mRNA_E_fasciculatus_S2_contig707.15235.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig707.15235.1
Unique NamemRNA_E_fasciculatus_S2_contig707.15235.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig707.15235.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M3_ECTSI)

HSP 1 Score: 399 bits (1025), Expect = 1.280e-131
Identity = 207/249 (83.13%), Postives = 220/249 (88.35%), Query Frame = 1 
Query:  100 KGAPVAKATEIVDNSMATAVSTPSETARKRKCEQDDDRPTVQQKAKKRXXXTGSKRASSKKAKPVKKATPVQNGVQEGRLLEGSTAAGFEGTPKINPHRARILVAKQALAAIKEGTRIYIKSGEGNGGDTWWDSGIIQKIHERGKPYEVEWQKMNNKGEEVDTDVERRIMLPVTYSLAGVAAEAIKGVELGTEAAAFAMKNVLALARIGSWCISHPEEPWGMLDPFGEDSTPIPVPDVTRPSVELSETS 846
            +G  VAK  E VD+S   AVS PSET R RKCEQD+DRPTVQQKAKKR   TGSKRASSKKAKPVKK T VQ+GVQEG LLE ST  G +GT KINPHRA+ILV KQALAAIKEGTRI+IKSGEGNGGDTWWDSGI+QKIHERGKPYEVEWQKMNN+GEEVDTDVERRI+LPVTYSLAGVAAEAIKGVELGTEAAA  M+NVLA AR+GSWCISHPEEPWGMLDPFGEDSTP PV +VTRP VELSETS
Sbjct:    2 QGVSVAKEAEPVDSSATIAVSAPSETVRNRKCEQDEDRPTVQQKAKKRKIKTGSKRASSKKAKPVKKETTVQHGVQEGELLEESTTVGLKGTAKINPHRAKILVGKQALAAIKEGTRIFIKSGEGNGGDTWWDSGIVQKIHERGKPYEVEWQKMNNRGEEVDTDVERRIILPVTYSLAGVAAEAIKGVELGTEAAASVMQNVLAKARLGSWCISHPEEPWGMLDPFGEDSTPNPVSEVTRPPVELSETS 250
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig707.15235.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.280e-13183.13protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig707contigE_fasciculatus_S2_contig707:19084..25297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2248
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001670.1
Cds size852
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig707.15235.1prot_E_fasciculatus_S2_contig707.15235.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig707 19084..23901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842367.2666285-CDS-E_fasciculatus_S2_contig707:19083..191171696842367.2666285-CDS-E_fasciculatus_S2_contig707:19083..19117Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig707 19084..19117 +
1696842367.2783449-CDS-E_fasciculatus_S2_contig707:19499..195671696842367.2783449-CDS-E_fasciculatus_S2_contig707:19499..19567Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig707 19500..19567 +
1696842367.2890086-CDS-E_fasciculatus_S2_contig707:20900..212461696842367.2890086-CDS-E_fasciculatus_S2_contig707:20900..21246Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig707 20901..21246 +
1696842367.2989602-CDS-E_fasciculatus_S2_contig707:22088..221561696842367.2989602-CDS-E_fasciculatus_S2_contig707:22088..22156Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig707 22089..22156 +
1696842367.3092892-CDS-E_fasciculatus_S2_contig707:23030..230931696842367.3092892-CDS-E_fasciculatus_S2_contig707:23030..23093Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig707 23031..23093 +
1696842367.3218765-CDS-E_fasciculatus_S2_contig707:23628..239011696842367.3218765-CDS-E_fasciculatus_S2_contig707:23628..23901Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig707 23629..23901 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842367.3338447-UTR-E_fasciculatus_S2_contig707:23901..252971696842367.3338447-UTR-E_fasciculatus_S2_contig707:23901..25297Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig707 23902..25297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig707.15235.1

>prot_E_fasciculatus_S2_contig707.15235.1 ID=prot_E_fasciculatus_S2_contig707.15235.1|Name=mRNA_E_fasciculatus_S2_contig707.15235.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=284bp
MGLTTSSEAIGRHMNQVGADATEDQADPHLPPSKGAPVAKATEIVDNSMA
TAVSTPSETARKRKCEQDDDRPTVQQKAKKRKKKTGSKRASSKKAKPVKK
ATPVQNGVQEGRLLEGSTAAGFEGTPKINPHRARILVAKQALAAIKEGTR
IYIKSGEGNGGDTWWDSGIIQKIHERGKPYEVEWQKMNNKGEEVDTDVER
RIMLPVTYSLAGVAAEAIKGVELGTEAAAFAMKNVLALARIGSWCISHPE
EPWGMLDPFGEDSTPIPVPDVTRPSVELSETSC*
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mRNA from alignment at E_fasciculatus_S2_contig707:19084..25297+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig707.15235.1 ID=mRNA_E_fasciculatus_S2_contig707.15235.1|Name=mRNA_E_fasciculatus_S2_contig707.15235.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6214bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig707:19084..25297+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGCTCACAACATCGTCTGAGGCTATTGGGCGTAAGATCACGATAGC
GTTAGTGGGTCGGTTTGTTATTGTACAGTTTGGTTGTCCCTCGGCGCTCA
AGGTCTCGAATTCAAAGTAAAATGGATGTTTTGTACACGCGGTCTCCGAG
GATGCGATGTTGTTGCGGCTGCCGTTGGCAAACTCGCTGGTGTGGGTGTG
GTGCGTAGTCTGTGCGTAGACCAAGGCTGGAATCCCGCCCCTGAGTGTTG
CCCATGCGCTGCTAGTTGTTCGTTTCACGGATACGTTATCGCTGTTTCAC
TCCTACTGCTGCATGGCGTGGCTCTAGCGTCCATCTCCTCGCCCCTGTAT
GTTGTTTGTGTGTCCATCTCCTCGCCCCTGCTGTCTGTGTGTTGTTTGTG
TATGTATGTACCTCAGGCCATATGAACCAGGTCGGCGCAGACGCAACCGA
GGACCAAGCGGACCCTCACTTGCCGCCATCGAAGGTGAGGACATGCTTCA
TGATAGCAGCGTGATAGTACTGGCGTGCAGCCTTGACCTTTGTGCTCTTT
GTACTGTGTAGTTTCAACAATTTTCTCCGTTTCCGGACAACCCGTCCGGA
ATAATAAACAGCAGCACTTGTCGACTAGACTAGACTGTTGACCAGAAAAA
AACGGTCCAGCTGCTGTGTGCTGGCAAATCGGTTCATAATCAAAATACCA
TTATGCTTGGCGGCCAAACAATCAAACGATCTCCCGCTTCAGAACGTGTT
GATGTTCGAAGGCAAGGTAGAGAAAATTATGGAGCAGCGACGTGCGCGTC
GGCACGCCCAGATCTGTTGCTGGCACCGTGCATTAGGAGACTGCAGCTGC
GGCTCGATTTGCCCACAAACCTGGGTCGGTCCATACGACTACTCGCCGTC
ACAGACCCAATCTCCCGAACTGCGGGTGCACAGCAGAACCCCACATGATG
GTTAGCCGACGTGGACGACCAGCGGTTTGGGGCATCGGGTCTGTGATGGC
GCGTACAGCAGGATCATGTGTTATACCGATCACATTTGGACCAAGGTTTG
GGGACTTTCGGCCCGCGGCTTCCGCCTTCGATAGCATAGCGACAGATCTG
GGCGTTCCAATGCGCATGTCGCTGCTCCGTGATGTTCTTAATCGATGTAG
CTCCGAAATGCAACACGTTGAACGCAGATGAATTGTTGAAGCGCCTGACT
ACCGTTGTCGCGTGCGTTGTGTTGAATATTGAGTTTCGGACATATGTTTT
CTTGATGGGGAGACAAGTGTGTGGAGCGAGACTAGGTAATATGCTGGAAT
GGACAAGGCCCGATTCAGATGTGTCCAGTACCTTTTCAAAATCGACAAAA
GCACATGAAATGGCCTTAGGCCCAGTATTGGCGCTGTTCGATAATCTAAT
TAAATTTGTTTATACTCGCTATTGTTTATCTCGGGAAAAAAGGAGAAAAG
ATGCGCAGATCATGTAGCGGGGTCAGGAAGAGCGGTCGGGAGAGCATTGG
GATTGGGACAACGCATCCATTCCAAAAAGCAATATTATCTTAATTACCTC
CACAGTACCTCTCAGACCGACGGTTCCGGGCTCAGATTCGATGTGTTGAG
AGCCGAACTGTCTTTGCAATTTACTCCCCACGGTGCAATCTGAGGCCCCA
CGGAACGAAACGTTGAATCATACCCTTGCAAAGAATGTATATGACGCACT
CCAAATCATGTCACCGTCAATAGGCTGCTCACTATTGGCGTTCTTCCTGA
TGGCAGAGTGTTCTACGTCGGGTTACATTATTCTCAGATCTTGAAGGCCC
GTGTTTCTGTAATTCAGGGGGCACCAGTGGCAAAGGCAACCGAAATTGTT
GATAACAGCATGGCTACCGCAGTGTCTACACCATCGGAAACTGCCCGAAA
GCGAAAATGCGAACAAGACGACGACCGGCCGACTGTGCAGCAGAAGGCAA
AGAAGCGGAAAAAGAAGACCGGATCCAAACGTGCCTCATCAAAGAAGGCG
AAGCCCGTCAAGAAGGCGACACCCGTCCAAAACGGTGTGCAGGAAGGGAG
GCTGCTGGAGGGGTCGACGGCTGCGGGATTTGAGGGGACCCCCAAGATTA
ACCCTCACAGGGCCAGGATCCTGGTCGCCAAGCAAGCCCTGGCCGCCATA
AAGGAGGGAACAAGTGAGATGTACATGGGAACGAGCTGTTTTTTTGGCCG
GTGGTCATCTGCTGCTCTGAATCTAAAGCATGAACGCGAGGCGGTCAGGT
TAAGACGTGGCACTCCGCTGATTTTAGGGGGAATGCGTTTGTTGAGAGGT
TCGCGACCATCGAACCAATATGTGAGAGCTGATATGCAACCGAGACTGAG
TTGGCCAATAAGCCCTGGCCCCTGGTCGAGGGACTACGAAACATGAGCTC
TTCCGCAGTTGATGGAGCGTGAGACTATGTCATGAAGGATCTAAGAATTG
GCGCGCTGCTGCATCGCATTGGCCATCCAAGCTAACCTACGAAGGACCAC
GATTCCAAGCCACGAGCCGCCTGTAGAAGAATGTGACAGCGAACTATCAT
CAGCGTGTCGTCGAAAATACCATTAAGCTCAGGGACTGAGTGGGCAGCAG
GGCATCATGGCAGGCCCCATCATGCCTCGCGATTCGATGGCATCCATTTT
CTTCTCTGGCAGACGCGAGCCTTGTGTTTTACCGGTCCACGCAGGCATGG
ACCTTCCTGGTCACGTGCAAGACTCGCATTGCTTAGTGGTGTCTTTCGCC
GCATTCCGGCTGTCAATCCTGCTGGTCACAAACGGAATCGGCACGAAAAG
GGCCAATGTTTCCGATGAGAAAAGGCGGAACTCGACAGTTGCATGTGGTG
AACAACGCGCCATGCTTCCCGGCGGGTTGCCTGCTTAAGCTCGCCGATGT
GCGAGTTTTCGTGTCGCCCTCTACGCATACACCCCGTTGTTCCTTCTTTC
GCGTTGTTCACACATCTCGAACTCCTGTATGTCTATCCCCGGAACCTCTC
GATAGGAATATATATCAAGAGCGGAGAAGGCAACGGCGGAGACACATGGT
GGGACAGCGGAATCATCCAGAAGGTGTGGGTGGTCTCCATTCAGGAACGG
GGGCTGGCAATGACCTACATGGTTGGGTCGGTATGAATGTTCTGGTTATC
TTTCAAGCTTCATGCGCCGTGCGGATCGCACCACAGCCAGCTTGGTGATA
GTTTCCTACTTCTACAATGCTAGAGTACCTCGCCAGCTCTCTCGACCACA
CACCCGTCATTGTGTGGAGGATTGTGCGCGTTTCAACATGTTTCAACAAC
ACCGCAACATGGGATCTGTTCAGAACCGTTGCCCGTGTGGCGTAAGGTCC
TCTAGCATGTTGAACCGCCGTGGTTTGCGCTCTACGGCCACAGCAGCAAT
CTCGGCACTGCCGCCGTGTGGTCTCTCCGTTTAGATATATCTTTGAGCAC
GTGTGAGCCTGGTGGGACAAGAACTAAGCTGTTTGCGCAAACGAACACAT
GCTCCGAAGCGTTTCTACACGGCAGACGTATCCCCCACAAGTTTTCATCG
CATTTCCATTGCGAGGACAAGCACCCATTCCCAGGGTTTCTCACCTACAT
AGCATTGTCAGCTTGCCCATGAAGTGAGGCCTCAGATGACGTGCCTCTGC
TTCTTACGTTTTTTCGAATTGTTGTGCTTCTGTGTGTTGACGGCGAAGTC
CTCGTTAGGGATGGAAGCCGCCGCTCCATAACTTCGATTAACGCCATCTG
CTCGACGACGCGAACGATTGGAGCATTCCAAAAGATGCTCTCAGCCTTCA
TTTGGAACGATCCTTCGTTTGAAGGCTCAAATGTTGTTGAGTGTGTCAAC
AGAACGTTTGTCGAACAGCAGTGCTACACCCCGATCGTGACGTGGTGGGC
CGTCTTTGTGACGCTTTGATAACTCTCGGCATTCGAAACCTCACCAGATC
CACGAGCGCGGCAAACCGTACGAGGTCGAGTGGCAGAAGATGAACAACAA
GGGCGAGGAGGTTTGTTTTGAGTTTGCAACAGTATGTGACAGTAACGTTC
GAAAGTATTCCGCGTAGGGTATACGAACGCGTGACCTGTTTTCTTTGTTC
TCATGTTTTCATCACATTTGTGACTTGAGCAGCCATGCCGAATCTTGGAA
GCACAAGCGTGTTGATAACGTCGGCGTTAGCTTCTTCCGTATCGTCGACA
CTTCTGGATTGCGCCAACTTTGATGACCTGTGTCTTTGACGACCTGTATG
ACGACCAAACCGAACGTTGAAGCCGACAGCCACCGTGAGGAGTGGGGCGA
TGCCTAGACACCCAGGTGGCGATTCATCCCCTCTGTATATCCATCGCATT
CATTCGAATACACTCGTTCCCCGTGGAAACGACACCTCGTGACTCCTTGC
GAACATAGAGGCGGGGTGGGCGGTGCGTCATTCACTTTAGTGACCCGTGG
AACGACCGGTCAGTCGACATCGTTTGCCAAGCCCCAGGCCCAGGAATTCT
CCAGCAAGAGTTCAAGATTCCCTCAACGAACTCTTGTAACCACAGGTCGA
CACTGACGTCGAGAGGCGTATCATGCTGCCCGTAACGTACAGCCTCGCCG
GAGTGGCGGCCGAGGCGATCAAAGGGGTCGAGCTGGGGACCGAGGCCGCC
GCCTTCGCAATGAAGAACGTCCTCGCTTTGGCTCGCATCGGGTCCTGGTG
CATCAGCCACCCCGAGGAACCGTGGGGCATGCTTGATCCCTTCGGGGAGG
ACTCTACGCCGATCCCTGTTCCAGACGTCACAAGGCCATCCGTCGAATTG
AGTGAAACGTCCTGTTAAGATGACCTAGTCTGAATTCCTTGGGTTGATAG
TATCGACGGAAGAGGTTGTTCTATGAGGTGAACGTAGCTGATCTTTCGAG
GAAACCTTCATGCGCTGGGATCCCTCACTCGCAAAACCAGGGTCATGACG
AACGGGATTGCATTGGTACAGGAGGTCGAAGTGACGAGATTTTGTTGGAT
GAAGCCTCTCATCCGGTGAAAAAGTCCTTCGTACTGTGCACACTGTAGGG
TTTCTCCCGGCGGTTTCCGGGTTAAGCCATAGGTTTTCCCGATCCTATCC
TCTAGAAAACGCCCCAAGGGGGTTCTACAGCGGGTAACGTTTAGTGTAGA
GCGCGAATGTTGGACCTTGAGAGCAAGGCTACAATCGACGTGTAACGCTC
TTCATACCTGCCTGTCTGGTAGTACTCGTGCGAAGAGAGCTGCCATCCGT
ATCATAGTCTTTTTTTTTTCTCTCAGGGAGGTGGCGATGAAAGTAGGTTG
AGGACAAGCTTCATACGCAGCGTTTTGCCGATCTTAGGAGGTTGCGCGGA
AATCTAGAGGACTACTTTGTATGTAGTTTTTTTTTTGTGGTATGCTACCA
TCAATAGGGGTATCGGCAATGGGAAAGGGAGACGACGTTTTGATCTTTGG
CCAATGACGGCTCGGGCACAGTCGTCCATTCTCGAGGCGTGAATCCAACT
TTACACTGTAAGAAAATACTCTTGCTTTGGTGTATCGATGTGTGATTGGC
CGCTCGGGCACCAGCCTGCCCGTACGGTGCTCTGAGGCACACGTCATCGC
CTAATGGTTGTCTTCAAGCAATGGCACACTCGTCTCGGTGGAGTATGTCT
ACGCTTGCTCGTAGTCGTGTAATGCTTGAAGAACACCAGAAATGTGGTAT
ATCGGACGCCCGGGTGGCGGGTTAACAGTTAGCTCAGGCAGCAGTGAGTT
CGTCTACGCATAAATTATTTGTCTCGTAGTCTCCACTCCGTCTGTTGATC
CAAATGGTTAGACTAAGGTGTGAACCTGATGAAAACTCCGCATCAAGTAG
TGTTGAGTTGACAGCACAAAGAGGGACGGGGTTGCTGGACGTTCTCACCA
AATCTATTTGGAGAGCACCCACCGCAAAGTGAGCAAGGATCCGGTGGAGA
ACCACCCTATCGTGGTTGTTGTTATCCTCACACTAAAAGTAGGTCAGGTC
GCTGCAGTGTGTGTGTGTTTTCGTCCTCTATTTATTGATAGATAACACCG
GGGCTATTTTTGAAATATTGATTATCGTGCCCACGTTCCTCCTGCGGCGC
GTGCTGAATTAGTTGGTATCTTGAGAAGGGTCCAGCCGTCCCTTCCCCTC
GTCGACGGTACTAACAGCGTGTAGCACCGGGCAACCAACTATTATGTAAA
TAATGTATGTACTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig707:19084..25297+

>mRNA_E_fasciculatus_S2_contig707.15235.1 ID=mRNA_E_fasciculatus_S2_contig707.15235.1|Name=mRNA_E_fasciculatus_S2_contig707.15235.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=852bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig707:19084..25297+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGCTCACAACATCGTCTGAGGCTATTGGGCGCCATATGAACCAGGT
CGGCGCAGACGCAACCGAGGACCAAGCGGACCCTCACTTGCCGCCATCGA
AGGGGGCACCAGTGGCAAAGGCAACCGAAATTGTTGATAACAGCATGGCT
ACCGCAGTGTCTACACCATCGGAAACTGCCCGAAAGCGAAAATGCGAACA
AGACGACGACCGGCCGACTGTGCAGCAGAAGGCAAAGAAGCGGAAAAAGA
AGACCGGATCCAAACGTGCCTCATCAAAGAAGGCGAAGCCCGTCAAGAAG
GCGACACCCGTCCAAAACGGTGTGCAGGAAGGGAGGCTGCTGGAGGGGTC
GACGGCTGCGGGATTTGAGGGGACCCCCAAGATTAACCCTCACAGGGCCA
GGATCCTGGTCGCCAAGCAAGCCCTGGCCGCCATAAAGGAGGGAACAAGA
ATATATATCAAGAGCGGAGAAGGCAACGGCGGAGACACATGGTGGGACAG
CGGAATCATCCAGAAGATCCACGAGCGCGGCAAACCGTACGAGGTCGAGT
GGCAGAAGATGAACAACAAGGGCGAGGAGGTCGACACTGACGTCGAGAGG
CGTATCATGCTGCCCGTAACGTACAGCCTCGCCGGAGTGGCGGCCGAGGC
GATCAAAGGGGTCGAGCTGGGGACCGAGGCCGCCGCCTTCGCAATGAAGA
ACGTCCTCGCTTTGGCTCGCATCGGGTCCTGGTGCATCAGCCACCCCGAG
GAACCGTGGGGCATGCTTGATCCCTTCGGGGAGGACTCTACGCCGATCCC
TGTTCCAGACGTCACAAGGCCATCCGTCGAATTGAGTGAAACGTCCTGTT
AA
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