCT
GCCGGCACATAGGCGGCGATAGAGGGTCGCGTGGAGGAAATGTCTACACT
CATTTGCCACGGATTGGACATTGATGCGGTCAATGACGAGGGGAACACGG
CTCTACACCTAGCCTCGAGGCACGGCAGGGTCAAGGTGGCAAGACGCTTG
GCAGAGGCCTTCCCGAACGAGGAGCTGATGAACCACAGAGGGTTCACCGC
GCTTGACGAGGCTATGCAAGCCGGGCGCGCGCAATGCGGCAGCTGCATTC
GAGGCTTCACCGATTTCGGGAAGGCCCAAATGCTGGAGGAGCACTGCCAC
ATCGAGAGAGAGAGGCTGGAGAAGGTGCGGAGGAATAAGGTACGAGGCGG
TGTTTACGTGCCGACTTGCCGATATTGCAGCCCCTCTACACGGTACGTGG
TAGGTGTGTTGTTTGTAGCGTGGACTGTTTCCGGGTGAAAATCTGTCTGT
ACGTCTTGTGTGAGCTTCAAAATTCTCCCTCTTTCGATACAACCGAAACA
CAACTCTCATTGCGTACACGCTTTGAGTTGCTCGCATGCCTGTGCGTTTG
AAGTCTTCGCAAATAGAGAGATCATGGTCGTGCGACGTGCTTGCCGTGCC
GCAATCAACTTGATCTTTCTTTTACAGGAAATCCTGTACGGCCGGGATTT
GGATGTTCAGCCTCGCGAGGACGATTTCCGAAGCATGCGCGCCTGTGCCA
TTACACCCAACGACAGGGCCCTCATCTGCGCCTCGTTGCAAGCGAGTGCC
GTGACACTGCGCTGCATCGCAGCAGGTCTCCAGACCGTGGAGAAGGCGTT
GGCGAGGCGTGCACAGCGTCGAAAACACGCCCGCCGAAGAAAAAAAGTCG
TGGGCGGGCACAAGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig709:22691..24057+

>mRNA_E_fasciculatus_S2_contig709.15262.1 ID=mRNA_E_fasciculatus_S2_contig709.15262.1|Name=mRNA_E_fasciculatus_S2_contig709.15262.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=777bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig709:22691..24057+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCAATCCGGATGATGTGTTCTGTACCAACGTCCAAAGACCAGTTGA
TGTGGCGCATCCTGTTCCGCCAGTGCCATGCTTCGAGGAGCACCGGCGGC
TTTGCAATGCTGTCCTCGACGGGAGGGTGGACGTGCTTCGGAGCTTGTTG
GTGGATGACGAGCTGGACGTAAACGCACGAAGCAAAACAGGAAACACGGC
CGGGCACGAGGCGGCGATAGAGGGTCGCGTGGAGGAAATGTCTACACTCA
TTTGCCACGGATTGGACATTGATGCGGTCAATGACGAGGGGAACACGGCT
CTACACCTAGCCTCGAGGCACGGCAGGGTCAAGGTGGCAAGACGCTTGGC
AGAGGCCTTCCCGAACGAGGAGCTGATGAACCACAGAGGGTTCACCGCGC
TTGACGAGGCTATGCAAGCCGGGCGCGCGCAATGCGGCAGCTGCATTCGA
GGCTTCACCGATTTCGGGAAGGCCCAAATGCTGGAGGAGCACTGCCACAT
CGAGAGAGAGAGGCTGGAGAAGGTGCGGAGGAATAAGGAAATCCTGTACG
GCCGGGATTTGGATGTTCAGCCTCGCGAGGACGATTTCCGAAGCATGCGC
GCCTGTGCCATTACACCCAACGACAGGGCCCTCATCTGCGCCTCGTTGCA
AGCGAGTGCCGTGACACTGCGCTGCATCGCAGCAGGTCTCCAGACCGTGG
AGAAGGCGTTGGCGAGGCGTGCACAGCGTCGAAAACACGCCCGCCGAAGA
AAAAAAGTCGTGGGCGGGCACAAGTAG
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