mRNA_E_fasciculatus_S2_contig7072.15240.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7072.15240.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU07_9PHAE) HSP 1 Score: 502 bits (1292), Expect = 2.280e-175 Identity = 268/331 (80.97%), Postives = 283/331 (85.50%), Query Frame = 1
Query: 1 IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRRERPACFDDATGTSTAATGETGGGGERALRGQSRGMRPDRDTGFGQNVGRGGDNVGIGGGGVAWFVGGGEAGASGXXXXXXKASPFTASPPPLPPSPCTCGSRSTKSIPDIRGRGGGSS-NCGCDFPGNSILTDNRMWLAHFERCTRLWQILYYAGCSRKHACFCTNPGLERLHLCGLITEAEIPLLREFPGPVAHRHMPVFQWMVALYLRGLEEGRFVQPVSLTTRIMEQFVGLRDKSGDIGDMVGGRTRTPLAHAVQL-VGVFLLLAPFTLLSERSVGF 987
IWKIHMTLTTFILTFFVSQSYAMWRSVY TTRHVQGKLYNLLMLTTTHLRRERPA FDDATGTST+ATGETGGGGER+LRG+ R MRPD D FG+NVGRG D+V IGGG AWFVG XXXXXXKASP ASPP PPSPCTCG R T+ IPD GGGSS CGC+FPG S+L D R+WLAHFER TRLWQILYYAGCSRKHACFCT+PGLERLHLCGLITEAEIPLLR+FPGPVAHRHMPVFQWMVAL+L GLEEGRF+QPVSLTTR+MEQFVGLRDKSG IGDMVGGRT+ AHAVQL V VFLLL PF L SE VGF
Sbjct: 89 IWKIHMTLTTFILTFFVSQSYAMWRSVYMTTRHVQGKLYNLLMLTTTHLRRERPAYFDDATGTSTSATGETGGGGERSLRGEGRSMRPDSDMAFGRNVGRGRDDVRIGGGDAAWFVG--XXXXXXXXXXXXKASPLVASPPLPPPSPCTCGGRGTERIPDTSSGGGGSSCTCGCEFPGKSVLLDTRLWLAHFERYTRLWQILYYAGCSRKHACFCTDPGLERLHLCGLITEAEIPLLRDFPGPVAHRHMPVFQWMVALFLGGLEEGRFLQPVSLTTRMMEQFVGLRDKSGGIGDMVGGRTKLAYAHAVQLLVDVFLLLTPFALFSE--VGF 415
BLAST of mRNA_E_fasciculatus_S2_contig7072.15240.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV7_ECTSI) HSP 1 Score: 496 bits (1277), Expect = 1.670e-172 Identity = 266/330 (80.61%), Postives = 279/330 (84.55%), Query Frame = 1
Query: 1 IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRRERPACFDDATGTSTAATGETGGGGERALRGQSRGMRPDRDTGFGQNVGRGGDNVGIGGGGVAWFVGGGEAGASGXXXXXXKASPFTASPPPLPPSPCTCGSRSTKSIPDIRGRGGGSSNCGCDFPGNSILTDNRMWLAHFERCTRLWQILYYAGCSRKHACFCTNPGLERLHLCGLITEAEIPLLREFPGPVAHRHMPVFQWMVALYLRGLEEGRFVQPVSLTTRIMEQFVGLRDKSGDIGDMVGGRTRTPLAHAVQL-VGVFLLLAPFTLLSERSVGF 987
IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRRERPACFDDATGTSTAA GE+GGGGER LRGQSR +R DRDT G NVGRGGD+ GIGGG AWFVG XXXXXX P A SPCTCGSR T+SIPD G GGGSSNCG DFPG S+L D+R+WLAHFER TRLW ILYYAGCSRKHACFCT+PGLERLHLCGLITEAEIPLL++FPGPVAHRHMPVFQWMVALYL GLEEGRF+QPVSLTTR+MEQFVGLRDKSG IGDMVGGRT+ AHAVQL V VFLLL PF L SE VGF
Sbjct: 88 IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRRERPACFDDATGTSTAAMGESGGGGERVLRGQSRSVRLDRDTDSGGNVGRGGDDAGIGGGDAAWFVG--XXXXXXXXXXXXXXXPLAAXXXXXXXSPCTCGSRGTESIPDASGGGGGSSNCGRDFPGKSVLWDSRIWLAHFERYTRLWHILYYAGCSRKHACFCTDPGLERLHLCGLITEAEIPLLKDFPGPVAHRHMPVFQWMVALYLGGLEEGRFLQPVSLTTRMMEQFVGLRDKSGGIGDMVGGRTKLAYAHAVQLLVDVFLLLTPFALFSE--VGF 413
BLAST of mRNA_E_fasciculatus_S2_contig7072.15240.1 vs.
Match: Hypothetical (protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N9R6_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 2.870e-6 Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 1 IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRRE 156
+WK MTLTTFILTFF++QSY++WR VY +R VQG+ + ML TH R+
Sbjct: 197 VWKYLMTLTTFILTFFLNQSYSLWRQVYNISRSVQGRTNDFGMLLATHAVRD 248
BLAST of mRNA_E_fasciculatus_S2_contig7072.15240.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y7P8_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 6.610e-6 Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1
Query: 1 IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRR 153
+WK +TLTTFILTFF++QSY MWR VY +R VQG+ + +L TH R
Sbjct: 176 VWKYILTLTTFILTFFLNQSYTMWRQVYNLSRSVQGRTNDFGLLAATHAAR 226
BLAST of mRNA_E_fasciculatus_S2_contig7072.15240.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KLD0_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 1.080e-5 Identity = 23/52 (44.23%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 1 IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRRE 156
+W M++TTFILTFF+SQ+Y +WR++Y TTR +QG++ ++ +L + + R+
Sbjct: 14 LWHYLMSITTFILTFFLSQAYTLWRNMYDTTRKIQGRINDIGLLVASTVERD 65
BLAST of mRNA_E_fasciculatus_S2_contig7072.15240.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VYW5_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.950e-5 Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 1 IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRRE 156
+WK +TLTTFILTFF++QSY +WR VY +R VQG+ + +L TH R+
Sbjct: 141 VWKYILTLTTFILTFFLNQSYNLWRQVYNLSRSVQGRTNDFGLLLATHAARD 192
BLAST of mRNA_E_fasciculatus_S2_contig7072.15240.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ESH1_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 2.880e-5 Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 1 IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRRERPACFD 174
+W+ +TL TFIL FF SQ+Y+ WRSVY TTR +QG++ ++ ++ TT+ R D
Sbjct: 160 LWEYQLTLCTFILAFFTSQAYSYWRSVYFTTRAIQGRINDICLIITTNAERVPSEAID 217
BLAST of mRNA_E_fasciculatus_S2_contig7072.15240.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AN53_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 3.190e-5 Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 1 IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRRE 156
IW I LTTF+LTFFV+QS+ W+S+Y +R VQGKL M+ T++ RE
Sbjct: 43 IWDIQKGLTTFVLTFFVNQSFTFWKSIYGLSREVQGKLNGFNMMLATNVYRE 94
BLAST of mRNA_E_fasciculatus_S2_contig7072.15240.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6A7_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 6.350e-5 Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 1 IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRRE 156
IWK M+LTTF+LTFFV Q+Y WR+V+ R +QG++ ++ ML TH R+
Sbjct: 156 IWKTLMSLTTFLLTFFVGQAYTFWRTVHDQGRGIQGRMNDIHMLMATHAARQ 207
BLAST of mRNA_E_fasciculatus_S2_contig7072.15240.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R5J2_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 7.380e-5 Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 1 IWKIHMTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTT 138
+W+ +TL TFILTFF SQSY+ WR+VY TTR +QG++ ++ +L T
Sbjct: 203 LWEYQLTLCTFILTFFTSQSYSYWRTVYFTTRAIQGRINDICLLIT 248 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7072.15240.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7072.15240.1 >prot_E_fasciculatus_S2_contig7072.15240.1 ID=prot_E_fasciculatus_S2_contig7072.15240.1|Name=mRNA_E_fasciculatus_S2_contig7072.15240.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=324bp MTLTTFILTFFVSQSYAMWRSVYKTTRHVQGKLYNLLMLTTTHLRRERPAback to top mRNA from alignment at E_fasciculatus_S2_contig7072:3520..7346- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7072.15240.1 ID=mRNA_E_fasciculatus_S2_contig7072.15240.1|Name=mRNA_E_fasciculatus_S2_contig7072.15240.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3827bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7072:3520..7346- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7072:3520..7346- >mRNA_E_fasciculatus_S2_contig7072.15240.1 ID=mRNA_E_fasciculatus_S2_contig7072.15240.1|Name=mRNA_E_fasciculatus_S2_contig7072.15240.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=972bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7072:3520..7346- (Ectocarpus fasciculatus EfasUO2)back to top |