mRNA_E_fasciculatus_S2_contig7056.15219.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7056.15219.1
Unique NamemRNA_E_fasciculatus_S2_contig7056.15219.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7056.15219.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG5_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 1.250e-78
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
Query:    1 SIVDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEWNNLLLRDVIAPIYAALVARARD 366
            SIVDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEWNNLLLRDVIAPIYAALVARARD
Sbjct: 1441 SIVDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEWNNLLLRDVIAPIYAALVARARD 1562          
BLAST of mRNA_E_fasciculatus_S2_contig7056.15219.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.840e-48
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1
Query:    1 SIVDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSN 240
            SIVDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSN
Sbjct:  788 SIVDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSN 867          
BLAST of mRNA_E_fasciculatus_S2_contig7056.15219.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.430e-46
Identity = 77/119 (64.71%), Postives = 90/119 (75.63%), Query Frame = 1
Query:    4 IVDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEWNNLLLRDVIAPIYAALVARA 360
            I DVF+VC  +G G A+  AC P+ R +K +PWGGVAAH++RN  P     G AFCFLPLPV+  LPVHVNG+FELSSNRRDIWFGED+ GEG+RRSEWN LLL DVI P YA L+  A
Sbjct: 2096 IEDVFMVCVQLGAGRARAFACDPQQRDLKFLPWGGVAAHLTRNGKPIERTRGKAFCFLPLPVDAGLPVHVNGYFELSSNRRDIWFGEDLAGEGRRRSEWNRLLLEDVIVPAYALLLDAA 2214          
BLAST of mRNA_E_fasciculatus_S2_contig7056.15219.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAL4_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.330e-43
Identity = 68/119 (57.14%), Postives = 87/119 (73.11%), Query Frame = 1
Query:   10 DVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEWNNLLLRDVIAPIYAALVARARD 366
            D +L+C+A+G G  + MAC P+HR +K +PWG VA H++RN   PP   G+AFCFLPLP  T   VH+NG+FELS+NRRDIWFG DM G G+ R EWN LLLRDVI+P+Y  ++  AR 
Sbjct: 1830 DKYLICSALGSGQCRAMACNPKHRDLKFLPWGSVAVHLTRNEESPPNERGNAFCFLPLPSETGFAVHINGYFELSANRRDIWFGADMTGAGQVRYEWNRLLLRDVISPLYTQILLTARS 1948          
BLAST of mRNA_E_fasciculatus_S2_contig7056.15219.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVU2_9STRA)

HSP 1 Score: 154 bits (388), Expect = 6.490e-41
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 1
Query:   10 DVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEWNNLLLRDVIAPIYAALVARARD 366
            D ++VC  +GG   K+ AC  ++RHMK +PWGGVAA +S+         G+AFCFLPLPV T +PVHVNG+FELS+NRRDIW G DM GEG+ RSEWN LLL DVIAP+YA L++ +++
Sbjct: 1421 DKYIVCVGLGGRKCKEFACDEKYRHMKFLPWGGVAAKMSKT------LRGNAFCFLPLPVETGMPVHVNGYFELSANRRDIWMGSDMTGEGRVRSEWNELLLTDVIAPLYADLLSISQN 1533          
BLAST of mRNA_E_fasciculatus_S2_contig7056.15219.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD61_9STRA)

HSP 1 Score: 150 bits (380), Expect = 7.750e-40
Identity = 65/122 (53.28%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    1 SIVDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEWNNLLLRDVIAPIYAALVARARD 366
            +I D +L+C A+GGG+ +   C   +R +KL+PWGG AA + R+    P   G+AFC LPLP  T+LP+H+NG FELS+NRRDIW+G+DM G+G+ RS+WN LLL DVIAP+Y  L+  AR 
Sbjct:  619 TITDEYLICMALGGGSCRTFVCEENNRDLKLLPWGGCAALLRRDGSDAPLLNGNAFCGLPLPAQTMLPLHLNGMFELSANRRDIWYGDDMSGQGEIRSKWNRLLLSDVIAPLYMDLLLAARQ 740          
BLAST of mRNA_E_fasciculatus_S2_contig7056.15219.1 vs.
Match: UBA (domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NNW2_PHYPR)

HSP 1 Score: 147 bits (371), Expect = 1.250e-38
Identity = 69/118 (58.47%), Postives = 82/118 (69.49%), Query Frame = 1
Query:   10 DVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEWNNLLLRDVIAPIYAALVARAR 363
            + +LVC  IGGG A+ MAC  E+  +KLIPW G+A+ I        P EG AFCFLPLPV   LPVHVNG+FELSSNRRDIW G+DM G+GK RSEWN  LL D +AP Y A +  A+
Sbjct: 1869 EKYLVCNQIGGGKARDMACAAENESLKLIPWVGIASRIDEE-----PMEGRAFCFLPLPVRVGLPVHVNGYFELSSNRRDIWTGDDMSGDGKLRSEWNANLLVDAVAPAYLAFLLEAK 1981          
BLAST of mRNA_E_fasciculatus_S2_contig7056.15219.1 vs.
Match: Uncharacterized (protein n=38 Tax=Phytophthora TaxID=4783 RepID=W2RAY0_PHYPN)

HSP 1 Score: 147 bits (371), Expect = 1.270e-38
Identity = 69/118 (58.47%), Postives = 82/118 (69.49%), Query Frame = 1
Query:   10 DVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEWNNLLLRDVIAPIYAALVARAR 363
            + +LVC  IGGG A+ MAC  E+  +KLIPW G+A+ I        P EG AFCFLPLPV   LPVHVNG+FELSSNRRDIW G+DM G+GK RSEWN  LL D +AP Y A +  A+
Sbjct: 1899 EKYLVCNQIGGGKARDMACAAENESLKLIPWVGIASRIDEE-----PMEGRAFCFLPLPVRVGLPVHVNGYFELSSNRRDIWTGDDMSGDGKLRSEWNANLLVDAVAPAYLAFLLEAK 2011          
BLAST of mRNA_E_fasciculatus_S2_contig7056.15219.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM38_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.730e-38
Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    7 VDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEWNNLLLRDVIAPIYAALVARAR 363
            ++ +LVC  +GGG A+++AC  E+  +KLIPW G+A  I        P EG AFCFLPLPV   LPVH+NG+FELSSNRRDIW G+DM G+GK RS+WN  LLRD +AP Y + +  AR
Sbjct: 1826 LEKYLVCNQLGGGRAREIACAAENESLKLIPWAGIAGRIGVA-----PAEGRAFCFLPLPVKVGLPVHINGYFELSSNRRDIWHGDDMTGDGKLRSDWNESLLRDAVAPAYLSFLLEAR 1939          
BLAST of mRNA_E_fasciculatus_S2_contig7056.15219.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYE3_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.380e-38
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 1
Query:   16 FLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHP-PPPFEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEWNNLLLRDVIAPIYAALVARA 360
            ++V   +GGG  + MAC P+HRH+K IPW   AA ++ N      P  G AFCFLPLPV T LPVHVNG+FELSSNRRDIW+GED+ GEG+RR+ WN  LLR  IAP YA L+  A
Sbjct: 2030 YIVSQLLGGGAVRDMACDPKHRHLKFIPWAATAARLAVNDAVVAEPITGRAFCFLPLPVVTNLPVHVNGYFELSSNRRDIWYGEDLAGEGRRRAIWNEALLRHAIAPCYAKLLVGA 2145          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7056.15219.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.250e-78100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.840e-48100.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
RING-type1.430e-4664.71domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical3.330e-4357.14protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical6.490e-4157.98protein (Fragment) n=1 Tax=Triparma pacifica TaxID... [more]
Hypothetical7.750e-4053.28protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
UBA1.250e-3858.47domain-containing protein n=1 Tax=Phytophthora par... [more]
Uncharacterized1.270e-3858.47protein n=38 Tax=Phytophthora TaxID=4783 RepID=W2R... [more]
Uncharacterized1.730e-3855.46protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Hypothetical4.380e-3858.62protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7056contigE_fasciculatus_S2_contig7056:3561..5214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score261.5
Seed ortholog evalue1.9e-67
Seed eggNOG ortholog2880.D8LJG5
Model size370
KEGG koko:K17592
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
Exons3
EggNOG free text desc.negative regulation of inclusion body assembly
EggNOG OGs28IDA@1,2QQPY@2759
Cds size366
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842365.8688385-CDS-E_fasciculatus_S2_contig7056:3560..36681696842365.8688385-CDS-E_fasciculatus_S2_contig7056:3560..3668Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7056 3561..3668 +
1696842365.8824122-CDS-E_fasciculatus_S2_contig7056:4260..43941696842365.8824122-CDS-E_fasciculatus_S2_contig7056:4260..4394Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7056 4261..4394 +
1696842365.894953-CDS-E_fasciculatus_S2_contig7056:5088..52121696842365.894953-CDS-E_fasciculatus_S2_contig7056:5088..5212Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7056 5089..5212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7056.15219.1prot_E_fasciculatus_S2_contig7056.15219.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7056 3561..5212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7056.15219.1

>prot_E_fasciculatus_S2_contig7056.15219.1 ID=prot_E_fasciculatus_S2_contig7056.15219.1|Name=mRNA_E_fasciculatus_S2_contig7056.15219.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=122bp
SIVDVFLVCAAIGGGNAKKMACLPEHRHMKLIPWGGVAAHISRNSHPPPP
FEGHAFCFLPLPVNTLLPVHVNGFFELSSNRRDIWFGEDMQGEGKRRSEW
NNLLLRDVIAPIYAALVARARD
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mRNA from alignment at E_fasciculatus_S2_contig7056:3561..5214+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7056.15219.1 ID=mRNA_E_fasciculatus_S2_contig7056.15219.1|Name=mRNA_E_fasciculatus_S2_contig7056.15219.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1654bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7056:3561..5214+ (Ectocarpus fasciculatus EfasUO2)
TCGATCGTGGACGTGTTCCTCGTTTGCGCGGCTATCGGGGGCGGCAACGC GAAGAAGATGGCGTGCCTGCCGGAGCACCGGCACATGAAACTTATTCCGT GGGGCGGGGTGAGTTTCTGTCGGGGGGTGGCGGGGGGGGGGGGCGGGGGA AAGAAAGGTGGTAGCGCCGGCAGAGAGGAGAGGGGGTCAGACGTGTTGAA TGAAAGTGTATCGAAGCAGCCTTGAGACGCCGAGTGAGGAACAGCGTCGT TTCTGCTTTGGCACCACCTTGGTAGTACCTTGGAAGTATCTGGCTTTGAA GCAGTTCTGATACAGCACTAAGCAAACACATGGGGTCGAATTCGTCGCCA TTAGCGCTGCGTTGCAGGGTCAATAGTCGTAGAAGTTATACATGCAGTCA CTGCACTGGGGTGCCTATCTATAAAATAGTAGGATGCCTCGGCGTGTTCC ACAATAATTCGTCCTGTTTCGCCTGCGCATGTACACTACTGCTGCAGCGC GTTCTTGCAGTCACGATGGCAACAGAGCGCCTATAACCGCCAGATGTAAG TCTGTAACACATCGAAACGAAAATCAACCGACACACGAGAATGCATTAAC ACACTGGTACCGCGCCGCTCCCCCTCTTCGCGTGGGACGCATGCTTATGT ATGTCCCATTTTTGTCCTTTTTTTTGTTTGTTTTCTTGGTGTTAAAAAAG GTGGCGGCACACATCAGTCGGAACTCGCACCCCCCCCCTCCCTTCGAGGG CCACGCCTTCTGCTTCCTACCGCTGCCGGTTAACACGCTGCTCCCCGTGC ACGTGAACGGCTTCTTCGAGCTGTCCTCCAACAGGTGCGTGTTGTTGGTT ACTTGTTCAATTGTGACAATATATTTCATGTGACTGATGATACACGAACA AACGCACAACTTGCTTTTACCATGACACGCCCGCGCGCACGTGTCTCGAC TCGGGCGCGCCATCAATAGATAGTCCAGGTAACCTGGCTGTTCGAGTTAA ACGTAGGCACAATATATTTGTGTCTGTGGTAGTGGCGACGTACGGCGTCT TGGGGGATAGTAGATTACATGGCCGACAGAGAGATGGCTTGTGTCGATGT GTCTCTTGGGTATTGAACTACAATAGACAAGTTAGACAGCGTGTACGAGA TGTGTTGATTCCTCTTCGTCATTTCGTTGTTGTGGGTGCAGTACGTACGT AAACCGGCCGACAGCGGTCGTGCTGTCTTGCGTCTCCTACCCTCTCGTGC GTGGTAGCTAGTGTAAGTGGTGTGCTGCGCGTAAGGCTCGAGCCGCGTTC TCCTCTCACCGCACTATCCTGTGTGTGATTTCGTTCCTTCATTGTTTTTT CTATATGCCAAAACCAAAGACTGAAAAATAATTGCAATTTAGTTATTTAG TAACCCCCCCATGTTTTTTAGTTCTGCACCATATCGACTGAATATCTGAA GATGAAGCGTAGACTAAATAGATGGACAATAGAGGTGATGGCCCTCTCTT TGTTGTTCTTCTTTGTGTGTGTTCCTAGGAGGGACATCTGGTTCGGAGAG GACATGCAGGGAGAAGGAAAGCGCCGTTCCGAGTGGAACAACCTCCTCCT CCGTGACGTCATCGCGCCCATCTACGCCGCCCTTGTGGCAAGGGCCCGAG ACGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7056:3561..5214+

>mRNA_E_fasciculatus_S2_contig7056.15219.1 ID=mRNA_E_fasciculatus_S2_contig7056.15219.1|Name=mRNA_E_fasciculatus_S2_contig7056.15219.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=366bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7056:3561..5214+ (Ectocarpus fasciculatus EfasUO2)
TCGATCGTGGACGTGTTCCTCGTTTGCGCGGCTATCGGGGGCGGCAACGC
GAAGAAGATGGCGTGCCTGCCGGAGCACCGGCACATGAAACTTATTCCGT
GGGGCGGGGTGGCGGCACACATCAGTCGGAACTCGCACCCCCCCCCTCCC
TTCGAGGGCCACGCCTTCTGCTTCCTACCGCTGCCGGTTAACACGCTGCT
CCCCGTGCACGTGAACGGCTTCTTCGAGCTGTCCTCCAACAGGAGGGACA
TCTGGTTCGGAGAGGACATGCAGGGAGAAGGAAAGCGCCGTTCCGAGTGG
AACAACCTCCTCCTCCGTGACGTCATCGCGCCCATCTACGCCGCCCTTGT
GGCAAGGGCCCGAGAC
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