mRNA_E_fasciculatus_S2_contig706.15225.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig706.15225.1
Unique NamemRNA_E_fasciculatus_S2_contig706.15225.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig706.15225.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA3_ECTSI)

HSP 1 Score: 334 bits (857), Expect = 1.070e-107
Identity = 166/176 (94.32%), Postives = 172/176 (97.73%), Query Frame = 1 
Query:  385 QHLGVKANSFHPSTPRSFYSLTKNKPEGKDMKQIVHDFALSQENGALSSRYEWPLSPDGSKADASFDITDAYLIARYSWHRDVFRAVADNSGAKESRFAESFRSLHSKNLLAAEKRAIEMFVNGDMPAAKGKRKLKPMTERSARNAHRKLQDARFTKAYETALMEWFQQRVLRAGL 912
            +HLGVKANSFHPSTPRSFYSLTKNKPEGKDMKQIVHDFALSQENGAL SRYEWPLSPDGSKADAS+DITDAYLIARYSWHRDVFRAVADNS AK+ RFAESFRSLHSKNLLAAEKRAIEMF+NGDMPAAKGK+KLKPMTERSARNAHRKLQDARFT+AYETALMEWFQQRVL AGL
Sbjct:  268 KHLGVKANSFHPSTPRSFYSLTKNKPEGKDMKQIVHDFALSQENGALHSRYEWPLSPDGSKADASYDITDAYLIARYSWHRDVFRAVADNSAAKD-RFAESFRSLHSKNLLAAEKRAIEMFINGDMPAAKGKKKLKPMTERSARNAHRKLQDARFTRAYETALMEWFQQRVLGAGL 442
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig706.15225.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.070e-10794.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig706contigE_fasciculatus_S2_contig706:20857..25054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score271.2
Seed ortholog evalue2.9e-70
Seed eggNOG ortholog2880.D7FVA3
Model size1319
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2C0HS@1,2RXFR@2759
Cds size441
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig706.15225.1prot_E_fasciculatus_S2_contig706.15225.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig706 22041..24650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842366.371657-UTR-E_fasciculatus_S2_contig706:20856..213151696842366.371657-UTR-E_fasciculatus_S2_contig706:20856..21315Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig706 20857..21315 +
1696842366.3829694-UTR-E_fasciculatus_S2_contig706:22025..220401696842366.3829694-UTR-E_fasciculatus_S2_contig706:22025..22040Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig706 22026..22040 +
1696842366.4423847-UTR-E_fasciculatus_S2_contig706:24650..250541696842366.4423847-UTR-E_fasciculatus_S2_contig706:24650..25054Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig706 24651..25054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842366.3931751-CDS-E_fasciculatus_S2_contig706:22040..220991696842366.3931751-CDS-E_fasciculatus_S2_contig706:22040..22099Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig706 22041..22099 +
1696842366.403653-CDS-E_fasciculatus_S2_contig706:22802..229401696842366.403653-CDS-E_fasciculatus_S2_contig706:22802..22940Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig706 22803..22940 +
1696842366.4140108-CDS-E_fasciculatus_S2_contig706:23599..237321696842366.4140108-CDS-E_fasciculatus_S2_contig706:23599..23732Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig706 23600..23732 +
1696842366.425625-CDS-E_fasciculatus_S2_contig706:24539..246501696842366.425625-CDS-E_fasciculatus_S2_contig706:24539..24650Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig706 24540..24650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig706.15225.1

>prot_E_fasciculatus_S2_contig706.15225.1 ID=prot_E_fasciculatus_S2_contig706.15225.1|Name=mRNA_E_fasciculatus_S2_contig706.15225.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=147bp
MKQIVHDFALSQENGALSSRYEWPLSPDGSKADASFDITDAYLIARYSWH
RDVFRAVADNSGAKESRFAESFRSLHSKNLLAAEKRAIEMFVNGDMPAAK
GKRKLKPMTERSARNAHRKLQDARFTKAYETALMEWFQQRVLRAGL*
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mRNA from alignment at E_fasciculatus_S2_contig706:20857..25054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig706.15225.1 ID=mRNA_E_fasciculatus_S2_contig706.15225.1|Name=mRNA_E_fasciculatus_S2_contig706.15225.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4198bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig706:20857..25054+ (Ectocarpus fasciculatus EfasUO2)
GTCGATGCCAAGGGAGACTCATCGATCATTACACCTTTGTCCGTCTTGCC
GCCGTCACCCCCAGAGAGGAATGGGAGCTCGGAGGGCTCTTGATGCCCAG
TGCGATATACTAGGCAGACAACAAGAATCCTTTGCAGCCCTCACGCCGCG
CGTATATGTCAAGGGAAGATGTGCTCGTTTCTGCAGGAGGTATTGAGGTA
TTGGACGTTCCTTTGTGGTTTGTGGTCATCAAGCCAAGCGCTGCACTCCT
TGTATTTTAGTCGCTGCACGTGAACTTCCAACCCCGTGGACCCTCCCTCC
CCCCGACATGCCTTGCTATCGCGTTTCTATGGTCCTTTGCCATGCGGTTG
GTTCCCTGTGGTGTCGTTGCTGTTGTTCAACATACAGCACCTAGGAGTGA
AAGCGAACAGCTTTCACCCTTCGACACCGAGGTCGTTCTACAGCCTCACC
AAGAATAAGGCAAGGCGATAGTCTAACCTTTCAATGTAAAAGCTATTAGC
TATTAACGTACGGCCTTCTGAGAGTACCGTGCACGCTGCATGTGCAGTAC
ACTCCGGTACGCTAATAAAGATTGTTTGAGTGTTTTGTGTGGTGGTGCGA
TCGATCGATGCTGTGTGGTGGCGTCGAATCCTGGTGTGTTAGGTGTTAGG
TGTTAGTGTAAGCGACGGCGTTGGAAATTTGGGCAGAAGTAGGTTGTGTT
TCGCGTCTTTTTTGTGCCGTACGTGGGAGTGGATTACATACAATACCGGA
CTGATATTTGCGATCCCGTCGGGACTATGGTTGGGCTGGTCCCAAGCCTT
GACGGCTTTGTGGCCCTCGTGTTGGCGTCTTAGGTCATGAGTGTATCCCA
CGTTCGATGTAGGTACTTGCTTGTTGGAAGGGATGGTCTCCAGAATTACC
CACCCACCTCTGCTAGCGAGGTATTCGGGGGCGAAGAGGAAGTTGTGGTC
TCTCTCTGTCACTTCATCCCAGAGATTTAGATACAATCTGCGGTTCCATG
ACATGTTCCAAATCTGGATCCATTCGATCGGCGTGGAACTACTGCTGTTC
ACGGTGTGCTGTCCTACTGCTGTTTCACTGCCAATTGACTGCACTACTCC
ATGTTCTTCTCTTGCGAGTGTGCCATCGTTGATCTTTGTCTTCCCGCTCT
CGATCTCGAAACGTCGCAGCCCGAAGGCAAGGACATGAAGCAAATCGTGC
ACGACTTCGCGCTTAGCCAGGAAAACGGGGCCTTGAGTTCCAGGTGCGGC
AGATTTTCTTCCATGGAACAGCAGCTGCGAGCGCACATAGAAATAAATCT
ACGTCGGCTTAACTGCCTCTGACGTATGTAATTTTGCTGGGCAGTCATCG
TCGCAGGGACAGCTATGTAGTCGCCTACGTATGTTATATGTCGGATACGG
GCGCCTCGATCGTCCGTGAAAAGAGATGCATGTTCGATTCGATTCGCCGT
CACGTGTGAGAGAGCCGGGCTGCAAGAGACACGGCCGCCATCCATAGGTT
TCTCACTCTGTCCATCGACCATCATCATCGTCGTGCGCTTACCCGACCTT
GAGAGTTTCCACATGGTTAGAACAAGAAGCGAGTTGTATGGTATGCATAT
GGTTCGGCTAGGCGAAAATATTGACTGCGGGTTCTTGCATCAGTCATGCC
TACTCGTACAGGAGTGAATCGTCCCCAAGCTATTGCTTGGATTGAAAATT
CTGGCTTGTATTGTTGCATCAGTCATGGGTTGGGTGCTGGTTTGCGCTTG
CTTACTCGTACAGGAGGAAATCGTCCCCCCAAGTCATCGCTTCGACTTAA
AAGTTGTATTTTGGGGCTCGGAAATCCCCCTCCACTGCTTTTTGAGGGAA
TGGCACGAACTTGTATCACCGAAGGAAACGAAATCAAGCCCGTGCTTACT
GCGACGCATATGCATCCTTAAGCACGTCTGAACCTTGCCGTAACAGGTAC
GAGTGGCCACTGTCCCCCGACGGTTCGAAGGCAGACGCTAGCTTCGACAT
CACGGACGCCTACCTGATCGCGCGATATTCGTGGCATAGAGATGTCTTCC
GGGCAGTGGCCGACAACAGCGGTGCCAAAGAAAGGTGGGCACGCGTTCCG
TCCAGCTGCTGCATGATCCATGATCCGTGTTGCGTGTCCGATTCCTTTGT
GTTGGCCATGAGTGTGGTGTGTCCTTTACTGGCCCGTGGCTTGTAAGGCC
TCGGCATGTCTATTGGAAACGTTTGTGGTAATACCTGCAGCCATGCAGGA
AGAGAAGGTATGGGATACAACGAAGGTCAGAACGACGGTGAATCGTCAAG
ACGCCATTACCATTCCACGACATACACGACATGACATGACATGACATGAC
ATGACATGACATGACATGACATGACATGACATGACATGAGAAACAGAACG
GGCCCGGCATCGAGAAACAGAGGCTTACATTTACATTTACATTTTCACGA
CCGCAGTGAACGTAGGGTAGAGAAACAGCTACATAGCTCAGCGGTTGACC
CTAAGACACACTTTCAAGCTCGACATTTTAAACATGTGTGCTCGGCGATG
GCGACGAAACAAGCGAGAGAGAAAGAGCTTCATTCACGCCCGACCAACCC
GAATTTTGTCCGCGTTTCTTGATTGCGTGCCCGTTCTGTATGATCCCCTC
TTTTCTTCCATTTTGTCACAACATGTCTTGGCTGGTCGTCATGCCTCTCC
TCTCTCCTGTACTGTACTGCTGTGTGCGTTGTGTCCATGAGAGCAGGTTC
GCGGAGAGCTTCCGGTCGCTGCACAGCAAGAACCTGCTAGCCGCCGAGAA
GCGGGCTATCGAGATGTTCGTCAACGGAGACATGCCTGCGGCGAAGGGGA
AGAGGAAACTCAAGCCCATGACCGAGGTACTCTAGTTCACACCCAAAGCA
ACCGCAAGTTTTGCTCTCCTTCCAAGTCGGAAGACTTCGACCATGAGACC
GACCGTGATTCAGCCTCCCTCCCTCTCGCTTCTTTTTAGCATAGAGCGGA
TGATCTTGGCGCGATTCTTCCCCTAATCTAGTCCCTAAACATCGTTTTAC
GGCCGCCACCACAGCGGTACTGTATGTATTGTAGTCTCGGATTTTGTTGC
CGTGGCAGAGCAACAGAGCAACACGGCAAGGGCAAAAAAGTAGAGTGCTG
GGGAGAGTGGGGGGGGGGGGTTCAGCCCGAGTTTTTGGTGTAGAAAGGCG
GTGATTTCTCGAGGGGGGGTTGTTTTGTTGAAAGCCAAGAGAATGGTCAC
ACCCACCAATACCTTTATACCTGGGCTGCAATTAGCAATTAGTGCGTGAG
TGGGTGACGATGGCCAGCCACCCTCTGTCAGGCCAGAGTTAGTTGGGCCT
CGCTTTTGGAGACCAGAGTTGTCCTGATCCCACACCGGAATAGACGCCCT
AGCCCTCCCTGCAACCCCCCCTGCCGCCCCAACGACATGCCTTCGATTCC
GTCTAACACCTCCACCACCCTCTGGATTCGCCGCCTTTACTCTTGACATG
CTTTACTTCCAATCCACCCTTGACATGCTTTACTCCCAATCCACCCTTGA
CATGCTTCACGAGCAAACGTCGTCCCTGCCCGTGCACGTCTGTCTGACAC
TGCTGTGTATCTGTACACCGGAAACTGACACTGACGAACGTGTTTGTGCA
ACAAACTGCAACGATCAACGCCACTACCAACAGCGGAGCGCGAGGAATGC
CCACCGAAAGCTGCAAGACGCCAGATTTACCAAGGCATACGAGACGGCGC
TCATGGAGTGGTTTCAACAACGAGTGCTCCGGGCCGGTTTGTGACAGGAA
ATTGAAAAATCTAGACCGCCCGCGGGCAGCTAATACCCATCGTGGAGGCA
GTGGAGTGGTTCGAGGATCATCGCAGCGCGACATGAGACTGCTAGAGAGA
GAACAGCATTCATCTGCTAGCAGCTATGCACAGTTCTAGATGACATACAA
TGGCGGGTGGGGATGTAAGCAAACAGCAAATAGGGTTGAAGCGAAACCTA
TTATAGTCGCATCCAAGGGTCGGTCGGCTTTTGCGCTTGGAAAGTCTCAA
GTGTAAGTGTGTCATGTCTGTGGTGTCCACGTTGAGCATGTACGTACGTC
TTGTATGTCAGGGTAGTACACTGCTGCACGTTATAAGTCGTGGCCAACGG
CCGCACTCGACAGATAACAGCTTCAGCAACGGCTCAGATTTTGCTTCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig706:20857..25054+

>mRNA_E_fasciculatus_S2_contig706.15225.1 ID=mRNA_E_fasciculatus_S2_contig706.15225.1|Name=mRNA_E_fasciculatus_S2_contig706.15225.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=441bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig706:20857..25054+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGCAAATCGTGCACGACTTCGCGCTTAGCCAGGAAAACGGGGCCTT
GAGTTCCAGGTACGAGTGGCCACTGTCCCCCGACGGTTCGAAGGCAGACG
CTAGCTTCGACATCACGGACGCCTACCTGATCGCGCGATATTCGTGGCAT
AGAGATGTCTTCCGGGCAGTGGCCGACAACAGCGGTGCCAAAGAAAGCAG
GTTCGCGGAGAGCTTCCGGTCGCTGCACAGCAAGAACCTGCTAGCCGCCG
AGAAGCGGGCTATCGAGATGTTCGTCAACGGAGACATGCCTGCGGCGAAG
GGGAAGAGGAAACTCAAGCCCATGACCGAGCGGAGCGCGAGGAATGCCCA
CCGAAAGCTGCAAGACGCCAGATTTACCAAGGCATACGAGACGGCGCTCA
TGGAGTGGTTTCAACAACGAGTGCTCCGGGCCGGTTTGTGA
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