mRNA_E_fasciculatus_S2_contig702.15179.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig702.15179.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G619_ECTSI) HSP 1 Score: 1129 bits (2919), Expect = 0.000e+0 Identity = 908/1609 (56.43%), Postives = 949/1609 (58.98%), Query Frame = 1
Query: 85 MPCRISGSSSNNSGSSGGRREHFKSQLESQVQAAQHGHRGLESALQLMCERLLDLEDCWQLAREEQQKTENKFLELQQECRDRQNHLSTLNDSLRADLCLLESRVETLAKAQVPLVEDDAIPITPVAAPANDAAVGLVATTAVVGTSGDVNGVDHEETMAAMRQDLCALRRKVEIMAANVLGESEGASTETASGEEGGREGGETLLYNRSSDDDSAGKSGTDAEQVADDIADVETRRAPPVTATRMMIERRRETN*GNRNSTDKKTAVRVREY*NDARRGTTGPKSDFIALS*SRRSGDRCVPPENEHRPIEGILAH*YTVCRVERSVLLKSSTEICYTTVQRVSRGRHNT*NRFKGESKIRIGLSSNQGCKLVLLEEMQHARRNCCRAIARRNERRACVFFLALHERTPVVGGVLMRIYRSLPTVDTNNETRISGEPQQLDQPNCQMMAERKVSHSETIVTRVERLEKALGVNVYTTGSGRLDTLARDVRLSLAMIVEYQARAASDNLSAPLCLFPAREGDLSMISAAVMPVQPRSGSRRPSGDAHDGRRGSRETRRSWSSISMRTSDGDSGDSSGXXXXXXXXXTVWXXXXXXDVGRLWLAEDAGYLCVDLLLERTLEELAEGLAFAASHVEKGRSRSLAASRG-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLPTERDGHQQEESGRGSTTTLKREIERMQDRCARLGALVARLRVVQQQQRDERGKGEGAGAWVQDGTGRRPSVVFAAEEQSEERGEVNDDAQRPTPESAVGVIAKEVLRLSCALAGDLQYLLSRPAYCRVLDAFAFTPGRKCLCGREFDTGGTAATIPLAPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGGPRQQPRPQRQGQTHST-QGATEEKTHNDATGGXXXXXXXDRGGKGQQQRPPPMSWRMPTFMSVPLTTQNGGGRPSGEGIFVVAGEGALEKASGFRVRSTLYQASGCASRREQGQCCFVLSLGHLSSFLASARSRAAHRAVSSLTKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARNEGSLLLVEFHEQLANAMRTERDRLXXXXXXXXXXXXERVGQLLETQARKKKNYSLLGHLKSLLDGKAGQEDLASITRAMGDVEETLTVVRQSIPGEKALQELQEALARKADKAYTKRKMALLVSRVSALLQEESEEPSMAKKCLSCDRAFNKLSFKELELAHQQLPEVLESAEDAAMRAQQXXXXMAAGGAPGGRGLEGEGHATGDGPRETVADRSGSPPPGGRRDQANKRPGSAPSARSSTLEPRTFGNNRPSSAAPQRLVGGGGTSAVGGGFRPGSGGARSRTARGVGAHANSNSRLLPPATGGPQPTTRHSPLFAPAALSATYGLLSDGARKAVESEAFRAERVSAREPSPAPDHIRYGGMTQAPLVRQLFSGLGGGVGGVGGLDTPTSVDGAHGRAAVGNRIFKGGTRGRXXXXXXXRTGAGRGKGVEHLRVSGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVIAVTVPPVQAVGAAGFVPETLIRGSGXXXXXXNNSKRGSKPYGA 4905
MPCRIS SSNNS + G RREH K+QLESQVQAAQHGHRGLESAL LMCERLLDLEDCWQ AR E++KTE KFLELQQECRDRQNHLSTLND++R DLCLL+SRV+TLA+AQVP EDDAIPITPVAAP NDAAVGLVATTAVV TSGD NG+DHEETMAAMRQ+L ALRRKVEIMAANVLGESEG STETA GEEGGRE LL + SSDDDSAGKSGTDAEQV DIADV+ E N ++D +T D RG SGD+ P+ G GES I L +RT +R++R+ QMMAERKVS SETIVTRVERLEKALGVNVYTTGSGRLDTLARDVRLSLAMIVEYQARAA RS+SLAA RG SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSS+PTE DGHQQEES RGS T+LK+EI RMQDRC RLGALVARL V QQ D RGKG+ A AWVQDGTGRRPSVVFAAEEQSEERG+VN DAQRPTPE+A G IA EVLRLSCALAGDLQYLLSRPAYCRVLDAFAFTPGRKCLCGR+FDT GTAA IP+ PAA Q G PRQQP+ QRQGQ + +GA EE T++ ATGG DR GKGQ Q+PPPM MPTFMSVPLT QNGG RPSGEG FVVAGEGALEKASGFRVRSTLYQ CFVLSLGHLSSFLASARSRAAHRAVSSLTK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXSARNEGSLLLVEFHEQLA AMR ERDR XXXXXXXXXXXX RVGQLLE+Q LGHLKSLLDGKAGQEDLASITRAMGDVEETLTVVRQSIPGEKALQELQEALARKADKAYTKRKMALLVSRVSALLQEESEEPSMAKKCLSCDRAFNKLSFKELELA Q AVESEAFRAERVSAREPSPAPDHIRYGGMTQAPLVRQLFSGLGGGVGGVGGLDTPTSVDGAH R AVGNRIFKGG RGR XXXXRTGAGRGKG EHLRVSGEGXXXXXXXX NVIAVTVPP+QAVGAAGFVPETLIRGSG N+SKRGSKPYGA
Sbjct: 1 MPCRIS-DSSNNSCNGGNRREHLKAQLESQVQAAQHGHRGLESALHLMCERLLDLEDCWQQARYEKKKTEEKFLELQQECRDRQNHLSTLNDNVREDLCLLQSRVDTLAEAQVP--EDDAIPITPVAAPVNDAAVGLVATTAVVATSGDGNGMDHEETMAAMRQELHALRRKVEIMAANVLGESEGVSTETAPGEEGGREREGALLQSNSSDDDSAGKSGTDAEQVPYDIADVDD-----------------EEN----TTSDSQT---------DNERGA---------------SGDQGGKPQXXXXXXXG-------------------------------------------GESSRII-----------------------------------------LKKRTARNHWAQVRLHRAFLVKKIRR----------------QMMAERKVSKSETIVTRVERLEKALGVNVYTTGSGRLDTLARDVRLSLAMIVEYQARAA-----------------------------------------------------------------------------------------------------------------------------------RSQSLAACRGTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSVPTEHDGHQQEESERGSATSLKKEIGRMQDRCTRLGALVARLGVAQQHHLDGRGKGDRAEAWVQDGTGRRPSVVFAAEEQSEERGDVNRDAQRPTPEAAAGAIASEVLRLSCALAGDLQYLLSRPAYCRVLDAFAFTPGRKCLCGRDFDTAGTAAAIPVVPAAAPASARGKNGDEHVGRGSGGDNGRDRD----QGGEPRQQPQWQRQGQAQANDRGAAEEHTNSGATGGESDAGTGDRAGKGQHQKPPPMLRHMPTFMSVPLTAQNGGARPSGEGFFVVAGEGALEKASGFRVRSTLYQ-------------CFVLSLGHLSSFLASARSRAAHRAVSSLTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAXXXXXXXXXSARNEGSLLLVEFHEQLAKAMRAERDRXXXXXXXXXXXXXXRVGQLLESQ---------LGHLKSLLDGKAGQEDLASITRAMGDVEETLTVVRQSIPGEKALQELQEALARKADKAYTKRKMALLVSRVSALLQEESEEPSMAKKCLSCDRAFNKLSFKELELAQQ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVESEAFRAERVSAREPSPAPDHIRYGGMTQAPLVRQLFSGLGGGVGGVGGLDTPTSVDGAHARGAVGNRIFKGGRRGRGGAXXXXRTGAGRGKGGEHLRVSGEGXXXXXXXXDERTPAAGAGDNHEGFASTLEHHRR-NVIAVTVPPIQAVGAAGFVPETLIRGSGGSGVEVNSSKRGSKPYGA 1131 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig702.15179.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig702.15179.1 >prot_E_fasciculatus_S2_contig702.15179.1 ID=prot_E_fasciculatus_S2_contig702.15179.1|Name=mRNA_E_fasciculatus_S2_contig702.15179.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1161bp MMAERKVSHSETIVTRVERLEKALGVNVYTTGSGRLDTLARDVRLSLAMIback to top mRNA from alignment at E_fasciculatus_S2_contig702:171..11408+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig702.15179.1 ID=mRNA_E_fasciculatus_S2_contig702.15179.1|Name=mRNA_E_fasciculatus_S2_contig702.15179.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=11238bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig702:171..11408+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig702:171..11408+ >mRNA_E_fasciculatus_S2_contig702.15179.1 ID=mRNA_E_fasciculatus_S2_contig702.15179.1|Name=mRNA_E_fasciculatus_S2_contig702.15179.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3483bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig702:171..11408+ (Ectocarpus fasciculatus EfasUO2)back to top |