mRNA_E_fasciculatus_S2_contig7060.15227.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7060.15227.1
Unique NamemRNA_E_fasciculatus_S2_contig7060.15227.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7060.15227.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI8_ECTSI)

HSP 1 Score: 684 bits (1765), Expect = 1.940e-239
Identity = 355/454 (78.19%), Postives = 387/454 (85.24%), Query Frame = 1 
Query:    1 METRGVCSKKTQHNKSGRAGLRSSPR-CGREAGKNKPGGCDAGLPHHVMLEIVSFLDTRSIVRGRCLSRAFNSDAPALVKTLDFSMGQQSPSAETIKLFSEVRQVNLNGNRDLVHAVVEGLRGWGSSLRLGVSRHRSIKEQEEPLSKAATTALCALPLTELDMNRVVVEFPRLLRMHAWRTLRRLVIRDGLLEDGSLESLFKSIPEGPLPLRHLDLSRNLHGGYDAVSPFADALRSFPDLECLELSACRIVHNSGNLIVRTLLEGACPELKALNLSLNFFTDGLLEFLCEGLGKPGHGLLNLQKLGFGSRVTGDEMITCFDSIGEALAAGGLPKLDFLLLQGDVRPTEVSEVLSLLSGAGCPMLEVVKLERSPRSSHGEDEYAAEEVAQCLFQLVLSDH-PHLREVHVLGMALHEGMDKDQEAGRASAFYRATNDSTWHDLAVASQARGIQVFV 1356
            METRG+ +K+ QHNKSGRAGLRSSPR C REA  NKPGGCDA LPHHV+LEIVSFLDTRSIV GRCLSRAF+SDAPALVKTLDF MGQQSPSAETIKLF EVRQVNL+GNRDLVHAVV GLRGWGSSLRL VS H S+ ++EEPLSK ATT LCALPLTELDM  VV+EFP LL M+AWRTL+RLVIRD  L D SLESL KSIPEG LPLRHLDLSRNL GGYD V PFADALRSFPDLE LELSACRI   SG+ IVRTLLEGACP+L+ L+LSLNFFT+GLL  LCEGLG PGHGLLNL+KLGFGSRVTGDEMITCF+ +G+ALAAGGLPKLDFL LQGDV P +VS VLS L G  CPML +VKLERS  S+ GEDE+ AE+ AQ +F LV+S H PHLREVH LGMAL+EGM+K  EAGR SAFYRA N STWH LAV  +ARG+QVFV
Sbjct:    1 METRGMRAKEKQHNKSGRAGLRSSPRRCAREARNNKPGGCDADLPHHVVLEIVSFLDTRSIVSGRCLSRAFSSDAPALVKTLDFHMGQQSPSAETIKLFPEVRQVNLDGNRDLVHAVVAGLRGWGSSLRLDVSLHDSVPQKEEPLSKTATTDLCALPLTELDMMEVVIEFPPLLPMNAWRTLQRLVIRDAFLGDESLESLSKSIPEGALPLRHLDLSRNLFGGYDTVLPFADALRSFPDLEWLELSACRICRGSGDRIVRTLLEGACPKLRTLDLSLNFFTNGLLASLCEGLGAPGHGLLNLRKLGFGSRVTGDEMITCFEKVGKALAAGGLPKLDFLHLQGDVGPRQVSPVLSRLRGGACPMLAMVKLERSLHSTLGEDEFGAEDAAQSMFNLVISGHIPHLREVHALGMALNEGMEKANEAGRDSAFYRARNQSTWHHLAVEGKARGVQVFV 454
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7060.15227.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.940e-23978.19protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7060contigE_fasciculatus_S2_contig7060:2998..5456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2397
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-04_002030.1
Cds size1359
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842366.5151093-CDS-E_fasciculatus_S2_contig7060:2997..43561696842366.5151093-CDS-E_fasciculatus_S2_contig7060:2997..4356Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7060 2998..4356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842366.5327544-UTR-E_fasciculatus_S2_contig7060:4356..45201696842366.5327544-UTR-E_fasciculatus_S2_contig7060:4356..4520Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7060 4357..4520 +
1696842366.5460463-UTR-E_fasciculatus_S2_contig7060:4582..54561696842366.5460463-UTR-E_fasciculatus_S2_contig7060:4582..5456Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7060 4583..5456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7060.15227.1prot_E_fasciculatus_S2_contig7060.15227.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7060 2998..4356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7060.15227.1

>prot_E_fasciculatus_S2_contig7060.15227.1 ID=prot_E_fasciculatus_S2_contig7060.15227.1|Name=mRNA_E_fasciculatus_S2_contig7060.15227.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=453bp
METRGVCSKKTQHNKSGRAGLRSSPRCGREAGKNKPGGCDAGLPHHVMLE
IVSFLDTRSIVRGRCLSRAFNSDAPALVKTLDFSMGQQSPSAETIKLFSE
VRQVNLNGNRDLVHAVVEGLRGWGSSLRLGVSRHRSIKEQEEPLSKAATT
ALCALPLTELDMNRVVVEFPRLLRMHAWRTLRRLVIRDGLLEDGSLESLF
KSIPEGPLPLRHLDLSRNLHGGYDAVSPFADALRSFPDLECLELSACRIV
HNSGNLIVRTLLEGACPELKALNLSLNFFTDGLLEFLCEGLGKPGHGLLN
LQKLGFGSRVTGDEMITCFDSIGEALAAGGLPKLDFLLLQGDVRPTEVSE
VLSLLSGAGCPMLEVVKLERSPRSSHGEDEYAAEEVAQCLFQLVLSDHPH
LREVHVLGMALHEGMDKDQEAGRASAFYRATNDSTWHDLAVASQARGIQV
FV*
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mRNA from alignment at E_fasciculatus_S2_contig7060:2998..5456+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7060.15227.1 ID=mRNA_E_fasciculatus_S2_contig7060.15227.1|Name=mRNA_E_fasciculatus_S2_contig7060.15227.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2459bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7060:2998..5456+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGACCCGTGGAGTGTGCTCGAAGAAAACGCAGCACAACAAATCCGG
ACGGGCCGGGCTTCGCTCCTCCCCCCGCTGCGGGAGAGAGGCTGGAAAGA
ACAAGCCGGGGGGCTGCGATGCCGGCCTCCCACACCACGTCATGCTGGAA
ATCGTGTCCTTCCTCGATACCCGGTCTATCGTACGTGGCCGGTGCTTGTC
TCGCGCGTTCAACAGCGACGCACCGGCGCTGGTCAAGACCCTGGACTTCA
GCATGGGGCAGCAGTCTCCGTCCGCCGAAACGATCAAGCTGTTCTCCGAG
GTCAGGCAGGTGAACCTCAACGGCAATCGGGACCTGGTGCACGCGGTTGT
CGAAGGGCTCCGTGGGTGGGGTTCCTCACTGCGACTGGGCGTTTCCCGCC
ACAGATCCATCAAAGAGCAGGAGGAGCCGCTGAGCAAGGCGGCCACCACC
GCCCTGTGCGCGCTGCCGCTGACCGAGCTCGACATGAACAGGGTCGTCGT
CGAGTTTCCGCGGTTGCTTCGGATGCACGCGTGGCGAACGCTGCGGAGGC
TCGTGATCCGCGACGGCTTGCTCGAGGACGGATCCCTGGAGAGCCTGTTC
AAGTCCATCCCTGAGGGTCCCCTCCCGCTGCGCCATCTTGACCTCTCTAG
AAACCTCCACGGGGGCTACGACGCCGTGTCGCCGTTCGCGGACGCGCTCC
GGTCCTTCCCCGACTTGGAGTGCCTCGAGCTCTCGGCGTGCCGCATCGTG
CACAATTCGGGCAACCTCATCGTCCGCACGCTGCTCGAGGGCGCCTGCCC
GGAGCTCAAGGCCCTCAACCTCTCCCTCAACTTCTTCACCGACGGTCTCC
TCGAGTTCCTGTGCGAGGGGCTGGGGAAGCCGGGGCACGGGCTGCTCAAC
CTGCAGAAGCTGGGCTTCGGCTCGCGCGTCACAGGCGACGAGATGATTAC
TTGCTTCGACAGCATCGGCGAAGCCCTCGCCGCCGGCGGCCTGCCCAAGC
TGGACTTCCTCCTCCTTCAGGGCGACGTACGGCCGACAGAGGTCTCCGAG
GTGCTGAGCCTGTTGAGTGGCGCGGGTTGCCCGATGCTGGAGGTGGTGAA
GCTGGAGCGTTCTCCCCGCTCCTCGCATGGCGAGGACGAGTACGCAGCCG
AGGAAGTGGCACAGTGCTTGTTCCAGCTGGTGCTCTCGGACCACCCGCAC
CTCCGGGAGGTGCACGTGCTGGGCATGGCCCTGCACGAGGGGATGGACAA
AGACCAAGAGGCGGGGCGTGCCTCGGCGTTCTACAGGGCCACGAATGACT
CAACCTGGCACGATCTCGCCGTCGCGAGCCAGGCTAGAGGTATCCAGGTG
TTTGTCTAACCTTCTCTGTAGCTTAGACGCGGTGAGGTGGTAAGAAGGGT
CGTTGATTCGCGAGGAAATAGTCGTTAACGCGTTGACTTCTTCGCGACAG
ACGTCTCCTGCTATCGTGAACCCCCGCAACGATGTCGGTTTTGTAAGCTG
CATATTTAAACATGAATCGAGTATTGTTTTCTGTTCATGATCCATCGCAG
AATTTTGAAACTGCGAACTTTGGACGCGTTTTTTTTTTTTTGTCGCCATC
TTTCGGAGCTTCAACTCCTGAAGCTGGGAGTGCCGTGAGAGAGAACTCAG
CGTGTGATTTTTTGTCTACTCGCTTCTTGCGTGGGTCGTGTGCTGCGGAT
ACGGCTTCCACGGCGTGCTCGTGTGGCAGGATTTAGGCGTTTGCCGATAC
ATGGTCTCCCCGCAGCTAGCTGCAGATCGGCTCTCCATGAGGCATATTTT
TTTATCGCGTTGGTATGTTGTATGCATACGGCGTGTGTTGTCACCCCTCG
TGGTTAACTCCCGGTGCTGTTGTGGGCCTTCTTTCGCGCAAGGCCAGCGT
AGCATGGAATCTTTTTTTGTGCATGTGGTGTAGGCGCCTTGTTTGCAGGA
GCAACGTTGTATCTCGCGGGATAGGTTTTCTGTGTTGAAAAGGGCCACTG
AACGGCTGTATGTTTGTTTTGTGTTGTTTGGCTTTGTTAAACTGAGGCGT
GTCGTTTGACCCTGCACCGAGCAACCTGCGGTGCTGCTGTAGCGTAGTCG
GGGTATGTCAAACTGCGTAGCGACGTTATGTGCGCTTTTCTTGGCATCTC
TTGGCTTGAGTGTAGCTGACGTGCCGGCATAGATAACAGCGGTACCTGCT
GTTGCAGTCTTTGGCTTGCGCCCAGAACGTGTTGAAGTGCCTGTTGTGGA
GATGCTGCATGCTGGTATCTTCGTATTAGATCCAAGAGGGAATGCCTCGG
ACATCAAGTAGGTGTTGTCGGAGTAGGTGAGGAAGCATTTACCAGGTTTC
TCCAGTGCTATCGACAAATGCTGCGCGACTTTTTGTTCCGTGTTCGCTGC
TCGTTGGCGACCGGAACAAACAGAGGAAGCAGCTAGCTATGGCTATGCTT
TTGAGGGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7060:2998..5456+

>mRNA_E_fasciculatus_S2_contig7060.15227.1 ID=mRNA_E_fasciculatus_S2_contig7060.15227.1|Name=mRNA_E_fasciculatus_S2_contig7060.15227.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1359bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7060:2998..5456+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGACCCGTGGAGTGTGCTCGAAGAAAACGCAGCACAACAAATCCGG
ACGGGCCGGGCTTCGCTCCTCCCCCCGCTGCGGGAGAGAGGCTGGAAAGA
ACAAGCCGGGGGGCTGCGATGCCGGCCTCCCACACCACGTCATGCTGGAA
ATCGTGTCCTTCCTCGATACCCGGTCTATCGTACGTGGCCGGTGCTTGTC
TCGCGCGTTCAACAGCGACGCACCGGCGCTGGTCAAGACCCTGGACTTCA
GCATGGGGCAGCAGTCTCCGTCCGCCGAAACGATCAAGCTGTTCTCCGAG
GTCAGGCAGGTGAACCTCAACGGCAATCGGGACCTGGTGCACGCGGTTGT
CGAAGGGCTCCGTGGGTGGGGTTCCTCACTGCGACTGGGCGTTTCCCGCC
ACAGATCCATCAAAGAGCAGGAGGAGCCGCTGAGCAAGGCGGCCACCACC
GCCCTGTGCGCGCTGCCGCTGACCGAGCTCGACATGAACAGGGTCGTCGT
CGAGTTTCCGCGGTTGCTTCGGATGCACGCGTGGCGAACGCTGCGGAGGC
TCGTGATCCGCGACGGCTTGCTCGAGGACGGATCCCTGGAGAGCCTGTTC
AAGTCCATCCCTGAGGGTCCCCTCCCGCTGCGCCATCTTGACCTCTCTAG
AAACCTCCACGGGGGCTACGACGCCGTGTCGCCGTTCGCGGACGCGCTCC
GGTCCTTCCCCGACTTGGAGTGCCTCGAGCTCTCGGCGTGCCGCATCGTG
CACAATTCGGGCAACCTCATCGTCCGCACGCTGCTCGAGGGCGCCTGCCC
GGAGCTCAAGGCCCTCAACCTCTCCCTCAACTTCTTCACCGACGGTCTCC
TCGAGTTCCTGTGCGAGGGGCTGGGGAAGCCGGGGCACGGGCTGCTCAAC
CTGCAGAAGCTGGGCTTCGGCTCGCGCGTCACAGGCGACGAGATGATTAC
TTGCTTCGACAGCATCGGCGAAGCCCTCGCCGCCGGCGGCCTGCCCAAGC
TGGACTTCCTCCTCCTTCAGGGCGACGTACGGCCGACAGAGGTCTCCGAG
GTGCTGAGCCTGTTGAGTGGCGCGGGTTGCCCGATGCTGGAGGTGGTGAA
GCTGGAGCGTTCTCCCCGCTCCTCGCATGGCGAGGACGAGTACGCAGCCG
AGGAAGTGGCACAGTGCTTGTTCCAGCTGGTGCTCTCGGACCACCCGCAC
CTCCGGGAGGTGCACGTGCTGGGCATGGCCCTGCACGAGGGGATGGACAA
AGACCAAGAGGCGGGGCGTGCCTCGGCGTTCTACAGGGCCACGAATGACT
CAACCTGGCACGATCTCGCCGTCGCGAGCCAGGCTAGAGGTATCCAGGTG
TTTGTCTAA
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