mRNA_E_fasciculatus_S2_contig7056.15220.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7056.15220.1
Unique NamemRNA_E_fasciculatus_S2_contig7056.15220.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7056.15220.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG5_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.020e-30
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 2 
Query:    2 YAALVARARDVMQAGPQHQALLPAAETPKPWDTVVAATYSNLKNVPVLFSRSATGGKGRW 181
            YAALVARARDVMQAGPQHQALLPAAETPKPWDTVVAATYSNLKNVPVLFSRSATGGKGRW
Sbjct: 1553 YAALVARARDVMQAGPQHQALLPAAETPKPWDTVVAATYSNLKNVPVLFSRSATGGKGRW 1612
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BLAST of mRNA_E_fasciculatus_S2_contig7056.15220.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.680e-24
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 2 
Query:   32 VMQAGPQHQALLPAAETPKPWDTVVAATYSNLKNVPVLFSRSATGGKGRW 181
            VMQAGPQHQALLPAAETP+PWDTVVAATYSNLKNVPVLFSRSATGGKGRW
Sbjct:  874 VMQAGPQHQALLPAAETPRPWDTVVAATYSNLKNVPVLFSRSATGGKGRW 923
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7056.15220.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.020e-30100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.680e-2498.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7056contigE_fasciculatus_S2_contig7056:5182..5859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842365.748097-CDS-E_fasciculatus_S2_contig7056:5181..52121696842365.748097-CDS-E_fasciculatus_S2_contig7056:5181..5212Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7056 5182..5212 +
1696842365.7592425-CDS-E_fasciculatus_S2_contig7056:5707..58591696842365.7592425-CDS-E_fasciculatus_S2_contig7056:5707..5859Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7056 5708..5859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7056.15220.1prot_E_fasciculatus_S2_contig7056.15220.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7056 5182..5859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7056.15220.1

>prot_E_fasciculatus_S2_contig7056.15220.1 ID=prot_E_fasciculatus_S2_contig7056.15220.1|Name=mRNA_E_fasciculatus_S2_contig7056.15220.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=61bp
LRRPCGKGPRRHASRPAAPGSAPRGGDAQAVGYRGRGHLLQPQERAGALQ
PERDGGQGSLD
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mRNA from alignment at E_fasciculatus_S2_contig7056:5182..5859+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7056.15220.1 ID=mRNA_E_fasciculatus_S2_contig7056.15220.1|Name=mRNA_E_fasciculatus_S2_contig7056.15220.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7056:5182..5859+ (Ectocarpus fasciculatus EfasUO2)
CTACGCCGCCCTTGTGGCAAGGGCCCGAGACGTGAGAGCCGGCGTCATTG
TAAAAAACACACGAAGGAAGGATCACCTGCCCCTTCACGTTATATAGGGC
GAAAGGACGCGGACACTCGTCGTTGTTCGTGTGTGACGTCGGCTTTTTTT
ATGGGGGTTTCGGTAGGCTTGGCGGCTTTCGGTACGTGTTTTTCTGAACC
GCATCGGCCCCCGGGGTCACACAGGAGGAAGGCCACACAGGAGTTTTTTT
TTATTGTTTTGTTTTGGAACGAAGGAAAGCACTTTGATTTTCTCGCTAAC
CTGCTGACCAACGAAACAACGTCTGACAGTCTCGCTAACCTGCTGACCAA
CGAAACGAAACAACGTCTGACAGTCTCGCTAACCTGCTGACCAACGAAAC
GAAACAACGTCTGACAGTCTCAGTGCCGTTGAAAACACAAATTGCTTCTT
AAGGCCACGATCTGTGCATGCGTGTTTTGTTTTTTCCTTGTTTGGGGTGT
GTGTGTGTGATGGTCGCCTGGATCAGGTCATGCAAGCCGGCCCGCAGCAC
CAGGCTCTGCTCCCCGCGGCGGAGACGCCCAAGCCGTGGGATACCGTGGT
CGCGGCCACCTACTCCAACCTCAAGAACGTGCCGGTGCTCTTCAGCCGGA
GCGCGACGGGGGGCAAGGGTCGCTGGAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7056:5182..5859+

>mRNA_E_fasciculatus_S2_contig7056.15220.1 ID=mRNA_E_fasciculatus_S2_contig7056.15220.1|Name=mRNA_E_fasciculatus_S2_contig7056.15220.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=183bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7056:5182..5859+ (Ectocarpus fasciculatus EfasUO2)
CTACGCCGCCCTTGTGGCAAGGGCCCGAGACGTCATGCAAGCCGGCCCGC
AGCACCAGGCTCTGCTCCCCGCGGCGGAGACGCCCAAGCCGTGGGATACC
GTGGTCGCGGCCACCTACTCCAACCTCAAGAACGTGCCGGTGCTCTTCAG
CCGGAGCGCGACGGGGGGCAAGGGTCGCTGGAT
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