mRNA_E_fasciculatus_S2_contig7082.15250.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7082.15250.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE) HSP 1 Score: 179 bits (453), Expect = 3.150e-49 Identity = 91/147 (61.90%), Postives = 120/147 (81.63%), Query Frame = 1
Query: 1 KREAMVAKKTKGQRNHLKQLKTAEERVLMFAKLDLRAKWSARRKVYSRKDSFTGLAEVDEHLRKLQLLPHFVSRLELTPEEKSLPRKKRREALDAKCERGVVVNATELIDLMSSIVKYPRANYFELVCALSFMSGRGLPEILGAAEF 441
K+ + AKKTKG++ +LK+L+TA +RV+ F KLDL KWS RR ++SRK SFTGLA++D+ LRK++LLP +VSRLELTPEEKS+PR KRRE+L+ KC RG+ V+A++LID M SI++Y R NYFEL ALSF+SGRGL E+ G A+F
Sbjct: 1536 KKRSSTAKKTKGRKGYLKELQTAWDRVVSFGKLDLPGKWSGRRAIHSRKVSFTGLADIDDLLRKVRLLPPYVSRLELTPEEKSIPRIKRRESLEVKCRRGLTVHASDLIDTMESIIRYARPNYFELASALSFVSGRGLAELAGNADF 1682
BLAST of mRNA_E_fasciculatus_S2_contig7082.15250.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS3_9PHAE) HSP 1 Score: 165 bits (418), Expect = 1.600e-44 Identity = 89/151 (58.94%), Postives = 118/151 (78.15%), Query Frame = 1
Query: 1 KREAMVAKKTKGQRNHLKQLKTAEERVLMFAK---LDLRAKWSARRKVYSRKDSFTGLAEVDEHLRKLQLLPHFVSRLELTPEEKSLPRKKRREALDAKCERGVVVNATELIDLMSSIVKYPRANYFELVCALSFMSGRGLPEILGAAEFS 444
K+E+ AKK+K ++ LKQL+TA +RV+ F K LDL KWSARR ++SRK SFTGLA++D+ LRK++LLP +VSRLELTPEEKS+P+ KR+E+L+ KC RG+ V+A++LID M SI++Y R FEL CALSF+SGRGL E+ G FS
Sbjct: 1274 KKESSTAKKSKMRKGCLKQLQTAWDRVVSFGKFGKLDLPRKWSARRAIHSRKVSFTGLADIDDLLRKVRLLPPYVSRLELTPEEKSMPKIKRQESLEVKCRRGLTVHASDLIDTMESIIRYARPKCFELACALSFVSGRGLAELAGNTNFS 1424
BLAST of mRNA_E_fasciculatus_S2_contig7082.15250.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH4_9PHAE) HSP 1 Score: 106 bits (265), Expect = 6.360e-24 Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 1 KREAMVAKKTKGQRNHLKQLKTAEERVLMFAKLDLRAKWSARRKVYSRKDSFTGLAEVDEHLRKLQLLPHFVSRLELTPEEKSLPRKKRREAL 279
K+++ KKTKG++ HLKQL+ A RV+ F KLDL WSARR ++ R SFTGLAE+D+ LRK++LLP +VSRLELTPEEKSLPR KRRE+L
Sbjct: 1580 KKKSSAGKKTKGRKEHLKQLQKAWGRVVSFEKLDLTDNWSARRAIHLRTVSFTGLAEIDDLLRKVRLLPPYVSRLELTPEEKSLPRIKRRESL 1672
BLAST of mRNA_E_fasciculatus_S2_contig7082.15250.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L909_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 1.030e-20 Identity = 53/93 (56.99%), Postives = 76/93 (81.72%), Query Frame = 1
Query: 1 KREAMVAKKTKGQRNHLKQLKTAEERVLMFAKLDLRAKWSARRKVYSRKDSFTGLAEVDEHLRKLQLLPHFVSRLELTPEEKSLPRKKRREAL 279
K+++ AKK+K ++ +LKQL+TA +R + F KLDL KWSARR ++SRK SFT LA++D+ LRK++LLP +VSRL++ PEEKS+PR KR+E+L
Sbjct: 851 KKKSSTAKKSKMRKGYLKQLQTAWDRDVSFGKLDLPRKWSARRAIHSRKVSFTVLADIDDLLRKVRLLPPYVSRLKVAPEEKSIPRIKRQESL 943
BLAST of mRNA_E_fasciculatus_S2_contig7082.15250.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q2_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.110e-12 Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 1
Query: 40 RNHLKQLKTAEERVLMFAKLDLRAKWSARRKVYSRKDSFTGLAEVDEHLRKLQLLPHFVSRLELTPEEKSLPRKKRREALDAKCERGVVVNATELIDLMSSIVKYPRANYFELVCALSFMSGRGLPEILGAAEF 441
R L Q K A R F +L L+ K ++ + R +S++G++ VDE + L LLP + +L L+ E+ KK EAL+ K + ++A+ LID SI+ PRAN F++ CA+ +SGR + E+ AEF
Sbjct: 596 RTSLLQAKAALAR---FHELPLKDKLKVQKSI--RWNSYSGVSSVDELIAALPLLPDHIRKLALSRNERDTLAKKATEALEKKSVNSMQIDASALIDKCVSILSDPRANSFDVACAIGLVSGRRMVEVFKTAEF 724
BLAST of mRNA_E_fasciculatus_S2_contig7082.15250.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWM0_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 1.830e-5 Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1
Query: 334 MSSIVKYPRANYFELVCALSFMSGRGLPEILGAAEFS 444
M +IV+YPRA FELVCAL+FMSGR L EIL AEF+
Sbjct: 244 MIAIVEYPRAKPFELVCALAFMSGRSLAEILRTAEFA 280 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7082.15250.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7082.15250.1 >prot_E_fasciculatus_S2_contig7082.15250.1 ID=prot_E_fasciculatus_S2_contig7082.15250.1|Name=mRNA_E_fasciculatus_S2_contig7082.15250.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=144bp MVAKKTKGQRNHLKQLKTAEERVLMFAKLDLRAKWSARRKVYSRKDSFTGback to top mRNA from alignment at E_fasciculatus_S2_contig7082:1740..2183+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7082.15250.1 ID=mRNA_E_fasciculatus_S2_contig7082.15250.1|Name=mRNA_E_fasciculatus_S2_contig7082.15250.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=444bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7082:1740..2183+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7082:1740..2183+ >mRNA_E_fasciculatus_S2_contig7082.15250.1 ID=mRNA_E_fasciculatus_S2_contig7082.15250.1|Name=mRNA_E_fasciculatus_S2_contig7082.15250.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7082:1740..2183+ (Ectocarpus fasciculatus EfasUO2)back to top |