mRNA_E_fasciculatus_S2_contig7064.15230.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7064.15230.1 vs.
Match: Dihydrodipicolinate (synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB5_ECTSI) HSP 1 Score: 280 bits (717), Expect = 7.520e-94 Identity = 143/165 (86.67%), Postives = 153/165 (92.73%), Query Frame = 1
Query: 1 GRLALRGPVFDLLTPFTGEGEVDFTAFGDYLQFLSKAGVPTILCNGEAGEFASLTTDERKLLVEFARDSFSGTVLNHVSASALPDVTRLISHSSGKADGGSRTVADAVLVMPPCSSFGGSAGGRVAERGGEEERGTEAFLRKALGGCQLPVFLYSAAGNPISPGL 495
GRLALRGPVFD+LTPFTGEGEVDFTAFGDYLQFLS+AGVPTILCNGEAGEFASLTT ERKL+V+FAR +FSGTVLNHVSASALPDVT+LISHSSGK+ GGSRT+ADAVLVMPPCSSFGG GGR ERGG+E RGTEAFLRKALGGCQLPVFLYSAAG + GL
Sbjct: 15 GRLALRGPVFDVLTPFTGEGEVDFTAFGDYLQFLSEAGVPTILCNGEAGEFASLTTGERKLIVDFARKTFSGTVLNHVSASALPDVTQLISHSSGKSGGGSRTLADAVLVMPPCSSFGGYPGGRETERGGDE-RGTEAFLRKALGGCQLPVFLYSAAGAQVGWGL 178
BLAST of mRNA_E_fasciculatus_S2_contig7064.15230.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPJ8_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.080e-33 Identity = 75/174 (43.10%), Postives = 100/174 (57.47%), Query Frame = 1
Query: 34 LLTPFTGEGEVDFTAFGDYLQFLSKAGVPTILCNGEAGEFASLTTDERKLLVEFARDSFSGTVLNHVSASALPDVTRLISHSSGKAD----GGSRTVADAVLVMPPCSSFGGSAGGRVAERGGEEERGTEAFLRKALGGCQLPVFLYSAAGNPISPGLYARLCADFTTVSGILD 543
LLTPFT GE+DF + +LQFL AG+ +I+C AGE+ SLT +ER+ L+ F R FSG ++NHVSASAL DV +LI++S G A GG T ADA+L+ PP +F G+ E G EAFL +AL C LP + + + P + L DF + G D
Sbjct: 1 LLTPFTDFGEIDFGSLESHLQFLEAAGISSIICGDNAGEYPSLTLEERQRLLNFCRQRFSGQIINHVSASALYDVLQLIAYSGGLAGAGGLGGHSTRADAILLQPP-QAFAGA-----------NEEGIEAFLHEALSSCALPSIILNGP-TAVPPRVCEALSQDFPHMLGTFD 161
BLAST of mRNA_E_fasciculatus_S2_contig7064.15230.1 vs.
Match: dihydrodipicolinate (synthase family protein n=1 Tax=Nocardia abscessus TaxID=120957 RepID=UPI001894CAD9) HSP 1 Score: 115 bits (289), Expect = 4.910e-28 Identity = 74/188 (39.36%), Postives = 98/188 (52.13%), Query Frame = 1
Query: 13 LRGPVFDLLTPFTGEGEVDFTAFGDYLQFLSKAGVPTILCNGEAGEFASLTTDERKLLVEFARDSFSGTVLNHVSASALPDVTRLISHSSGKADGGSRTVADAVLVMPPCSSFGGSAGGRVAERGGEEERGTEAFLRKALGGCQLPVFLYSA---AGNPISPGLYARLCADFTTVSGILDGSGDATVS 567
L V +L PF G +D A DYLQ L+ AGV TIL NG +GEFA LT DER+ ++E R ++GTV+ HV A+A+ DV H+ ADAV V+ P F +A E G E F R+A+ G LP +Y+ GNP+SP + ARL +F + GI D D V+
Sbjct: 2 LDSAVVAVLAPFQRSGRIDLAALTDYLQLLASAGVGTILVNGTSGEFAGLTADERRSVIEHCRGEWAGTVIAHVGATAVADVRAAARHAQEH--------ADAVAVIAPY--FFAAA----------PESGVEQFFRQAMTGIALPWLVYNFPRHTGNPVSPAVVARLAGEFPQLVGIKDSGKDLAVA 169
BLAST of mRNA_E_fasciculatus_S2_contig7064.15230.1 vs.
Match: Dihydrodipicolinate (synthase family protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=UPI0019D8F219) HSP 1 Score: 115 bits (288), Expect = 6.750e-28 Identity = 64/184 (34.78%), Postives = 97/184 (52.72%), Query Frame = 1
Query: 13 LRGPVFDLLTPFTGEGEVDFTAFGDYLQFLSKAGVPTILCNGEAGEFASLTTDERKLLVEFARDSFSGTVLNHVSASALPDVTRLISHSSGKADGGSRTVADAVLVMPPCSSFGGSAGGRVAERGGEEERGTEAFLRKALGGCQLPVFLYSAAGNP---ISPGLYARLCADFTTVSGILDGSGD 555
+ GP+F ++TPF G++DF + G+YL FL + GV I+ NG GEFASLT +ER+ ++E+ R F G V+ H+SA A+ D L+ H+S ADA LV+PP +A G + F + LP++LY+ + + P L LC F+ + G+ D SG+
Sbjct: 4 IEGPIFAIVTPFDRSGKIDFGSLGEYLAFLKECGVQNIIVNGTMGEFASLTFEERRSVLEYCRSQFPGCVMAHISACAVKDCVMLLEHAS--------EYADAALVLPPYYYSNATAAG------------LQTFFESIIQRTTLPIYLYNFPAHTNIELKPELVTPLCKKFSRLRGVKDSSGN 167
BLAST of mRNA_E_fasciculatus_S2_contig7064.15230.1 vs.
Match: dihydrodipicolinate (synthase family protein n=1 Tax=Methylomarinum vadi TaxID=438855 RepID=UPI001F49025D) HSP 1 Score: 107 bits (268), Expect = 1.720e-24 Identity = 69/186 (37.10%), Postives = 97/186 (52.15%), Query Frame = 1
Query: 7 LALRGPVFDLLTPFTGEGEVDFTAFGDYLQFLSKAGVPTILCNGEAGEFASLTTDERKLLVEFARDSFSGTVLNHVSASALPDVTRLISHSSGKADGGSRTVADAVLVMPPCSSFGGSAGGRVAERGGEEERGTEAFLRKALGGCQLPVFLY---SAAGNPISPGLYARLCADFTTVSGILDGSGD 555
+ ++GP+ LLTPF G++D+ AF YL L GV T++ NG EFASLT DER+ ++EF R F+GT++N+VSA+ + DV LI + + AD +L++PP + SA E+ G F AL LP LY GN + L A L ++ GI D SGD
Sbjct: 74 IQVQGPIVTLLTPFDRNGDIDWQAFKRYLASLYSWGVGTVIANGTTAEFASLTIDERRQVIEFVRKHFAGTIINNVSATCVKDVRELIDETQDR--------ADLLLILPP---YYYSA---------REDNGLCRFFSDALSETPLPAMLYHFPQHTGNFVGVDLVAMLLDRGISIQGIKDSSGD 239
BLAST of mRNA_E_fasciculatus_S2_contig7064.15230.1 vs.
Match: Dihydrodipicolinate (synthase n=2 Tax=Nocardia brasiliensis TaxID=37326 RepID=K0F0F0_9NOCA) HSP 1 Score: 95.9 bits (237), Expect = 1.690e-20 Identity = 62/188 (32.98%), Postives = 89/188 (47.34%), Query Frame = 1
Query: 13 LRGPVFDLLTPFTGEGEVDFTAFGDYLQFLSKAGVPTILCNGEAGEFASLTTDERKLLVEFARDSFSGTVLNHVSASALPDVTRLISHSSGKADGGSRTVADAVLVMPPCSSFGGSAGGRVAERGGEEERGTEAFLRKALGGCQLPVFLYSA---AGNPISPGLYARLCADFTTVSGILDGSGDATVS 567
+ P+ + TPF +G +D A GDYL L+ AG+ TIL NG EFASLT+ ER+ +VE+AR ++G ++ HV + A+ + L H++ D R A + E G E + + L PV LY+ NP+SP L ARL + V GI D D V+
Sbjct: 2 ITSPIVAVTTPFQLDGRIDLPALGDYLDLLAAAGIRTILVNGTTAEFASLTSAERRRIVEYARGRWAGELIAHVGSPAIAEAEELADHAAQHCD---RLAAISPYFFADAP-----------------EAGVEHYFAQLLEATTHPVLLYNFPRHTQNPLSPALVARLAGRYPHVCGIKDSGMDLAVT 169
BLAST of mRNA_E_fasciculatus_S2_contig7064.15230.1 vs.
Match: 4-hydroxy-tetrahydrodipicolinate (synthase n=2 Tax=Candidatus Kentron sp. FW TaxID=2126338 RepID=A0A450SP52_9GAMM) HSP 1 Score: 86.7 bits (213), Expect = 5.090e-17 Identity = 54/151 (35.76%), Postives = 76/151 (50.33%), Query Frame = 1
Query: 13 LRGPVFDLLTPFTGEGEVDFTAFGDYLQFLSKAGVPTILCNGEAGEFASLTTDERKLLVEFARDSFSGTVLNHVSASALPDVTRLISHSSGKADGGSRTVADAVLVMPPCSSFGGSAGGRVAERGGEEERGTEAFLRKALGGCQLPVFLYS 465
+ GP+F +TPF + D AF +YL FL KAGV +IL NG GEF SLT +ER E A+ +F+G V++ +S+ + L S ADA+L++PP S GG V F + AL G Q P ++Y+
Sbjct: 7 INGPIFATVTPFNQDDNFDEMAFINYLAFLEKAGVKSILVNGTTGEFPSLTFEERVETCEIAKKNFNGNVISDISSCCYREANELARSSVD---------ADALLLLPPYYYDVRSEGGLVG------------FFKNALKGIQTPTYIYN 136
BLAST of mRNA_E_fasciculatus_S2_contig7064.15230.1 vs.
Match: PRK (domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1DNL0_9BACT) HSP 1 Score: 85.5 bits (210), Expect = 4.790e-16 Identity = 58/164 (35.37%), Postives = 81/164 (49.39%), Query Frame = 1
Query: 13 LRGPVFDLLTPFTGEGEVDFTAFGDYLQFLSKAGVPTILCNGEAGEFASLTTDERKLLVEFARDSFSGTVLNHVSASALPDVTRLISHSSGKADGGSRTVADAVLVMPPCSSFGGSAGGRVAERGGEEERGTEAFLRKALGGCQLPVFLYSA---AGNPISPGL 495
+ G + +LTPF GE+D F ++L+FL+KAGV +L NG GEF SL + ER+LL+ AR F G +L +L I + + DG AD VLV+PP G G V + +A LPV LY+ GNP++PG+
Sbjct: 244 ISGLILPVLTPFNASGEIDQKYFIEHLEFLAKAGVGRVLVNGTTGEFFSLDSGERRLLLRLARTYFPGVILFQAGTESLIRTKAEIRWA--EEDG-----ADGVLVLPPYYFAGAPESGLVR------------YFEEAAACSSLPVILYNFPKHTGNPLTPGI 388
BLAST of mRNA_E_fasciculatus_S2_contig7064.15230.1 vs.
Match: dihydrodipicolinate (synthase family protein n=1 Tax=Salinigranum salinum TaxID=1364937 RepID=UPI001260BD0D) HSP 1 Score: 74.3 bits (181), Expect = 1.590e-12 Identity = 65/182 (35.71%), Postives = 90/182 (49.45%), Query Frame = 1
Query: 22 PVFD-LLTPFTGEGEVDFTAFGDYLQFLSKAGVPTILCNGEAGEFASLTTDERKLLVEFARDSFSGTVLNHVSASALPDVTRLISHSSGKADGGSRTVADAVLVMPPCSSFGGSAGGRVAERGGEEERGTEAFLRKALGGCQLPVFLYSA---AGNPISPGLYARLCADFTTVSGILDGSGD 555
PV+ L+TPFT VD A ++ + + GV + G GEFASLT DE + +VE D+ +G+V+ V+ +++ V I + AD GS DAVL+ P +AGG TE+FLR AL LPV+LY+ G + A L AD V G+ D SGD
Sbjct: 5 PVYTPLVTPFTDADGVDADALASLVEAVERRGVDGVAPCGTTGEFASLTDDEYRQVVETTVDAATGSVVTGVADTSVAGVRSRIDLA---ADLGS----DAVLLTGPYFHTENAAGG------------TESFLRAALADVSLPVYLYNLPVYVGESLDVDTVATL-ADDGVVQGLKDSSGD 166
BLAST of mRNA_E_fasciculatus_S2_contig7064.15230.1 vs.
Match: Dihydrodipicolinate (synthase/N-acetylneuraminate lyase n=15 Tax=Enterobacterales TaxID=91347 RepID=J2KNW5_9GAMM) HSP 1 Score: 72.4 bits (176), Expect = 7.800e-12 Identity = 55/171 (32.16%), Postives = 82/171 (47.95%), Query Frame = 1
Query: 37 LTPFTGEGEVDFTAFGDYLQFLSKAGVPTILCNGEAGEFASLTTDERKLLVEFARDSFSGTVLNHVSASALPDVTRLISHSSGKADGGSRTVADAVLVMPPCSSFGGSAGGRVAERGGEEERGTEAF--LRKALGGCQLPVFLYSAAGNPISPGLYARLCADFTTVSGILD 543
+TPF + +D A G + LS++G+ T+L G GEFASLT ER LL+ AR T++ +VS++ +PD+ +L AD + DAV+V+PP G +++ F L K LGG + G ++P L A L A+ GI D
Sbjct: 15 VTPFDNKNNLDIEALGRHFSRLSQSGIDTLLLMGSIGEFASLTQQERLLLIHEARQLSPLTMVANVSSTCIPDMLQL-------ADAAWQNGFDAVMVLPPYYY------------GQTQKQLLNYFKTLDKQLGGKWFAYNFPARTGCDLTPALVAELAAELPNFIGIKD 166 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7064.15230.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7064.15230.1 >prot_E_fasciculatus_S2_contig7064.15230.1 ID=prot_E_fasciculatus_S2_contig7064.15230.1|Name=mRNA_E_fasciculatus_S2_contig7064.15230.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=189bp GRLALRGPVFDLLTPFTGEGEVDFTAFGDYLQFLSKAGVPTILCNGEAGEback to top mRNA from alignment at E_fasciculatus_S2_contig7064:1521..4483+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7064.15230.1 ID=mRNA_E_fasciculatus_S2_contig7064.15230.1|Name=mRNA_E_fasciculatus_S2_contig7064.15230.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2963bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7064:1521..4483+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7064:1521..4483+ >mRNA_E_fasciculatus_S2_contig7064.15230.1 ID=mRNA_E_fasciculatus_S2_contig7064.15230.1|Name=mRNA_E_fasciculatus_S2_contig7064.15230.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=567bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7064:1521..4483+ (Ectocarpus fasciculatus EfasUO2)back to top |