mRNA_E_fasciculatus_S2_contig7062.15229.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: VWFA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE) HSP 1 Score: 585 bits (1508), Expect = 2.460e-200 Identity = 273/301 (90.70%), Postives = 286/301 (95.02%), Query Frame = 3
Query: 3 SHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGILARRNLRAQSFEDWVLSFTDMAAHDWCTEYITEKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALLHAK 905
SHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDL VNVRLTAPLP++FPDRQLVTGL+V+SEGHSLVLEVTNPYSTD+ DGCP GSPTPCLANGGLSVTVDG+KNVG L+HP R E+LPGGI+VSADNLPVQCWQFGGHKIWARHYE ILARR LRAQSFEDWVLSFTDMAAHDWCTEYI+EKGLT VQS+HAIYQIVTPAVVVRLNVGIGHQDG+E DWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYD+DG VMAGDDAYRGTPEDYRVSGPLGMDFALLH K
Sbjct: 399 SHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLRVNVRLTAPLPDDFPDRQLVTGLSVISEGHSLVLEVTNPYSTDLNDGCPDGSPTPCLANGGLSVTVDGEKNVG---LIHPIRGEILPGGIEVSADNLPVQCWQFGGHKIWARHYEAILARRKLRAQSFEDWVLSFTDMAAHDWCTEYISEKGLTGVQSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALLHQK 696
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE) HSP 1 Score: 450 bits (1158), Expect = 1.700e-152 Identity = 216/300 (72.00%), Postives = 242/300 (80.67%), Query Frame = 3
Query: 12 CDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGIL--ARRNLRAQSFEDWVLSFTDMAAHDWCTEYITEKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALLHAK 905
C D + LLGQSIDWFG+DG WYS V+DPD+DL+VNVRLTAP PEEFPDRQLVTGL+V++ GHSLV+EVT PY TD GCP G+P PCLANGGLSV VDG+K DSPLLH R E LPGGIQVSA NLPVQCWQFGG KI ARHY + RR+L +++FE+WVLSF MAAHDWCTEYI K L+DVQSA AIYQI+TP VVVR NVGIGHQ G + DGR++PDLDVW+MDVGL GLSLENE LTGILGETARPV D+ G+ VM G+ AYRGTPEDYRVSG LG DFALL K
Sbjct: 54 CTDTYAV-LLGQSIDWFGIDGGWYSLVQDPDIDLNVNVRLTAPPPEEFPDRQLVTGLSVMAGGHSLVIEVTKPYDTDTAGGCPDGAPAPCLANGGLSVIVDGEKEADDSPLLHTIRDETLPGGIQVSAANLPVQCWQFGGDKISARHYANTIMEGRRHLLSETFEEWVLSFQHMAAHDWCTEYIAHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALLRQK 352
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Imm (upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI) HSP 1 Score: 351 bits (900), Expect = 3.890e-114 Identity = 174/299 (58.19%), Postives = 220/299 (73.58%), Query Frame = 3
Query: 18 DPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGILA-RRNLRA-QSFEDWVLSFT-DMAAHDWCTEYITEKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALLHAK 905
DPHM+GL GQ I+W GVDG WYS VKD DL +NVR+TAPLP+EFPDRQL+T LA++SEG+S+V+EV NPY T +T GCP G +PCLANGGL + VDG++ D L + V G + +SA NLPV+C QFGGH+IWAR Y+ IL RR LR +S E+W+L + +M A WC +YI E L D+Q+ HAI++I TP V VRLN G+ +Q E +WDGRVLPDL+ WQMDVG+ GL ++N AL+G+LGETARPVY ++G+ VM G DA+RGT EDYRVS LG+ FALL K
Sbjct: 15 DPHMRGLRGQRINWSGVDGGWYSLVKDDHADLSINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVENPY-TIVTGGCPEGV-SPCLANGGLRIIVDGQEV--DELLRFSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALLDEK 309
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE) HSP 1 Score: 351 bits (901), Expect = 7.390e-113 Identity = 173/302 (57.28%), Postives = 221/302 (73.18%), Query Frame = 3
Query: 9 ICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGIL-ARRNLRA-QSFEDWVLSFTD-MAAHDWCTEYITEKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALLHAK 905
+C DPHM+GL GQ IDW GVDG WYS +KD ++D+++NVRLTAPLP+EFPDRQL+T LAV+S+GHS+V+EV NPY T +T+GCP G +PCLANGGL + VD ++ D L V G + VS+ NLPV+C QFGG +IWAR Y+ ++ RR L +S E+W+L + MAA WC +YI E L D+QS HAI++I TP V VRLN G+ +Q E +WDGRVLPDL+ WQM VG+ GL ++N AL+G+LGETARPVYD++GQVVM G DA+RGT EDYRVS L + F LL K
Sbjct: 111 VCGDPHMQGLRGQRIDWSGVDGGWYSLIKDDNIDININVRLTAPLPDEFPDRQLMTSLAVLSKGHSVVIEVENPY-TVVTNGCPEGV-SPCLANGGLRIIVDSQQV--DELLRFSRHVPVADGAMTVSSSNLPVECQQFGGDRIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIAENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLLDEK 408
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE) HSP 1 Score: 313 bits (802), Expect = 1.220e-99 Identity = 158/300 (52.67%), Postives = 205/300 (68.33%), Query Frame = 3
Query: 6 HICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGIL-ARRNLRA-QSFEDWVLSFT-DMAAHDWCTEYITEKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALL 896
HI DPHM+GLLGQ ++W G DG WYS +KD + DLH+NVR+TAPLP+EFPDRQL+T LA++SEG+S+V+EV NPY+TD T GCP +PC ANGGL + VDG + E+L Q+ GG +IWAR Y+ IL RR LR +S E+W+L + +M A WC +YI E L D+Q+ HAI++I TP V VRLN G+ +Q E +WDGRVLPDL+ WQ+DVG+ GL ++ AL+G+ GETA PVYD++G+ VM G DA+RG EDYRVS LG+ FALL
Sbjct: 16 HIWGDPHMRGLLGQRVNWSGFDGGWYSLIKDDNADLHINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVKNPYTTD-TGGCPE-DVSPCHANGGLRIIVDGHEV-----------DELLRFSRQMP-----------GGKRIWARMYQDILEGRRQLRGGESLEEWILRYDQNMPARTWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFALL 291
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD0_9PHAE) HSP 1 Score: 241 bits (615), Expect = 1.490e-71 Identity = 138/307 (44.95%), Postives = 189/307 (61.56%), Query Frame = 3
Query: 9 ICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVS-EGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGG-IQVSADNLPVQCWQFGGHKIWARHYEGI---LARRNLRAQS-FEDWVLSFTDMAAHDWCTEYITEK---GLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGE-EADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALLH 899
+ D HM GLLGQ IDW+G D WY + + + VN R+TAP+P+EFP RQLV+G+++ S EG SLV+EV NP +T+ T+GC S PCLA G L + VDG ++ L P + VLPGG + VS+ NLP +C FGG +IWA + + RR+LR + F DWVL MAA WC + E+ GL+ VQS AI ++ T V VR++VG+ +QD +D + ++P+LD WQ D+ L E L G+LG+TAR V D DG+ + +G +A RG E RVSGPLG+DF +H
Sbjct: 7 VSGDSHMVGLLGQEIDWYGEDSGWYCLLVNS--EFQVNARVTAPMPDEFPTRQLVSGVSIRSAEGPSLVVEVKNPITTE-TEGCSSTS-APCLAEGALRILVDGDES---HALQSPVENLVLPGGDLVVSSANLPAECRPFGGDRIWAAQFAAMNDASGRRSLRGHTPFADWVLEADTMAAPGWCALFAREQRLSGLSSVQSNRAILRVETGGVTVRVDVGVNYQDSVLSSDGNAVLVPELDFWQTDIAFEELRPSGE-LGGMLGDTARYVIDDDGKPITSGMEALRGPVETCRVSGPLGVDFEQMH 305
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E8_ECTSI) HSP 1 Score: 197 bits (502), Expect = 2.800e-57 Identity = 89/117 (76.07%), Postives = 101/117 (86.32%), Query Frame = 3
Query: 9 ICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTR 359
ICDDPHMKGL GQ IDWFGVDG WY+F+KD D+DLHVNVRLTAPLPEEFP+RQLVTGL+V++ HSL+LEVTNPY TD+ GC G TPCLANGGLSVTV+G+K + DSPLLHP R
Sbjct: 7 ICDDPHMKGLRGQHIDWFGVDGGWYAFIKDDDIDLHVNVRLTAPLPEEFPERQLVTGLSVIAGEHSLILEVTNPYDTDINGGCLDGMSTPCLANGGLSVTVNGEKQMVDSPLLHPIR 123
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE) HSP 1 Score: 192 bits (487), Expect = 2.060e-51 Identity = 128/311 (41.16%), Postives = 169/311 (54.34%), Query Frame = 3
Query: 12 CDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVS---EG--HSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGILA-----RRNLRAQSFEDWVL---SFTDMAAHDWCTEYIT------EKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDF 887
C DPHM G LGQ D+ G DGEWY+ V D DL VN+R+T+P+P E P+ +TGL + + EG HSLV+ VT+P+S D CP T CLA+G L+V +D GD LL P +E+ PG + +SA NLP C FG K W R +A +L+ Q DW+L + T+MA CTEY+ + GL + S H +QIVTP +RL+ G HQ D +PD WQM++ + L +A TGILGET + D +G +M G A RG+ EDY V GPL F
Sbjct: 138 CGDPHMTGFLGQKFDFVGQDGEWYAVVSDMP-DLEVNMRVTSPVPAE-PEITYITGLGIKTRDIEGLDHSLVITVTDPHSLDSA--CPVQGST-CLADGALTVELD-----GDVALLSPGEAELGPG-VAISAVNLPGACRSFGFEKYWERKKAEYVASGRRLNNDLQMQEMSDWILGDPTATNMAE---CTEYVLGATVDGQAGLFEYDSEHTSFQIVTPKGTIRLSHGRLHQLAMRDPTDRFDIPDHLTWQMNLAFDNVDLAVDA-TGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLVDGPLDNVF 433
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE) HSP 1 Score: 188 bits (477), Expect = 1.450e-48 Identity = 120/305 (39.34%), Postives = 166/305 (54.43%), Query Frame = 3
Query: 9 ICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEG-----HSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARH-YEGILARRNLRAQ-SFEDWVLSFTDMAAHDWCTEYIT-----EKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDF 887
IC DPHM G LGQ D+ G DG WYS + D +M+ VN+R+T+P+ + P+ +TGL+V++ HS+V+EV +P++ D + CP G +PCL +G L V +DG ++ L + L ++VSA NLP C FG K W R E A R LR S +W+L + C EY+ E G+ QS H +QIVTP VRL+ G HQ D LPD WQM++ + + + A GILG+T P D DG+ +M G +A RG+ EDYRV G LG+DF
Sbjct: 316 ICGDPHMTGFLGQKFDFTGEDGGWYSVIADSNMN--VNMRVTSPVAD-LPEITYITGLSVLTTDTDGLEHSIVIEVIDPHNLDSS--CPAGV-SPCLGDGALVVLLDGVES------LFAPGTVALGADVEVSAANLPGACRSFGFEKYWERKKLENARAGRLLRTTPSMGEWILGDPTATNMNECVEYVARAEAEEGGVFAHQSEHVSFQIVTPKATVRLSHGRLHQIAMRDPTDRFDLPDHLTWQMNMAIHHEDVSHAA-KGILGQTFVPTRDADGKPIMTGLEAIRGSEEDYRVDGALGVDF 607
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI) HSP 1 Score: 177 bits (450), Expect = 2.870e-45 Identity = 102/255 (40.00%), Postives = 152/255 (59.61%), Query Frame = 3
Query: 9 ICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEG-HSLVLEVTNPYSTDMTDGCPG-----GSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWA-----RHYEGILARRNLR-AQSFEDWVLSFTDMAAHDWCTEYITE-----KGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDV 722
I DDPH+ GL GQ DW+G DG WY+F+ PD L +N+R+T+ LP FP+RQLVTG+A+V+EG H++ ++ +P D+ C G GS PCL NGGL +TVDG++ L G I ++A NLP++C +FG + +W + G R+LR A++ DW+++ + M A WC +Y+ E L ++S+HA+ +I TP + +R+NVGI + + E+ DGRV+P WQMDV
Sbjct: 242 IWDDPHLTGLRGQHFDWYGQDGGWYAFLSTPDQ-LQMNLRVTSHLPATFPERQLVTGVALVTEGGHTITADIVDPL--DLAPTCHGTVDAVGS-APCLVNGGLRITVDGREQ------LQGAGEYDFDGDIHITAVNLPLECQRFGDYMMWGDLDVEQRLRG--GSRSLRSAETVFDWLVADSVMIAPAWCVKYLKELNGDVTALASMKSSHAVLRIGTPNLSLRVNVGI-NTEREQTLQDGRVVPTASFWQMDV 483 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7062.15229.1 >prot_E_fasciculatus_S2_contig7062.15229.1 ID=prot_E_fasciculatus_S2_contig7062.15229.1|Name=mRNA_E_fasciculatus_S2_contig7062.15229.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=294bp MKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTback to top mRNA from alignment at E_fasciculatus_S2_contig7062:4019..7280- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7062.15229.1 ID=mRNA_E_fasciculatus_S2_contig7062.15229.1|Name=mRNA_E_fasciculatus_S2_contig7062.15229.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3262bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7062:4019..7280- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7062:4019..7280- >mRNA_E_fasciculatus_S2_contig7062.15229.1 ID=mRNA_E_fasciculatus_S2_contig7062.15229.1|Name=mRNA_E_fasciculatus_S2_contig7062.15229.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=882bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7062:4019..7280- (Ectocarpus fasciculatus EfasUO2)back to top |