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Homology
BLAST of mRNA_E_fasciculatus_S2_contig7039.15200.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC8_ECTSI) HSP 1 Score: 845 bits (2182), Expect = 2.830e-306 Identity = 451/522 (86.40%), Postives = 464/522 (88.89%), Query Frame = 1
Query: 1 MSSRRGLWGWDDITRRSCGLPSGPERLRRIGVESAVSSSRFRVRDHVPWAHTSVIHGAGYSAVDWDAGRGVLIAGRKNGGLAVMMTXXXXXXXXXXXXXXDAPLRGLAPRWGGPRKEEERVLLTAASSRWRSQVSDIKFRGGHGGEWACATASLGGGGQPGGVTARFWTGLGDMVDVFSAARLVDAQLHRGSAWCTEWDPLTPARLAIGTSTCSPVMFFDVDQQRLIPVAKLSGDVFSMSFLPAAAPGAGSALVCGLRDGTAVLVDPRQPYRHGTAAAAGTLLAPRADPSSVDHTHILRDGTRCLIKDRSGGLQVADLRFFGPRGGALEVLVPPRGQGTRAPWPAKFALDATETVVATPVAAAXXXXXXXXXXXXXXGGGERFQPQPHAWQRFSSQSVGGLQGGIGGLGGIYDVRNDHGGGYGAEPLPAEGDSVRLLNVSSGEVLNDIQTPWPWVSLARGAGATVDGGEGXXXXXX--REEVRFWGTALAPGRGAAVFEARMTTSEDGYGRDQPSGT-QLNV 1557
M SRRGLWGWDD TR SCGLP+GPERLRRIG+ESAVSSSRFRVRDH PWAHTSVIHGAGYSAVDWDAGRGVLIAGRKNGGLAVMMT DAPLRG APRWGG RK EERVLLTAAS+RWRSQVSDIKFRG H EWACATASLGGGGQPGGVTARFWTG GD+V+VFS ARLVD QLHRGSAWCTEWDPLTPARLAIG STCSPV+FFDVDQQR IP+AKLSGDVFSMSFLPAAAPGAGSALVCGLRDGT VLVD RQPY HGTAAAAGTLLAPRADPSSVDHTHILRDGTRCL+KDRSG LQV DLRF G RGGALEVLVPP GQG RAPWPAKFALDATETVVATPVA XXXXXXXXXXX GGGERF PQPHAW+RF+S S+ GL GIGG IYDVRNDHGGGYGAEP+PAEGDSVRLLNVSSGEVLNDIQTPWPWVSLARGAGATV G EGXXXXXX REEVRFWGTALAPGRGAAVFEARMTTSEDGYGR+Q SGT QLN
Sbjct: 1 MRSRRGLWGWDDRTRSSCGLPAGPERLRRIGLESAVSSSRFRVRDHAPWAHTSVIHGAGYSAVDWDAGRGVLIAGRKNGGLAVMMTGAPMNVGDGGGG--DAPLRGFAPRWGGVRKVEERVLLTAASTRWRSQVSDIKFRG-HAEEWACATASLGGGGQPGGVTARFWTGRGDLVNVFSEARLVDQQLHRGSAWCTEWDPLTPARLAIGPSTCSPVVFFDVDQQRPIPIAKLSGDVFSMSFLPAAAPGAGSALVCGLRDGTVVLVDSRQPYHHGTAAAAGTLLAPRADPSSVDHTHILRDGTRCLVKDRSGCLQVTDLRFSGHRGGALEVLVPPGGQGKRAPWPAKFALDATETVVATPVAXXXXXXXXXXXXXNVVGGGERFPPQPHAWERFTSSSIDGLPNGIGGS--IYDVRNDHGGGYGAEPVPAEGDSVRLLNVSSGEVLNDIQTPWPWVSLARGAGATVGGREGXXXXXXXRREEVRFWGTALAPGRGAAVFEARMTTSEDGYGREQRSGTTQLNA 517
BLAST of mRNA_E_fasciculatus_S2_contig7039.15200.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB6_9PHAE) HSP 1 Score: 843 bits (2179), Expect = 3.630e-302 Identity = 436/524 (83.21%), Postives = 449/524 (85.69%), Query Frame = 1
Query: 1 MSSRRGLWGWDDITRRSCGLPSGPERLRRIGVESAVSSSRFRVRDHVPWAHTSVIHGAGYSAVDWDAGRGVLIAGRKNGGLAVMMTXXXXXXXXXXXXXXDAPLRGLAPRWGGPRKEEERVLLTAASSRWRSQVSDIKFRGGHGGEWACATASLGGGGQPGGVTARFWTGLGDMVDVFSAARLVDAQLHRGSAWCTEWDPLTPARLAIGTSTCSPVMFFDVDQQRLIPVAKLSGDVFSMSFLPAAAPGAGSALVCGLRDGTAVLVDPRQPYRHGTAAAAGTLLAPRADPSSVDHTHILRDGTRCLIKDRSGGLQVADLRFFGPRGGALEVLVPPRGQGTRAPWPAKFALDATETVVATPVAA---AXXXXXXXXXXXXXXGGGERFQPQPHAWQRFSSQSVGGLQGGIGGLGGIYDVRNDHGGGYGAEPLPAEGDSVRLLNVSSGEVLNDIQTPWPWVSLARGAGATVDGGE-GXXXXXXREEVRFWGTALAPGRGAAVFEARMTTSEDGYGRDQPSG-TQLNV 1557
MSSRRGLWGWDD TRRSCGLP+ PERLRRIG+ESAVSSSRFRVRDHVPWAHTSVIHGAGYSAVDWDAGRGVLIAGRKNGGLAVMMT DA LRG APRWGG RKEEERVLLTAAS RWRSQVSDIKFRG HG EWACATASLG GGQPGGVTARFWTG GD+V+VFS RLVD QLHRGSAWCTEWDPLTPARLAIG STCSPV+FFDVDQQR+IPVAKLSGDVFSMSFLPAAAPGAG+ALVCGLRDGT VLVDPRQPYRH T AAAGTLLAPRADPSSVDHTHILRDGTRCL+KDRSG LQV DLRFFG RGGALEVLVPP QG RAPWPAKFALDATETVVATPVAA A GGGERF P PHAWQRFSS ++GGL GIGG +YD RNDHGGGYGAEP+PAEGDSVRLLNVSSGEVLNDIQTPWPWVSLARGAGATVDG E REEVRFWGTALAPGRGAAVFEA MTTSEDGYGR+QPSG TQ NV
Sbjct: 229 MSSRRGLWGWDDRTRRSCGLPARPERLRRIGLESAVSSSRFRVRDHVPWAHTSVIHGAGYSAVDWDAGRGVLIAGRKNGGLAVMMTGAPMNVGGGDGG--DAQLRGFAPRWGGARKEEERVLLTAASRRWRSQVSDIKFRG-HGAEWACATASLGDGGQPGGVTARFWTGRGDLVNVFSEGRLVDQQLHRGSAWCTEWDPLTPARLAIGPSTCSPVVFFDVDQQRVIPVAKLSGDVFSMSFLPAAAPGAGNALVCGLRDGTVVLVDPRQPYRHRTPAAAGTLLAPRADPSSVDHTHILRDGTRCLVKDRSGCLQVTDLRFFGHRGGALEVLVPPGRQGKRAPWPAKFALDATETVVATPVAAEAAAAARADGGTGAATVVGGGERFPPHPHAWQRFSSSTIGGLPNGIGGS--MYDFRNDHGGGYGAEPVPAEGDSVRLLNVSSGEVLNDIQTPWPWVSLARGAGATVDGWEEDGGGCCRREEVRFWGTALAPGRGAAVFEACMTTSEDGYGREQPSGSTQQNV 747
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1560 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | WD40/YVTN repeat-like-containing domain |
| Ec32 ortholog | Ec-00_001760.1 |
| Cds size | 1560 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842364.0583928-CDS-E_fasciculatus_S2_contig7039:3663..4530 | 1696842364.0583928-CDS-E_fasciculatus_S2_contig7039:3663..4530 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7039 3664..4530 - |
| 1696842364.0682895-CDS-E_fasciculatus_S2_contig7039:5027..5159 | 1696842364.0682895-CDS-E_fasciculatus_S2_contig7039:5027..5159 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7039 5028..5159 - |
| 1696842364.0770988-CDS-E_fasciculatus_S2_contig7039:5601..5763 | 1696842364.0770988-CDS-E_fasciculatus_S2_contig7039:5601..5763 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7039 5602..5763 - |
| 1696842364.0857363-CDS-E_fasciculatus_S2_contig7039:5921..6265 | 1696842364.0857363-CDS-E_fasciculatus_S2_contig7039:5921..6265 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7039 5922..6265 - |
| 1696842364.0943213-CDS-E_fasciculatus_S2_contig7039:7099..7154 | 1696842364.0943213-CDS-E_fasciculatus_S2_contig7039:7099..7154 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7039 7100..7154 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7039.15200.1 >prot_E_fasciculatus_S2_contig7039.15200.1 ID=prot_E_fasciculatus_S2_contig7039.15200.1|Name=mRNA_E_fasciculatus_S2_contig7039.15200.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=520bp
MSSRRGLWGWDDITRRSCGLPSGPERLRRIGVESAVSSSRFRVRDHVPWA HTSVIHGAGYSAVDWDAGRGVLIAGRKNGGLAVMMTGGATNGGVGGGGGG DAPLRGLAPRWGGPRKEEERVLLTAASSRWRSQVSDIKFRGGHGGEWACA TASLGGGGQPGGVTARFWTGLGDMVDVFSAARLVDAQLHRGSAWCTEWDP LTPARLAIGTSTCSPVMFFDVDQQRLIPVAKLSGDVFSMSFLPAAAPGAG SALVCGLRDGTAVLVDPRQPYRHGTAAAAGTLLAPRADPSSVDHTHILRD GTRCLIKDRSGGLQVADLRFFGPRGGALEVLVPPRGQGTRAPWPAKFALD ATETVVATPVAAAATAADGGAGAATVVGGGERFQPQPHAWQRFSSQSVGG LQGGIGGLGGIYDVRNDHGGGYGAEPLPAEGDSVRLLNVSSGEVLNDIQT PWPWVSLARGAGATVDGGEGGGGCCCREEVRFWGTALAPGRGAAVFEARM TTSEDGYGRDQPSGTQLNV* back to topmRNA from alignment at E_fasciculatus_S2_contig7039:3664..7154- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig7039.15200.1 ID=mRNA_E_fasciculatus_S2_contig7039.15200.1|Name=mRNA_E_fasciculatus_S2_contig7039.15200.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3491bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7039:3664..7154- (Ectocarpus fasciculatus EfasUO2) ATGAGCAGTCGACGTGGGCTTTGGGGTTGGGACGATATAACCCGGAGATC
GTGCGGTAAGGTCCTAGTGGACGTGAGGAGAATATTTGCTGTGCTGTGCA
GACAGAGGGGCTCCGTCGATGGGGCGGTACAGCAGACGAGTTCAAGCACC
CTCCATCGGCCGCCAAAACGAGATTGCGAATCGTCGCGCGCCACCGTTGC
AACACCTACAACAGAAGACCCCTCCACCCCCCTCATCCCGTGAAAACTGA
GACCGATAGTGCCCCCGCCTAGATTCATATGTGGTTCGAGGGGTAAGTAG
GTTGGCATGATGCTGTCAAACTGCTGTTTGGGCATGGGGGTTGTTTTTGC
GGTAGATCCTGTGAGCTTGTGCGCTTCGGTCCCAGAGTGTGCACCCTATA
GGATGTCCGCTAAACAATGGATAGGGCGCAACGCCCTTTCTTACGAACTA
CTTCGAAGTATTCCACGTGGAACTTGCCCACCTGGAGTATACAAGCAAGT
TGTTCTCCAAGTGTATCACGCACGAAGCGACGTGTTCCCTGTGTGTGGCG
GGCCTGTTGTGTACAAACGGGCAAATATCGAAGCCCCCTGCGGTACTTGA
AGTATAGTTGTGCCTGCTGAAAGTGAAACGTTTTGTTAGCCTGGATGCCC
CACCAACCCATGGCATATCTGGTTTGGCACAGCAAATGCAAAGATGACAG
ATGACGACCAGCTTTGGTTCATCCTTATGAAACGTAGCCCGGGCCGACGA
AACCGCGGCACATATCGTTCGGTTCCAGGCATTGCGTAGGGGTGCGAGGT
CTATGGTCTACCGACCATGGCATCCGTTTACAAGGGCACACACCCCGGAT
ACGCGTCGCCGCCCATCGCCCGGTTTTCCACCCTTGCAGGCTTGCCGTCC
GGTCCGGAACGACTGCGTCGGATAGGGGTTGAGTCGGCAGTCTCCAGCTC
TCGCTTCCGGGTTCGGGACCACGTGCCCTGGGCGCACACCAGTGTCATCC
ACGGCGCCGGTTACTCGGCCGTTGACTGGGATGCCGGGCGGGGGGTCCTC
ATCGCTGGCAGGAAGAACGGCGGGCTTGCAGTGATGATGACGGGGGGGGC
GACGAATGGCGGCGTTGGCGGTGGCGGTGGTGGTGATGCCCCGCTTCGGG
GGCTGGCTCCTCGGTGGGGTGGGCCTCGGAAAGAGGAGGAGCGCGTGCTC
TTGACAGCCGCATCAAGCCGCTGGAGAAGCCAGGTCGGTCGGAAAGGTTT
GGTCTTCGCGCAGCGTAGGGAGAGAGGGTGGCTCGTCCGAGGATCCGATT
TAGCGTTTGGACCGTGGATACATCCAGCTCAGCGGACGACCACCTTTGCG
AAACCACTACCCCTCCCGCGATGCGCGCTCGTTGCCCCAAGGTGTCCGAC
ATCAAGTTCCGTGGTGGGCACGGAGGGGAATGGGCCTGCGCGACAGCGTC
GCTGGGCGGCGGTGGGCAGCCAGGCGGGGTGACTGCAAGGTTTTGGACTG
GACTTGGGGATATGGTTGACGTTTTTTCCGCGGCGCGCCTGGTCGATGCA
CAGGTGGGATGGTTCTATCTGAGTTGGGTCGTGGGGATTAGACCTTGGGC
GAATGCCCCGTTGTTTGTGCAATCGTACTCGGGCCGCTTTTTTGGATGCC
CTTACCCCTCAAGTGGTTATGGCACCCTTTGGTGTGCTTGAGGCCGAGCC
TTTATTGGCCCACACGCCTTCCCGTGCATTTCCCCGTTGGCGAGCGGGTG
GCAATCAATGAACGGATACGTGGGCTCTTGCCTTGCAAATGGCCTTCATG
GGTGCCGCCATTCAGCATCTCAGACACCGGGGCTCGTTGCGGATTGACTG
AACAAATGGGCCGGGGAAACCCCAAGGCGGTGCATGCCACCGTTAGACTG
TCTGTCTGCCCCAAAACTGACTGACCCCCGCCGAGTTTCCTGAACGATCA
ACATGCTGCTGTGACGTGTCTCGTGTTTGTTTCATTCGAGATCAGCTGCA
CCGGGGCTCCGCCTGGTGCACGGAGTGGGACCCCTTAACGCCGGCAAGAC
TGGCCATCGGGACCAGCACCTGCAGCCCGGTTATGTTCTTCGACGTCGAC
CAGCAGCGACTGATACCGGTAGCCAAGGTAAGCAACAAATTCGCCACAGC
CTGTGGTAGACGGGGAGAGTGTCCTAGAGCCGAGTCTGACCAACAAGTCC
TAACTGGAACACGACTTGCGCTAGAGAGGAGAGTCGGCTACAAGCTTTGC
GCCCTCCACCTGGGGCTGTTACTGCTGCGCGCGCCGGGCGTGGTGTTTGT
GACGTGTCATTTCACGGTATCCCCGCATTTGAGGGTTAAGCTATCGCCTG
TCCCGTAGGGTGTTGACCTCTCTCAACACTCCCGGCGTTCCACAAATGCC
TTCCAATAACCTCTATTCGGTTCATTTACGTCCGTGGATCCCCGAATTTA
ACCGCCCCCCGCCTTGGTCAATGGCCTAACGAGTAAGGTATGCAAAACAC
AAGAGTAAGCCCGCCCTCCCCCCGCCTTGTACATCCACGCATGTCACGGT
GCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCGCGCGTTA
CACGCACGGACGGGGGTAAATTAGTTGTCGGGCGACGTCTTCTCCATGTC
CTTCCTCCCTGCCGCCGCCCCGGGCGCCGGCAGCGCGCTCGTCTGCGGCC
TGCGGGACGGCACCGCTGTCCTCGTCGACCCCCGACAGCCGTATCGCCAC
GGGACCGCGGCCGCCGCCGGGACCCTGCTGGCCCCCCGAGCGGACCCCTC
CTCGGTGGACCACACGCACATCCTGCGCGACGGGACGCGGTGCCTCATCA
AGGACCGCTCGGGCGGGCTGCAGGTCGCTGATCTACGCTTCTTCGGGCCT
CGGGGGGGCGCACTGGAGGTCCTGGTTCCGCCCAGGGGGCAAGGGACGCG
GGCGCCCTGGCCGGCGAAGTTCGCCTTGGACGCAACGGAGACCGTAGTCG
CGACGCCGGTAGCGGCGGCAGCGACGGCGGCGGACGGCGGGGCCGGCGCT
GCTACCGTAGTCGGCGGCGGTGAGCGCTTCCAGCCTCAACCCCATGCTTG
GCAAAGGTTTTCCTCTCAGAGTGTTGGCGGCCTGCAAGGCGGTATCGGCG
GCCTTGGGGGTATCTACGACGTCAGGAACGACCACGGCGGCGGGTACGGC
GCCGAGCCCTTGCCTGCGGAGGGGGACAGCGTGCGACTGCTCAACGTGTC
TTCGGGGGAAGTGCTCAACGACATACAGACTCCCTGGCCGTGGGTGTCAC
TCGCGAGGGGAGCAGGAGCAACGGTAGATGGCGGCGAGGGGGGCGGCGGC
TGCTGTTGCCGCGAAGAGGTGCGGTTTTGGGGGACAGCGTTGGCACCTGG
GCGCGGAGCGGCTGTATTCGAGGCTCGAATGACCACGTCTGAGGATGGAT
ACGGGCGAGATCAACCAAGTGGAACTCAACTAAATGTCTAG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig7039:3664..7154- >mRNA_E_fasciculatus_S2_contig7039.15200.1 ID=mRNA_E_fasciculatus_S2_contig7039.15200.1|Name=mRNA_E_fasciculatus_S2_contig7039.15200.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1560bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7039:3664..7154- (Ectocarpus fasciculatus EfasUO2) ATGAGCAGTCGACGTGGGCTTTGGGGTTGGGACGATATAACCCGGAGATC GTGCGGCTTGCCGTCCGGTCCGGAACGACTGCGTCGGATAGGGGTTGAGT CGGCAGTCTCCAGCTCTCGCTTCCGGGTTCGGGACCACGTGCCCTGGGCG CACACCAGTGTCATCCACGGCGCCGGTTACTCGGCCGTTGACTGGGATGC CGGGCGGGGGGTCCTCATCGCTGGCAGGAAGAACGGCGGGCTTGCAGTGA TGATGACGGGGGGGGCGACGAATGGCGGCGTTGGCGGTGGCGGTGGTGGT GATGCCCCGCTTCGGGGGCTGGCTCCTCGGTGGGGTGGGCCTCGGAAAGA GGAGGAGCGCGTGCTCTTGACAGCCGCATCAAGCCGCTGGAGAAGCCAGG TGTCCGACATCAAGTTCCGTGGTGGGCACGGAGGGGAATGGGCCTGCGCG ACAGCGTCGCTGGGCGGCGGTGGGCAGCCAGGCGGGGTGACTGCAAGGTT TTGGACTGGACTTGGGGATATGGTTGACGTTTTTTCCGCGGCGCGCCTGG TCGATGCACAGCTGCACCGGGGCTCCGCCTGGTGCACGGAGTGGGACCCC TTAACGCCGGCAAGACTGGCCATCGGGACCAGCACCTGCAGCCCGGTTAT GTTCTTCGACGTCGACCAGCAGCGACTGATACCGGTAGCCAAGTTGTCGG GCGACGTCTTCTCCATGTCCTTCCTCCCTGCCGCCGCCCCGGGCGCCGGC AGCGCGCTCGTCTGCGGCCTGCGGGACGGCACCGCTGTCCTCGTCGACCC CCGACAGCCGTATCGCCACGGGACCGCGGCCGCCGCCGGGACCCTGCTGG CCCCCCGAGCGGACCCCTCCTCGGTGGACCACACGCACATCCTGCGCGAC GGGACGCGGTGCCTCATCAAGGACCGCTCGGGCGGGCTGCAGGTCGCTGA TCTACGCTTCTTCGGGCCTCGGGGGGGCGCACTGGAGGTCCTGGTTCCGC CCAGGGGGCAAGGGACGCGGGCGCCCTGGCCGGCGAAGTTCGCCTTGGAC GCAACGGAGACCGTAGTCGCGACGCCGGTAGCGGCGGCAGCGACGGCGGC GGACGGCGGGGCCGGCGCTGCTACCGTAGTCGGCGGCGGTGAGCGCTTCC AGCCTCAACCCCATGCTTGGCAAAGGTTTTCCTCTCAGAGTGTTGGCGGC CTGCAAGGCGGTATCGGCGGCCTTGGGGGTATCTACGACGTCAGGAACGA CCACGGCGGCGGGTACGGCGCCGAGCCCTTGCCTGCGGAGGGGGACAGCG TGCGACTGCTCAACGTGTCTTCGGGGGAAGTGCTCAACGACATACAGACT CCCTGGCCGTGGGTGTCACTCGCGAGGGGAGCAGGAGCAACGGTAGATGG CGGCGAGGGGGGCGGCGGCTGCTGTTGCCGCGAAGAGGTGCGGTTTTGGG GGACAGCGTTGGCACCTGGGCGCGGAGCGGCTGTATTCGAGGCTCGAATG ACCACGTCTGAGGATGGATACGGGCGAGATCAACCAAGTGGAACTCAACT AAATGTCTAG back to top
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