mRNA_E_fasciculatus_S2_contig7062.15229.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7062.15229.1
Unique NamemRNA_E_fasciculatus_S2_contig7062.15229.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: VWFA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 585 bits (1508), Expect = 2.460e-200
Identity = 273/301 (90.70%), Postives = 286/301 (95.02%), Query Frame = 3
Query:    3 SHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGILARRNLRAQSFEDWVLSFTDMAAHDWCTEYITEKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALLHAK 905
            SHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDL VNVRLTAPLP++FPDRQLVTGL+V+SEGHSLVLEVTNPYSTD+ DGCP GSPTPCLANGGLSVTVDG+KNVG   L+HP R E+LPGGI+VSADNLPVQCWQFGGHKIWARHYE ILARR LRAQSFEDWVLSFTDMAAHDWCTEYI+EKGLT VQS+HAIYQIVTPAVVVRLNVGIGHQDG+E DWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYD+DG  VMAGDDAYRGTPEDYRVSGPLGMDFALLH K
Sbjct:  399 SHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLRVNVRLTAPLPDDFPDRQLVTGLSVISEGHSLVLEVTNPYSTDLNDGCPDGSPTPCLANGGLSVTVDGEKNVG---LIHPIRGEILPGGIEVSADNLPVQCWQFGGHKIWARHYEAILARRKLRAQSFEDWVLSFTDMAAHDWCTEYISEKGLTGVQSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALLHQK 696          
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE)

HSP 1 Score: 450 bits (1158), Expect = 1.700e-152
Identity = 216/300 (72.00%), Postives = 242/300 (80.67%), Query Frame = 3
Query:   12 CDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGIL--ARRNLRAQSFEDWVLSFTDMAAHDWCTEYITEKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALLHAK 905
            C D +   LLGQSIDWFG+DG WYS V+DPD+DL+VNVRLTAP PEEFPDRQLVTGL+V++ GHSLV+EVT PY TD   GCP G+P PCLANGGLSV VDG+K   DSPLLH  R E LPGGIQVSA NLPVQCWQFGG KI ARHY   +   RR+L +++FE+WVLSF  MAAHDWCTEYI  K L+DVQSA AIYQI+TP VVVR NVGIGHQ G   + DGR++PDLDVW+MDVGL GLSLENE LTGILGETARPV D+ G+ VM G+ AYRGTPEDYRVSG LG DFALL  K
Sbjct:   54 CTDTYAV-LLGQSIDWFGIDGGWYSLVQDPDIDLNVNVRLTAPPPEEFPDRQLVTGLSVMAGGHSLVIEVTKPYDTDTAGGCPDGAPAPCLANGGLSVIVDGEKEADDSPLLHTIRDETLPGGIQVSAANLPVQCWQFGGDKISARHYANTIMEGRRHLLSETFEEWVLSFQHMAAHDWCTEYIAHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALLRQK 352          
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Imm (upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI)

HSP 1 Score: 351 bits (900), Expect = 3.890e-114
Identity = 174/299 (58.19%), Postives = 220/299 (73.58%), Query Frame = 3
Query:   18 DPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGILA-RRNLRA-QSFEDWVLSFT-DMAAHDWCTEYITEKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALLHAK 905
            DPHM+GL GQ I+W GVDG WYS VKD   DL +NVR+TAPLP+EFPDRQL+T LA++SEG+S+V+EV NPY T +T GCP G  +PCLANGGL + VDG++   D  L    +  V  G + +SA NLPV+C QFGGH+IWAR Y+ IL  RR LR  +S E+W+L +  +M A  WC +YI E  L D+Q+ HAI++I TP V VRLN G+ +Q   E +WDGRVLPDL+ WQMDVG+ GL ++N AL+G+LGETARPVY ++G+ VM G DA+RGT EDYRVS  LG+ FALL  K
Sbjct:   15 DPHMRGLRGQRINWSGVDGGWYSLVKDDHADLSINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVENPY-TIVTGGCPEGV-SPCLANGGLRIIVDGQEV--DELLRFSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALLDEK 309          
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 7.390e-113
Identity = 173/302 (57.28%), Postives = 221/302 (73.18%), Query Frame = 3
Query:    9 ICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGIL-ARRNLRA-QSFEDWVLSFTD-MAAHDWCTEYITEKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALLHAK 905
            +C DPHM+GL GQ IDW GVDG WYS +KD ++D+++NVRLTAPLP+EFPDRQL+T LAV+S+GHS+V+EV NPY T +T+GCP G  +PCLANGGL + VD ++   D  L       V  G + VS+ NLPV+C QFGG +IWAR Y+ ++  RR L   +S E+W+L +   MAA  WC +YI E  L D+QS HAI++I TP V VRLN G+ +Q   E +WDGRVLPDL+ WQM VG+ GL ++N AL+G+LGETARPVYD++GQVVM G DA+RGT EDYRVS  L + F LL  K
Sbjct:  111 VCGDPHMQGLRGQRIDWSGVDGGWYSLIKDDNIDININVRLTAPLPDEFPDRQLMTSLAVLSKGHSVVIEVENPY-TVVTNGCPEGV-SPCLANGGLRIIVDSQQV--DELLRFSRHVPVADGAMTVSSSNLPVECQQFGGDRIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIAENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLLDEK 408          
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 1.220e-99
Identity = 158/300 (52.67%), Postives = 205/300 (68.33%), Query Frame = 3
Query:    6 HICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGIL-ARRNLRA-QSFEDWVLSFT-DMAAHDWCTEYITEKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALL 896
            HI  DPHM+GLLGQ ++W G DG WYS +KD + DLH+NVR+TAPLP+EFPDRQL+T LA++SEG+S+V+EV NPY+TD T GCP    +PC ANGGL + VDG +             E+L    Q+            GG +IWAR Y+ IL  RR LR  +S E+W+L +  +M A  WC +YI E  L D+Q+ HAI++I TP V VRLN G+ +Q   E +WDGRVLPDL+ WQ+DVG+ GL ++  AL+G+ GETA PVYD++G+ VM G DA+RG  EDYRVS  LG+ FALL
Sbjct:   16 HIWGDPHMRGLLGQRVNWSGFDGGWYSLIKDDNADLHINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVKNPYTTD-TGGCPE-DVSPCHANGGLRIIVDGHEV-----------DELLRFSRQMP-----------GGKRIWARMYQDILEGRRQLRGGESLEEWILRYDQNMPARTWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFALL 291          
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD0_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.490e-71
Identity = 138/307 (44.95%), Postives = 189/307 (61.56%), Query Frame = 3
Query:    9 ICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVS-EGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGG-IQVSADNLPVQCWQFGGHKIWARHYEGI---LARRNLRAQS-FEDWVLSFTDMAAHDWCTEYITEK---GLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGE-EADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALLH 899
            +  D HM GLLGQ IDW+G D  WY  + +   +  VN R+TAP+P+EFP RQLV+G+++ S EG SLV+EV NP +T+ T+GC   S  PCLA G L + VDG ++     L  P  + VLPGG + VS+ NLP +C  FGG +IWA  +  +     RR+LR  + F DWVL    MAA  WC  +  E+   GL+ VQS  AI ++ T  V VR++VG+ +QD    +D +  ++P+LD WQ D+    L    E L G+LG+TAR V D DG+ + +G +A RG  E  RVSGPLG+DF  +H
Sbjct:    7 VSGDSHMVGLLGQEIDWYGEDSGWYCLLVNS--EFQVNARVTAPMPDEFPTRQLVSGVSIRSAEGPSLVVEVKNPITTE-TEGCSSTS-APCLAEGALRILVDGDES---HALQSPVENLVLPGGDLVVSSANLPAECRPFGGDRIWAAQFAAMNDASGRRSLRGHTPFADWVLEADTMAAPGWCALFAREQRLSGLSSVQSNRAILRVETGGVTVRVDVGVNYQDSVLSSDGNAVLVPELDFWQTDIAFEELRPSGE-LGGMLGDTARYVIDDDGKPITSGMEALRGPVETCRVSGPLGVDFEQMH 305          
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E8_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 2.800e-57
Identity = 89/117 (76.07%), Postives = 101/117 (86.32%), Query Frame = 3
Query:    9 ICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTR 359
            ICDDPHMKGL GQ IDWFGVDG WY+F+KD D+DLHVNVRLTAPLPEEFP+RQLVTGL+V++  HSL+LEVTNPY TD+  GC  G  TPCLANGGLSVTV+G+K + DSPLLHP R
Sbjct:    7 ICDDPHMKGLRGQHIDWFGVDGGWYAFIKDDDIDLHVNVRLTAPLPEEFPERQLVTGLSVIAGEHSLILEVTNPYDTDINGGCLDGMSTPCLANGGLSVTVNGEKQMVDSPLLHPIR 123          
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 2.060e-51
Identity = 128/311 (41.16%), Postives = 169/311 (54.34%), Query Frame = 3
Query:   12 CDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVS---EG--HSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGILA-----RRNLRAQSFEDWVL---SFTDMAAHDWCTEYIT------EKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDF 887
            C DPHM G LGQ  D+ G DGEWY+ V D   DL VN+R+T+P+P E P+   +TGL + +   EG  HSLV+ VT+P+S D    CP    T CLA+G L+V +D     GD  LL P  +E+ PG + +SA NLP  C  FG  K W R     +A       +L+ Q   DW+L   + T+MA    CTEY+       + GL +  S H  +QIVTP   +RL+ G  HQ       D   +PD   WQM++    + L  +A TGILGET +   D +G  +M G  A RG+ EDY V GPL   F
Sbjct:  138 CGDPHMTGFLGQKFDFVGQDGEWYAVVSDMP-DLEVNMRVTSPVPAE-PEITYITGLGIKTRDIEGLDHSLVITVTDPHSLDSA--CPVQGST-CLADGALTVELD-----GDVALLSPGEAELGPG-VAISAVNLPGACRSFGFEKYWERKKAEYVASGRRLNNDLQMQEMSDWILGDPTATNMAE---CTEYVLGATVDGQAGLFEYDSEHTSFQIVTPKGTIRLSHGRLHQLAMRDPTDRFDIPDHLTWQMNLAFDNVDLAVDA-TGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLVDGPLDNVF 433          
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.450e-48
Identity = 120/305 (39.34%), Postives = 166/305 (54.43%), Query Frame = 3
Query:    9 ICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEG-----HSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARH-YEGILARRNLRAQ-SFEDWVLSFTDMAAHDWCTEYIT-----EKGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDF 887
            IC DPHM G LGQ  D+ G DG WYS + D +M+  VN+R+T+P+ +  P+   +TGL+V++       HS+V+EV +P++ D +  CP G  +PCL +G L V +DG ++      L    +  L   ++VSA NLP  C  FG  K W R   E   A R LR   S  +W+L        + C EY+      E G+   QS H  +QIVTP   VRL+ G  HQ       D   LPD   WQM++ +    + + A  GILG+T  P  D DG+ +M G +A RG+ EDYRV G LG+DF
Sbjct:  316 ICGDPHMTGFLGQKFDFTGEDGGWYSVIADSNMN--VNMRVTSPVAD-LPEITYITGLSVLTTDTDGLEHSIVIEVIDPHNLDSS--CPAGV-SPCLGDGALVVLLDGVES------LFAPGTVALGADVEVSAANLPGACRSFGFEKYWERKKLENARAGRLLRTTPSMGEWILGDPTATNMNECVEYVARAEAEEGGVFAHQSEHVSFQIVTPKATVRLSHGRLHQIAMRDPTDRFDLPDHLTWQMNMAIHHEDVSHAA-KGILGQTFVPTRDADGKPIMTGLEAIRGSEEDYRVDGALGVDF 607          
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 2.870e-45
Identity = 102/255 (40.00%), Postives = 152/255 (59.61%), Query Frame = 3
Query:    9 ICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVTGLAVVSEG-HSLVLEVTNPYSTDMTDGCPG-----GSPTPCLANGGLSVTVDGKKNVGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWA-----RHYEGILARRNLR-AQSFEDWVLSFTDMAAHDWCTEYITE-----KGLTDVQSAHAIYQIVTPAVVVRLNVGIGHQDGEEADWDGRVLPDLDVWQMDV 722
            I DDPH+ GL GQ  DW+G DG WY+F+  PD  L +N+R+T+ LP  FP+RQLVTG+A+V+EG H++  ++ +P   D+   C G     GS  PCL NGGL +TVDG++       L         G I ++A NLP++C +FG + +W      +   G    R+LR A++  DW+++ + M A  WC +Y+ E       L  ++S+HA+ +I TP + +R+NVGI + + E+   DGRV+P    WQMDV
Sbjct:  242 IWDDPHLTGLRGQHFDWYGQDGGWYAFLSTPDQ-LQMNLRVTSHLPATFPERQLVTGVALVTEGGHTITADIVDPL--DLAPTCHGTVDAVGS-APCLVNGGLRITVDGREQ------LQGAGEYDFDGDIHITAVNLPLECQRFGDYMMWGDLDVEQRLRG--GSRSLRSAETVFDWLVADSVMIAPAWCVKYLKELNGDVTALASMKSSHAVLRIGTPNLSLRVNVGI-NTEREQTLQDGRVVPTASFWQMDV 483          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7062.15229.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
VWFA2.460e-20090.70domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.700e-15272.00protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Imm3.890e-11458.19upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
Uncharacterized7.390e-11357.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.220e-9952.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.490e-7144.95protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.800e-5776.07protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.060e-5141.16protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.450e-4839.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.870e-4540.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7062contigE_fasciculatus_S2_contig7062:4019..7280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1718
Hectar predicted targeting categoryother localisation
Exons4
Cds size882
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7062.15229.1prot_E_fasciculatus_S2_contig7062.15229.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7062 4829..7254 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842366.6352131-UTR-E_fasciculatus_S2_contig7062:4018..48281696842366.6352131-UTR-E_fasciculatus_S2_contig7062:4018..4828Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7062 4019..4828 -
1696842366.7126029-UTR-E_fasciculatus_S2_contig7062:7254..72801696842366.7126029-UTR-E_fasciculatus_S2_contig7062:7254..7280Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7062 7255..7280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842366.646882-CDS-E_fasciculatus_S2_contig7062:4828..51951696842366.646882-CDS-E_fasciculatus_S2_contig7062:4828..5195Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7062 4829..5195 -
1696842366.6632054-CDS-E_fasciculatus_S2_contig7062:5802..59851696842366.6632054-CDS-E_fasciculatus_S2_contig7062:5802..5985Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7062 5803..5985 -
1696842366.6818507-CDS-E_fasciculatus_S2_contig7062:6205..63451696842366.6818507-CDS-E_fasciculatus_S2_contig7062:6205..6345Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7062 6206..6345 -
1696842366.701713-CDS-E_fasciculatus_S2_contig7062:7062..72541696842366.701713-CDS-E_fasciculatus_S2_contig7062:7062..7254Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7062 7063..7254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7062.15229.1

>prot_E_fasciculatus_S2_contig7062.15229.1 ID=prot_E_fasciculatus_S2_contig7062.15229.1|Name=mRNA_E_fasciculatus_S2_contig7062.15229.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=294bp
MKGLLGQSIDWFGVDGEWYSFVKDPDMDLHVNVRLTAPLPEEFPDRQLVT
GLAVVSEGHSLVLEVTNPYSTDMTDGCPGGSPTPCLANGGLSVTVDGKKN
VGDSPLLHPTRSEVLPGGIQVSADNLPVQCWQFGGHKIWARHYEGILARR
NLRAQSFEDWVLSFTDMAAHDWCTEYITEKGLTDVQSAHAIYQIVTPAVV
VRLNVGIGHQDGEEADWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGE
TARPVYDKDGQVVMAGDDAYRGTPEDYRVSGPLGMDFALLHAK*
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mRNA from alignment at E_fasciculatus_S2_contig7062:4019..7280-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7062.15229.1 ID=mRNA_E_fasciculatus_S2_contig7062.15229.1|Name=mRNA_E_fasciculatus_S2_contig7062.15229.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3262bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7062:4019..7280- (Ectocarpus fasciculatus EfasUO2)
GTAGCCACATCTGCGATGACCCCCACATGAAGGGCCTGCTCGGCCAGAGT ATCGACTGGTTCGGCGTGGACGGCGAGTGGTACTCCTTTGTCAAGGACCC TGACATGGATCTGCACGTGAACGTGCGGCTCACGGCGCCTCTCCCCGAAG AATTTCCTGACCGCCAGCTGGTCACCGGCCTCGCGGTCGTTTCTGAGGGG CATTCTCTGGTTCTCGAGGTACGACTGTCAATGCCATGCTGTAAGCGGAG CTGCTAGTGGTGGGTCAATGCCTCGTCGGTGTTCCGAGAGTAAGTTCAAC GGGAGTTTCAGTCTTCAACCGCGGCCTGGGTATCCCGCGGGAGGGTGCCG TCTTCCGACTATGGCTCTCCTACTTTGTTGTACATGAGCATGCACTCCAT GTGTCATCTTTCCCCCACCCGTGATATTCACTCGTCATGGAACTTTAGTA TGTACGTACACTTTCGCTGTCATCTGATTCACTTTCGGTCTCTCGTTTAC TGTCCGCGTCACGTGGTCAGGTACGTGTATGGTAAAAATAAAGACCCTCT GCCCACGTTTACATGGAATTCACCCGTCAATTGACTGATCACTGGCCCCA TTAACGAGAATCACGTCCTCTGGTTGTGCGAACCCACCTCAAGTATGCTG CATGTATCGACCGCATCGAGTGCACTCTTGACCGGGGCGTAAACGTTGTG ATATAGTTTGAGATCCGGGGCTTCAACACGGGGAGTCAGGTCTCTGTCGG TTAGCTAGGGAAGGAAGTCGTGTTTTTCTAAAGGACACAATGTTTGGCAA GATCCCGGGCGGGGAATGTGATGGTGTAGGCGGATTATTATCCCGCGCCA TCTATTAGGTGGCCGTAGTGATCTTGGAGAACCTATGCATACCTCTCCAC ACCTGCCGTCACACAACGACAAACCATCGATTCAGGTGACGAACCCCTAT TCGACGGACATGACCGACGGCTGCCCCGGCGGAAGCCCGACGCCATGCCT GGCAAACGGTGGACTTAGCGTCACCGTGGATGGCAAGAAGAACGTCGGCG ATTCTCCCCTACTTCACCCCACCAGGTGCTGTCAGCATTACCGTGGGGAG TGCATGGTAGTAGAGTGTCCGCCCCGTGAAAAAGCTCCTTGGCCAGACAA TACCATGGCTTCCAGCATAGCCCGATAGAAGTTGACATTGGATTTCACCG CAGCCTTCGCCCATCGCAGCGTGACGACTCAGAAGCCACCAGTCACCATC ATCGTCCCCCACCCGCGTGCACATGATGTTCTCTGTTTGATCCAGGAGCG AGGTCCTTCCTGGTGGCATCCAAGTTTCCGCGGACAACCTCCCGGTACAG TGCTGGCAATTCGGCGGGCACAAGATCTGGGCCCGCCACTACGAAGGCAT TCTGGCGAGGCGCAATCTACGTGCCCAATCGTTCGAAGATTGGGTTTTGA GCTTCACGGACATGGCCGCCCACGACTGGTGAGTTGCTCCGCGCTTGGCA GCAGCAGTGCAAAGCATCGCAGACGAAGGGTGCCGTCGCCGCACACTTGA GAAGACGAAGATGTTCTGTGTCCGGAGCACAATACGTTCGGTGTCGTGTT TGCGCATGGTTAAACCACCACCGTCAAGAAGTCGTCAAGGGCGTCCTATG TTATGCATACTCACTACCACGGTCTCTTCTGTTGTGAATAGATGGACTAG TAGTGTGTGCGTTTTGTGGAGATTGAGGCACCCCCCAAAAAATATCTTCC ACTGCAGGTTTATAGGGCGCGAAGGTCACTTTCATCTTTTCCGTGAACCG CCGAGAAATTCACTGAACGCCCTGTCTCTGCCGACAAGAGAACGCTCTGG TACCACACCCATTTTCTACGGACTGCACCATTGTCATGACATTGCTGGGT GGTCGCCGTACACGTGAGTGAGGCAACACTAGGAACTCAATGTGTTGCGA GTGTAGCTGCATGTGTGTAAGGCTTTCGGAGCAAAACCTGTTTATGCCGT TGACCGTTTCAATCGATGTCATGCACTAACCGTGATTCATTCTATGTGCA TGGTCGTGTCTTAATTGATCGACCATACCAACCAGGTGCACCGAATATAT CACCGAGAAGGGCCTCACGGACGTCCAGTCGGCCCACGCCATATACCAGA TCGTCACACCGGCGGTTGTCGTGCGGCTCAACGTTGGCATCGGGCACCAG GACGGGGAGGAGGCTGACTGGGACGGTCGCGTGCTCCCCGACCTCGACGT GTGGCAGATGGACGTCGGCCTCACCGGTCTGTCCCTCGAGAACGAAGCGT TGACGGGAATTCTGGGAGAGACGGCCCGCCCCGTTTACGACAAGGATGGG CAGGTCGTCATGGCGGGCGACGACGCCTACCGCGGGACTCCCGAGGACTA CCGTGTGTCCGGTCCCCTGGGTATGGACTTCGCTCTTCTGCACGCCAAGT GATGCGGCGAGGCGAGGCGACGCATAGCATTTCGTTACGTCGCTTAACGC CAGAGTGTTGGCATTGTTTCGGCGTAAATATTTCCGAAAGGTGTGATGGT CCCCTTTTCTTAGCGTTCACGCCGACTCTGTGCAACACGTTGCGGTAGAT ATGCGGTTGGTCTCCGTTCTTTGACTTTGGTCCACGGATGGGTGGTGGTC ATACACCGCTTCGCGTACCGCAAATAGAGTGTTCGAAGTCCGATTTTATT GGGTGAGTGAATCAGGACTGAGGGAGTTCCGTGCACTGAGTTCCCGTGTT TTAGTGGGAATCTTAATGTCGGAACACGCTGCGTAGTATCCTGTTGGAAA TATTTCCATGTCATATTCGATGAGAGATAATTGTATTTCAACATTGATAT GTATGGTTTCACTTCATTGTACCAGGTAGTCTACATATGTAGTCTAGTTA GGTTCCAGTTCTTCTCTCGGAATCTTCCAGAAGTGAATGCTACTGTTTTC ATTGTTCAAGTAGTCAGGATTGCGTCTGAAAAATGACATACATAATAATG TAGTGGGTAGTACGTGGACGTTGTAAGAGGTTAGATGCCATCATTTAGTC GTAGATATGTCAGTGCAAGTTATAATTGGTTGTATGCATACTACGTAAGT ATTTTCCGTTAACGCCTCAGCTTGCCAGTACCGCAATCTGAACACGGTTG TCTACTGGCTGACGGTTCTGGTTCTACATGAAAACAAAAACATGGGTTCT ATGTATCTATGAATACATAAACAAACGCAAAGCCACCAAGGCATCAAGGA GAAGAACTTCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7062:4019..7280-

>mRNA_E_fasciculatus_S2_contig7062.15229.1 ID=mRNA_E_fasciculatus_S2_contig7062.15229.1|Name=mRNA_E_fasciculatus_S2_contig7062.15229.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=882bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7062:4019..7280- (Ectocarpus fasciculatus EfasUO2)
ATGAAGGGCCTGCTCGGCCAGAGTATCGACTGGTTCGGCGTGGACGGCGA
GTGGTACTCCTTTGTCAAGGACCCTGACATGGATCTGCACGTGAACGTGC
GGCTCACGGCGCCTCTCCCCGAAGAATTTCCTGACCGCCAGCTGGTCACC
GGCCTCGCGGTCGTTTCTGAGGGGCATTCTCTGGTTCTCGAGGTGACGAA
CCCCTATTCGACGGACATGACCGACGGCTGCCCCGGCGGAAGCCCGACGC
CATGCCTGGCAAACGGTGGACTTAGCGTCACCGTGGATGGCAAGAAGAAC
GTCGGCGATTCTCCCCTACTTCACCCCACCAGGAGCGAGGTCCTTCCTGG
TGGCATCCAAGTTTCCGCGGACAACCTCCCGGTACAGTGCTGGCAATTCG
GCGGGCACAAGATCTGGGCCCGCCACTACGAAGGCATTCTGGCGAGGCGC
AATCTACGTGCCCAATCGTTCGAAGATTGGGTTTTGAGCTTCACGGACAT
GGCCGCCCACGACTGGTGCACCGAATATATCACCGAGAAGGGCCTCACGG
ACGTCCAGTCGGCCCACGCCATATACCAGATCGTCACACCGGCGGTTGTC
GTGCGGCTCAACGTTGGCATCGGGCACCAGGACGGGGAGGAGGCTGACTG
GGACGGTCGCGTGCTCCCCGACCTCGACGTGTGGCAGATGGACGTCGGCC
TCACCGGTCTGTCCCTCGAGAACGAAGCGTTGACGGGAATTCTGGGAGAG
ACGGCCCGCCCCGTTTACGACAAGGATGGGCAGGTCGTCATGGCGGGCGA
CGACGCCTACCGCGGGACTCCCGAGGACTACCGTGTGTCCGGTCCCCTGG
GTATGGACTTCGCTCTTCTGCACGCCAAGTGA
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