mRNA_E_fasciculatus_S2_contig7019.15178.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7019.15178.1
Unique NamemRNA_E_fasciculatus_S2_contig7019.15178.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7019.15178.1 vs.
Match: Methyltransf_25 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK1_ECTSI)

HSP 1 Score: 440 bits (1132), Expect = 1.500e-142
Identity = 234/274 (85.40%), Postives = 241/274 (87.96%), Query Frame = 1 
Query:    1 EWKKEEERLVKELSAGAKGDDGTRLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEKLLGLRFTISPNSFFQVNTRGAEALYGVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANDINNCEFVCGKAEAVVGGQIAKACKQHKESLAAPTATAPTIAPATTTAGAGLEGST---------TPELKFAAIVDPPRSGVHAKCLRSIRSTKAIKRLVYVSCNPTKSLAADALILCTPVSKSTTGLPFRPVK 795
            EWKKEEERLVKELSAGA+G++GT+LVSLWVQEYAGLSSPDETSPMRLLWGKERLEE+LLGLRFTISPNSFFQVNT+GAEALY VVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALAN I+NCEFVCGKAEAVV GQIA A KQHK SL AP A            GAG EGST         T ELKFAAIVDPPRSGVHAKCLRSIR TKAIKRLVYVSCNPTKSLAADA ILCTPVSKSTTGLPFRPVK
Sbjct:  392 EWKKEEERLVKELSAGAQGEEGTKLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANGIDNCEFVCGKAEAVVAGQIANAFKQHKASLGAPAA------------GAGEEGSTASPAAAPAATGELKFAAIVDPPRSGVHAKCLRSIRGTKAIKRLVYVSCNPTKSLAADATILCTPVSKSTTGLPFRPVK 653
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BLAST of mRNA_E_fasciculatus_S2_contig7019.15178.1 vs.
Match: RRM (domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A329T2V8_9STRA)

HSP 1 Score: 236 bits (602), Expect = 3.530e-64
Identity = 127/288 (44.10%), Postives = 178/288 (61.81%), Query Frame = 1 
Query:   13 EEERLVKELSAGAKGDDGT--RLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEKLLGLRFTISPNSFFQVNTRGAEALYGVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANDINNCEFVCGKAEAVVGGQIAKACKQHKESLAAPTATAPTIAPATTTAGAGLEGSTTPELKFAAIVDPPRSGVHAKCLRSIRSTKAIKRLVYVSCNPTKSLAADALILCTPVSKSTTGLPFRPVKAIPVDMFPHTPHMELVMVFERIEYE 870
            EE   VK+L      D+    ++ S++VQEY GLS+P +  P+  ++GK +LEE LLG+RF++SPN+FFQVNTRGAE LY +V +     +  ++ DVCCG GTIGICA+   G  +V G +IC PA +DA  NA+ ND+ N  FV  KAE V+ G + K   + ++ L                             +  AIVDPPR+G+H + LR++R+   ++R+VYVSCNPT SL  DA+ LC P +KS  G  F PV A+PVDMFPHTPH E+++VF+R++ E
Sbjct:  557 EERAAVKDLVVKRLTDESNSFKITSIYVQEYDGLSAPSDNDPVEHVFGKTKLEEHLLGMRFSVSPNAFFQVNTRGAEKLYSLVKQYANADEHTLLYDVCCGTGTIGICASK--GVGKVVGIEICKPATDDAEVNAVLNDVKNVSFVNSKAEDVMKGLLQKKRDESEKHLN----------------------------RVVAIVDPPRAGLHHQVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSIQGQAFEPVHAVPVDMFPHTPHCEMIIVFDRVKTE 814
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BLAST of mRNA_E_fasciculatus_S2_contig7019.15178.1 vs.
Match: 23S (rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y815_9STRA)

HSP 1 Score: 235 bits (600), Expect = 5.850e-64
Identity = 126/288 (43.75%), Postives = 179/288 (62.15%), Query Frame = 1 
Query:   13 EEERLVKELSAGAKGDDGT--RLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEKLLGLRFTISPNSFFQVNTRGAEALYGVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANDINNCEFVCGKAEAVVGGQIAKACKQHKESLAAPTATAPTIAPATTTAGAGLEGSTTPELKFAAIVDPPRSGVHAKCLRSIRSTKAIKRLVYVSCNPTKSLAADALILCTPVSKSTTGLPFRPVKAIPVDMFPHTPHMELVMVFERIEYE 870
            EE   VK+L      D+G   ++ S+++QEY GLS+P +  P+  ++GK +LEE LLG+RF++SPN+FFQVNTRGAE LY +V +     +  ++ DVCCG GTIGICA+   G  +V G +IC PA +DA  NA+ ND+ N  FV  KAE V+   + K   ++++ L                             +  AIVDPPR+G+H + LR++R+   ++R+VYVSCNPT SL  DA+ LC P +KS  G  F PV A+PVDMFPHTPH E+++VF+R++ E
Sbjct:  547 EERAAVKDLVVKRLTDEGNSFKITSIYMQEYEGLSAPSDNDPVEHVFGKTKLEEHLLGMRFSVSPNAFFQVNTRGAEKLYSLVKQYANADEHTLLYDVCCGTGTIGICASK--GVGKVVGIEICKPATDDAEVNAVLNDVKNVTFVNSKAEDVMKDLLRKKRDENEKHLN----------------------------RVVAIVDPPRAGLHHQVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSIQGQAFEPVHAVPVDMFPHTPHCEMIIVFDRVKAE 804
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BLAST of mRNA_E_fasciculatus_S2_contig7019.15178.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z4X0_PHYSP)

HSP 1 Score: 232 bits (592), Expect = 8.510e-63
Identity = 122/288 (42.36%), Postives = 178/288 (61.81%), Query Frame = 1 
Query:   13 EEERLVKELSAGAKGDDGT--RLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEKLLGLRFTISPNSFFQVNTRGAEALYGVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANDINNCEFVCGKAEAVVGGQIAKACKQHKESLAAPTATAPTIAPATTTAGAGLEGSTTPELKFAAIVDPPRSGVHAKCLRSIRSTKAIKRLVYVSCNPTKSLAADALILCTPVSKSTTGLPFRPVKAIPVDMFPHTPHMELVMVFERIEYE 870
            EE   +K+L      D+    ++ S ++QEY GLS+P +  P+  ++GK +LEE LLG+RF +SPN+FFQVNTRGAE LY +V ++ +  +  ++ DVCCG GTIGICA+   G  +V G +IC PA +DA  NA+ ND+ N  F+  KAE V+   + +  ++ ++ L                             +  AIVDPPR+G+H   LR++R+   ++R+VYVSCNPT SL  DA++LC P +K   G  F+PV A+PVDMFPHTPH E+++VFER++ E
Sbjct:  555 EERAALKDLLVERLTDENNSFKITSFYIQEYEGLSAPSDNDPVEHVFGKTKLEEHLLGMRFDVSPNAFFQVNTRGAEELYSLVKQHADADEHTLLYDVCCGTGTIGICASK--GVAKVVGIEICKPATDDAEVNAVLNDVKNVSFINSKAEDVMKDLLRRKREESEKHLN----------------------------RVVAIVDPPRAGLHHNVLRALRACPPVQRIVYVSCNPTNSLVRDAVMLCGPSTKGMQGEAFQPVHAVPVDMFPHTPHCEMIIVFERVKTE 812
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BLAST of mRNA_E_fasciculatus_S2_contig7019.15178.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TWB0_9STRA)

HSP 1 Score: 230 bits (586), Expect = 7.860e-62
Identity = 121/288 (42.01%), Postives = 179/288 (62.15%), Query Frame = 1 
Query:   13 EEERLVKELSAGAKGDDGT--RLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEKLLGLRFTISPNSFFQVNTRGAEALYGVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANDINNCEFVCGKAEAVVGGQIAKACKQHKESLAAPTATAPTIAPATTTAGAGLEGSTTPELKFAAIVDPPRSGVHAKCLRSIRSTKAIKRLVYVSCNPTKSLAADALILCTPVSKSTTGLPFRPVKAIPVDMFPHTPHMELVMVFERIEYE 870
            EE   VK+L      D+    ++ S+++QEY GLS+P +  P+  ++GK ++EE LLG+RF +SPN+FFQVNTRGAE LY +V +++   +  ++ DVCCG GTIGICA+   G  +V G +IC PA +DA  NA+ N++ N  F+  KAE V+   + K  ++ ++ L                             +  AIVDPPR+G+H + LR++R+   ++R+VYVSCNPT SL  DA+ LC P +K+  G  F PV A+PVDMFPHTPH E+++VF+R++ E
Sbjct:  579 EERAAVKDLVVKRLTDESNPFKITSIFMQEYEGLSAPSDNDPVEHVFGKTKIEEHLLGMRFDVSPNAFFQVNTRGAEKLYSLVKQHVNADEHTLLYDVCCGTGTIGICASK--GVGKVVGIEICKPATDDAEVNAVLNNVKNVSFINSKAEDVMKDLLRKKREESEKHLN----------------------------RVVAIVDPPRAGLHHQVLRALRACPPVQRIVYVSCNPTNSLVRDAVTLCGPSTKALQGQAFEPVHAVPVDMFPHTPHCEMIIVFDRVKAE 836
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BLAST of mRNA_E_fasciculatus_S2_contig7019.15178.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEE9_PHYRM)

HSP 1 Score: 229 bits (585), Expect = 9.200e-62
Identity = 122/285 (42.81%), Postives = 176/285 (61.75%), Query Frame = 1 
Query:   13 EEERLVKELSAGAKGDDGT--RLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEKLLGLRFTISPNSFFQVNTRGAEALYGVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANDINNCEFVCGKAEAVVGGQIAKACKQHKESLAAPTATAPTIAPATTTAGAGLEGSTTPELKFAAIVDPPRSGVHAKCLRSIRSTKAIKRLVYVSCNPTKSLAADALILCTPVSKSTTGLPFRPVKAIPVDMFPHTPHMELVMVFERI 861
            EE   +K+L      D+    ++ S+++QEY GLS+P +  P+  ++GK +L+E LLG+RF++SPN+FFQVNTRGAE LY +V +     +  ++ DVCCG GTIGICA+   GA +V G +IC PA +DA  NA+ ND+ N  FV  KAE V+   + K  ++ +  L                             +  AIVDPPR+G+H + LR++R+   ++R+VYVSCNPT SL  DA+ LC P +KS  G  F PV ++PVDMFPHTPH E+++VF+R+
Sbjct:  565 EERSAIKDLVVKRLTDESNSFKVTSIYMQEYEGLSAPSDNDPVEHVFGKTKLDEHLLGMRFSVSPNAFFQVNTRGAEKLYSLVKQYANADEHTLLYDVCCGTGTIGICASK--GAGKVVGIEICKPATDDAEVNAVLNDVKNVTFVNSKAEDVMKDLLYKKREESETHLN----------------------------RVVAIVDPPRAGLHHQVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSLQGQAFEPVHSVPVDMFPHTPHCEMIIVFDRV 819
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BLAST of mRNA_E_fasciculatus_S2_contig7019.15178.1 vs.
Match: tRNA ((Uracil-5-)-methyltransferase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NAM0_PHYIT)

HSP 1 Score: 229 bits (584), Expect = 1.140e-61
Identity = 122/285 (42.81%), Postives = 174/285 (61.05%), Query Frame = 1 
Query:   13 EEERLVKELSAGAKGDDGT--RLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEKLLGLRFTISPNSFFQVNTRGAEALYGVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANDINNCEFVCGKAEAVVGGQIAKACKQHKESLAAPTATAPTIAPATTTAGAGLEGSTTPELKFAAIVDPPRSGVHAKCLRSIRSTKAIKRLVYVSCNPTKSLAADALILCTPVSKSTTGLPFRPVKAIPVDMFPHTPHMELVMVFERI 861
            EE   VK+L      D+    ++ S+++QEY GLS+P +  P+  ++GK +LEE LLG+RF++SPN+FFQVNT GAE LY +V +     +  ++ DVCCG GTIGICA+   G  +V G +IC PA +DA+ NA+ N++ N  FV  KAE V+   + K   + ++ L                             +  AIVDPPR+G+H   LR++R+   ++R+VYVSCNPT SL  DA+ LC P +KS  G  F PV A+PVDMFPHTPH E+++VF+R+
Sbjct:  559 EERAAVKDLVVKRLTDESNAFKITSVFIQEYEGLSAPSDNDPVEHVYGKTKLEEHLLGMRFSVSPNAFFQVNTHGAEKLYSLVKQYANADEHTLLYDVCCGTGTIGICASE--GVGKVVGIEICKPATDDAQVNAILNNVQNVSFVNSKAEDVMKSLLQKKRDESEKHLN----------------------------RVVAIVDPPRAGLHHNVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSLQGQAFEPVHAVPVDMFPHTPHCEMIIVFDRV 813
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7019.15178.1 vs.
Match: 23s (rrna (Uracil-5-)-methyltransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWZ6_PLAHL)

HSP 1 Score: 226 bits (577), Expect = 1.060e-60
Identity = 124/288 (43.06%), Postives = 175/288 (60.76%), Query Frame = 1 
Query:   13 EEERLVKELSAGAKGDDGT--RLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEKLLGLRFTISPNSFFQVNTRGAEALYGVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANDINNCEFVCGKAEAVVGGQIAKACKQHKESLAAPTATAPTIAPATTTAGAGLEGSTTPELKFAAIVDPPRSGVHAKCLRSIRSTKAIKRLVYVSCNPTKSLAADALILCTPVSKSTTGLPFRPVKAIPVDMFPHTPHMELVMVFERIEYE 870
            EE   VKEL      D+    R+ S++VQEY GLS+P +   +  ++GK +LEE LLG+RF+ISPN+FFQVNT GAE LY +V ++    +  ++ DVCCG GTIGIC +   G  ++ G + C PA +DA  NA  N++ N  FV  KAE V+   + +   ++K+ L                             +  AIVDPPR+G+H + LR++R+   ++R+VYVSCNPT SL  DA+ LC P +KS  G  F+PV A+PVDMFPHTPH E+++VF+R+E E
Sbjct:  556 EERAAVKELIVKRLTDEENSFRITSIYVQEYEGLSAPSDNDSVEHVFGKTKLEEHLLGMRFSISPNAFFQVNTLGAEKLYTLVKQHANANEHTMLYDVCCGTGTIGICLSQ--GVGEIVGIETCKPATDDAEVNAELNNVKNVSFVNSKAEMVMKNLLQQKRGENKQQLD----------------------------RVVAIVDPPRAGLHHQVLRALRACAPVERIVYVSCNPTNSLIRDAVTLCGPNTKSIQGQAFKPVYAVPVDMFPHTPHCEMIIVFDRVEAE 813
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7019.15178.1 vs.
Match: Uncharacterized (protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GGL2_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.510e-60
Identity = 123/285 (43.16%), Postives = 173/285 (60.70%), Query Frame = 1 
Query:   13 EEERLVKELSAGAKGDDGT--RLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEKLLGLRFTISPNSFFQVNTRGAEALYGVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANDINNCEFVCGKAEAVVGGQIAKACKQHKESLAAPTATAPTIAPATTTAGAGLEGSTTPELKFAAIVDPPRSGVHAKCLRSIRSTKAIKRLVYVSCNPTKSLAADALILCTPVSKSTTGLPFRPVKAIPVDMFPHTPHMELVMVFERI 861
            EE   VK+L      D     ++ S+++QEY GLS+P +  P+  ++G  +LEE LLG+RF++SPN+FFQVNTRGAE LY +V  + +  +  ++ DVCCG GTIGICA+   G  +V G +IC PA +DA  NA  N++ N  FV  KAE V+   + K  + H++ L                             +  AIVDPPR+G+H + LR++RS   ++R+VYVSCNPT SL  DA+ LC P +K+  G  F PV A PVDMFPHTPH E+++VF+R+
Sbjct:  551 EERDTVKDLVVKRLTDANCSFKVTSIYMQEYDGLSAPSDNDPVTHVYGGTKLEEHLLGMRFSVSPNAFFQVNTRGAEELYSLVKHHAKADEHTLLYDVCCGTGTIGICASK--GVGKVVGIEICKPATDDAAVNAKLNNVENVTFVNSKAEDVMKDLLRKKREDHEKHLN----------------------------RVVAIVDPPRAGLHHQVLRALRSCPPVERIVYVSCNPTNSLVRDAVTLCGPSTKALQGQAFEPVHAAPVDMFPHTPHCEMIIVFDRV 805
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7019.15178.1 vs.
Match: RRM (domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7XP75_9STRA)

HSP 1 Score: 225 bits (573), Expect = 4.320e-60
Identity = 122/288 (42.36%), Postives = 175/288 (60.76%), Query Frame = 1 
Query:   13 EEERLVKELSAGAKGDD--GTRLVSLWVQEYAGLSSPDETSPMRLLWGKERLEEKLLGLRFTISPNSFFQVNTRGAEALYGVVIENLELGDDAVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANDINNCEFVCGKAEAVVGGQIAKACKQHKESLAAPTATAPTIAPATTTAGAGLEGSTTPELKFAAIVDPPRSGVHAKCLRSIRSTKAIKRLVYVSCNPTKSLAADALILCTPVSKSTTGLPFRPVKAIPVDMFPHTPHMELVMVFERIEYE 870
            EE   V++L      DD    ++ S+++QEY GLS+P +  P+  ++GK +LEE LLG+RF +SPN+FFQVNT GAE LY +V +     +  ++ DVCCG GTIGICA+   G  +V G +IC PA +DA  NA+ N + N  F+  KAE V+   + K  ++ ++ L                             +  AIVDPPR+G+H + LR++R+   ++R+VYVSCNPT SL  DA+ LC P +KS  G  F PV A+PVDMFPHTPH E+++VF+R++ E
Sbjct:  568 EERAAVRDLIVKRLTDDCNSFKVTSIYMQEYNGLSTPSDNDPVEHVFGKTKLEEHLLGMRFLVSPNAFFQVNTGGAEKLYSLVKKFANADEHTLLYDVCCGTGTIGICASK--GVGKVVGIEICKPATDDAEANAILNGVKNVSFINSKAEDVMKDLLHKKREESEKHLN----------------------------RVVAIVDPPRAGLHHQVLRALRACPPVERIVYVSCNPTVSLVRDAVTLCGPSTKSLQGRAFEPVHAVPVDMFPHTPHCEMIIVFDRVKAE 825
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7019.15178.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Methyltransf_251.500e-14285.40domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RRM3.530e-6444.10domain-containing protein n=10 Tax=Phytophthora Ta... [more]
23S5.850e-6443.75rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Ph... [more]
Uncharacterized8.510e-6342.36protein n=1 Tax=Phytophthora sojae (strain P6497) ... [more]
Uncharacterized7.860e-6242.01protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6... [more]
Uncharacterized9.200e-6242.81protein n=1 Tax=Phytophthora ramorum TaxID=164328 ... [more]
tRNA1.140e-6142.81(Uracil-5-)-methyltransferase n=2 Tax=Phytophthora... [more]
23s1.060e-6043.06rrna (Uracil-5-)-methyltransferase n=1 Tax=Plasmop... [more]
Uncharacterized3.510e-6043.16protein n=5 Tax=Phytophthora kernoviae TaxID=32545... [more]
RRM4.320e-6042.36domain-containing protein n=2 Tax=Peronospora effu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7019contigE_fasciculatus_S2_contig7019:1058..7965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score358.6
Seed ortholog evalue3.2e-96
Seed eggNOG ortholog2880.D7FLK1
Preferred nameTRMT2A
Model size1915
KEGG koko:K15331,ko:K15332
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
Exons8
EggNOG free text desc.S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
EggNOG OGsCOG2265@1,KOG2187@2759
EC2.1.1.35
Cds size1026
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7019.15178.1prot_E_fasciculatus_S2_contig7019.15178.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7019 1815..7395 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842361.6656063-UTR-E_fasciculatus_S2_contig7019:1057..18141696842361.6656063-UTR-E_fasciculatus_S2_contig7019:1057..1814Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7019 1058..1814 -
1696842361.7562554-UTR-E_fasciculatus_S2_contig7019:7395..74521696842361.7562554-UTR-E_fasciculatus_S2_contig7019:7395..7452Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7019 7396..7452 -
1696842361.7660685-UTR-E_fasciculatus_S2_contig7019:7890..79651696842361.7660685-UTR-E_fasciculatus_S2_contig7019:7890..7965Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7019 7891..7965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842361.677553-CDS-E_fasciculatus_S2_contig7019:1814..21771696842361.677553-CDS-E_fasciculatus_S2_contig7019:1814..2177Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7019 1815..2177 -
1696842361.693099-CDS-E_fasciculatus_S2_contig7019:2671..27761696842361.693099-CDS-E_fasciculatus_S2_contig7019:2671..2776Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7019 2672..2776 -
1696842361.7077296-CDS-E_fasciculatus_S2_contig7019:3499..37361696842361.7077296-CDS-E_fasciculatus_S2_contig7019:3499..3736Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7019 3500..3736 -
1696842361.7171776-CDS-E_fasciculatus_S2_contig7019:4408..45041696842361.7171776-CDS-E_fasciculatus_S2_contig7019:4408..4504Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7019 4409..4504 -
1696842361.726292-CDS-E_fasciculatus_S2_contig7019:4994..50901696842361.726292-CDS-E_fasciculatus_S2_contig7019:4994..5090Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7019 4995..5090 -
1696842361.7371674-CDS-E_fasciculatus_S2_contig7019:5422..54671696842361.7371674-CDS-E_fasciculatus_S2_contig7019:5422..5467Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7019 5423..5467 -
1696842361.7471473-CDS-E_fasciculatus_S2_contig7019:7311..73951696842361.7471473-CDS-E_fasciculatus_S2_contig7019:7311..7395Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7019 7312..7395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7019.15178.1

>prot_E_fasciculatus_S2_contig7019.15178.1 ID=prot_E_fasciculatus_S2_contig7019.15178.1|Name=mRNA_E_fasciculatus_S2_contig7019.15178.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=342bp
MRLLWGKERLEEKLLGLRFTISPNSFFQVNTRGAEALYGVVIENLELGDD
AVVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANDINN
CEFVCGKAEAVVGGQIAKACKQHKESLAAPTATAPTIAPATTTAGAGLEG
STTPELKFAAIVDPPRSGVHAKCLRSIRSTKAIKRLVYVSCNPTKSLAAD
ALILCTPVSKSTTGLPFRPVKAIPVDMFPHTPHMELVMVFERIEYETPEP
APSAVGHSEPSGSETAATAAAPKAAPAAAAAGGTTVPAAAAGADAAAGGA
VPATAAAAEDATAGGTVSTTAAVVAVPSAVNASEGSSLGSG*
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mRNA from alignment at E_fasciculatus_S2_contig7019:1058..7965-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7019.15178.1 ID=mRNA_E_fasciculatus_S2_contig7019.15178.1|Name=mRNA_E_fasciculatus_S2_contig7019.15178.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6908bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7019:1058..7965- (Ectocarpus fasciculatus EfasUO2)
GAATGGAAGAAAGAGGAAGAACGCCTCGTGAAGGAATTGTCCGCCGGGGC
CAAAGGAGATGACGGGACCAGACTCGTGAGTGCGTTTTCTTCGTGTGTCG
TGTTTGATGGTATCGTTGGCCTAAAGAGAGTCCGCAGGAAGTGTATGCCG
CTTGTTTGCCTCTTTCGGTGGTCAATCGATTATCTCGTTGATTTTGGGGG
ATCGGCAGGGTTATGGCCGAATTGCCTCGATTGGTGCACCGCCCGACCTC
TCGCCGCACCGCTGATGGTCTTGTCCCGGCACCAGAGGATCGATGGGTGT
CATTTTCGCCGACCCACTAACCGCAAGCCCCGAAATCTCCTCAGAATACC
CCTGAATTTCGTTACGGGTGGGCCCCCCTCCCCCTGCGAGTATTGTCCAT
ATCTTCTCGGGATAGTGCAAGGTGTACTCAAGCTCTCGCGTCCGGTGTGT
TAGTTTCGTTATTGACACCGACGGGGCTGACCAGGTCCAGGATTTCGCGC
CGCGTGTTTCCAGGTGTCTTTGTGGGTGCAGGAGTACGCGGGACTGTCAT
CTCCCGACGAGACATCGCCGATGCGCTTGTTGTGGGGCAAGGAGCGGTTG
GAGGAGAAGCTTCTCGGCCTCCGCTTCACCATCTCGCCAAACTCCTTCTT
CCAGGTGTGTGTGTGTGTGCCTGTGTGTTTATTGTCAGCATCGGCCGTGT
TAAACGGCTACCAGATGAAAATATGTCAGTCATATCGGGGAGACCTCAGA
AGGGGAACGGATTCGGCACGGGTCCCCCAGCTGCTGGGCCCCCAAAGGAC
TGAGAAATGAACGAAGGTATTGATCATTCCCTATTTCCCCCTCAAAAGCG
TCGTAAAGGAGAACAGGGAAACAAGTACATGGAGGCATGTCGGGTAGGGC
GACTCGATCGGGTGCGTCGGTGACCGCGTCAAGCCGTGGCAGGGGCCAGG
GCCGGGGCCGACGTGGATCAAGGGACCGGGGCGGCTCCCGCCTCCTCTCC
GGCTCCCGCTCCTGCGGCGGCTCCGGTAGCCGATACTGCAGCCGCTGCCG
CTTCCGCACCGGCTCCGGCGGCCCCTCCGGCGCCCTTAGCACCGCCGGCG
CCCCCCTTACAGCCCAATCTCACCACGGCGCCGGTGGTCGGTCGGCTGTA
CCACACCTCTGACGGACCTGGCCGTGTTGAGTAAGGGCTTCACGGAAACG
TTTAGCGCGTGTGGCGGTGGAAAACGCACCGAAAGGTTGAGGTTCGGCAT
GATTAGGATCGAGGTATGACGCCTGGTCGATAGGCGATGGCGGAGGATGC
GGAACGAAGTTTGGGCGGGTTCTTGTGACGGGACGGGCGACCTCGTCCAA
ACAAATCCAATACTTTTTATAAGTGATCTCAAAAACGGAGACGAGAATAC
GACAGTCTCGGTGCCGTTGAAAATCAAATGGTGTGTGCGTGTGCGTGTGT
TTGTTATTCGTATCGACCGCGCTAACCGGCTGACCAATGAAAAGACGTCA
GTCTCAGTGTGGTGGAAAACGGTGGAAAACACAAAATGCTTCTATAGTCC
ACAATCTGGGATCCTGTGACCGAGCGTCGTGGGGGAATCTACGCTACTCT
CCGGATGAAAGACAGATACCGTCCGTAGGAATAACAGAAGAAAATTGCAC
GGCTGCTACTACTTTGGTTGCCGTGTGTTTTGGATTGCTTTCATCGTCTT
CCCTGCATTTACTACCACCACTCTTCTTCTCGAGGCCAGCAATCCCATTA
CTTTTTAGCAGGTGTGTGTGTGTGTTTTGTTAATAGCGTCGACCGCGCTA
ACCGGCTGACCAATGAAAAGACGTCAGTCTTCGTGCGGTTGAAAACACAA
AATTCTTCCGAAGCCCATGATCTGGTTTATTTTTTATTTATTAGTTTTGC
GGGTCGGCTTGCTGGCGGTGCAGCGCAGCGAACACTGTTTGGCGAGTAGG
CTTGCGGGACAGTTGTAGGACAGCGAACACACTTCCATGGTGCCTCCCAT
GAAGTATCCCGCCGAAGTTCTTGCAGCCATTATGCTGTCGCGAAACGATG
TGCGGGTGGAAAGGACCGGCCTTGTCGATGGTGCTGAGGCGAAGAATTGG
AAGTACCAATGGCCTAGACACTAGGGATGAGATGGAATGAAGACGAGCTC
TTTGATGTCGCCACTTGGTCACGTGCCACTCACCACGTTCCACCTGCGGA
GTGTTTCGCGCACGGGAGTATGTAGAAGACGGAGGAATTGCTTTTTTTAG
TTGAACATGTGTAAACCGAACGTACGCTGTTAGTAAAGGCTGAGCTCACT
TGTGCGAAAGAGCGATTCTACTTCGCCTTAACTTCTCGGCATATTTTTGT
TTTTTTGCGGATGAATGAAGCCCCCTCGGTCACTCCCGAAGAGTCCTCCA
GTTGCCCATAAAGTGCGCGCTTATGGGAGATACTGTACCGCGCCGTCCGT
CCCCGCCCTGCCCCTCAAACTCTCTCATTGCTTGGCGTGTGTGCGCAGGT
GAACACAAGAGGAGCTGAGGCTTTGTACGGCGTGGTCATCGAGGTGAGAA
GGAGACAGATGCCAGCCAGCTGTCAAGAGATGTGTGTACGTTTGTTTCTA
GCAGTTGCGGGACTACAGCATGTATCGCATTCGAACCGTCTCGTCGAGAT
CTTTCCGAAAACGTAACGTATCGTTTGATTCTGGTACCCTCTTCGACATG
GAGTCATCGAGCTTTGAATATCGGTCCAAGGGGTGTAATATCTTCTGCCA
CGTACGGTAATCCAGGGATGCCAACACGCACGGCGTTACTTGCCTTCGAA
ACGCACCCCCTGCTGCTTCCTTTCCCGAGTCCACCATCCCCACACCCGTA
CTCCTCCTCTCGCTCTTCCGAGCAGAACCTTGAACTCGGTGATGATGCGG
TGGTGTTGGATGTTTGCTGCGGGGCCGGGACGATAGGAATCTGCGCCGCT
GCGGCTGGCGGGGCTAAGCAGGTGAGGTTGACGCCAACATATGGTTCGTC
TGCCTTCCTTTCCTTTCTTAACCTAGCGCAGCAGTTTTACCTCTCTGTGG
TTTGAAACACAGTCGCTCGCCTGTGGTTATTGGTTCGACGTATTGAAAAG
TGGATTCGATATTCTTCCATGAGAATGACGTAACTGAGAGAAGGCGTCCA
ACGCACTCTTGCGAGGTTGCCCCATCGTTTTCGTGGACACCTGATGGTCG
TTCTGATGGTTTTCTAGCTGTCTCGCCACCATCGGCACTGATGCTGCTGG
CGTAGACACGACCTAGGCTACAGTATGAGCTCACGTTGTACTCTGTACGT
ACCGCGAGACCATTTCGGTGGCGTCGGTTGCTTGTGTTTTTACTGTGATG
TGCTCGGTGCTATGTGCTGGATCGACGAATCCGATTTTTACCCTATTTGC
GACGAAAACGTCAATTTATTCTGTTTCGTTTGTCGCTTGGATGTGCTACA
TGCCCCCCTAGGTTTACGGATCGGACATTTGCCTTCCGGCAATCGAGGAT
GCTAGGCGTAACGCCCTGGCGAACGACATCAATAACTGCGAGTTCGTTTG
TGGCAAGGTGCGACCTCTCCTCCCCAATCTTTGGTTTTGACTATTTCTCG
AAGCTATCCACGCACCCAATGTCCCCTCTTGATTGCTGTGGCCACACGAC
AGGGGGCGTTGGTTGCCCCGGAACAAAGGGGCCCTTGTTCTCGTTCCCTC
TGGATGACAGTTTTTTTTTCACGTGGCGCACTGCTTCCGTGTTACGTGCC
TGCTTGACTCTCTTTGTGTGTCATGCCCCCCCTCTCACACGTTTTCGTCT
CGCGCATCTGTTGTGAATGATGTGCCTCCGACTCTAATTCGTTGATTCGC
ATGCGTGCGTACTTGTGTGTGTGAACAGTAGTCTGTGAGGCTCTACCAGA
CCAGCTGAGTAAGAGGGGAGGAGGGAGCATAGCTTTGCGTCTATATAGTT
CCCTCGAGGCTTTACGTGTGCACGTGCATGCGGTTGAGTGTCCCAGCAAA
GGCGAACAAATAAAGTACTAAAGAGTGCCATGTGCTTACAAACCTGAAAG
TCGGCAGGTCTCTCAAAACAGCACCATTCGTACCTCGACGCTGTTGTGGC
ACTTCTTATGGTGGCATCTCCATCTAGATACATGTGTTGCTGTTTCTCCT
GTTCATGCTTTCTATTGTCCCTGAATCATGCTACTTCTTTTGGCTATTTG
CACCGTTGCTGTTTACATTTTTACAATAGGCGGAGGCCGTGGTGGGCGGC
CAGATAGCGAAAGCATGCAAACAACACAAGGAAAGTCTTGCTGCACCGAC
AGCAACAGCACCTACAATAGCACCAGCAACGACGACAGCAGGGGCAGGCT
TAGAAGGGAGCACCACTCCCGAGCTCAAGTTTGCGGCCATTGTAGACCCC
CCACGCTCGGGCGTTCATGCGAAGTGTTTACGGTCGATCCGGAGTACCAA
GGCGATCAAGAGGCTGGTGAGATGCCGACAGCAGTCTACGCAATTTTCTA
CGCAGTCAAACCTATTGGATAACGTATATAATCCGCTAAGTGGAGGTTGG
GATTAGGGTCTGCGTACCCCCTGCCTGGTCTTTTTTCGTACTATTTGCGT
AGGCAGTCCAATGCCATCCGCAGCATGCTTGTGCTGGCAACGGTAGCTGG
CCGAATTGGAAAGAAGGCGTCCATCTGTTTTGGCTGCTGCGGTATATTCT
TCCGCAAGCATGCTAACCAACCGACTTCCTAGCATGATGAGCCGTTCACG
CTGTTCTAACTGTCTCCAATTTTTGTGAGCACCATGCGAGCAGGCGAGGC
CATCATTTTTTGTTTTCGCTTCCATTTTCGACGATTTGTTCTGTATTGTT
GTGTTTGCGCGAGTTTAAGCGTTATGAGCGGTCCTGAGCTGCGGTTGTTG
TCTACCCGAAGACGAGCTTGATCAACCTGCGACCAGTCCCTAAATCACCA
CCCCGAAAAGTTGTTACTACTTCTGCTGCGGCCGTTGATGCCGCTCGTCT
GCTGTTGTTATTGTTTTTTCGACCTTCTACGATAGTTTAAGTCTGTTTAC
AGCAGAAAAATATGCTACGATACCTACGAATTCGTGGTCGCAGGCCGATA
CGATATGCACCCAAGTAGTCGTGAACCTGATGGGCAGTGCCAGGGATGTT
GAAACGTTTTTTGTGGCCGCAACCCGTTCGCTATCTCAGGTGTACGTGTC
GTGCAACCCCACCAAGTCTCTTGCGGCGGATGCTCTCATCCTGTGCACTC
CAGTGTCCAAGAGTACTACAGGGCTGCCCTTCCGCCCTGTCAAGGTATGT
TTTGTGCGACAAGGGGATACATTTGGTGCAATACTGCTGTGTTGCAATCC
GGTACAGAACGATACCGCTGACATCTCCCTTAGGGCTTCATGCGGTTATT
CACACGGTGCGGGCGATTCTTGTTTGCCGTGCGGCGAAACCCGTGATGAT
GCGGAATGTGTGCGTCCCTTTTGAGCCGGGGGAGCCCACCGCTTGTTCCC
TTGCGTAAAATCTGCGGTGTGGCAAGCCTTGAGATTGAGCACGTGCCACT
AGCATGAGAACACTACGCTTACTCCGACCGGAATCATTGTGATAAATTCC
AACAACGACAACAACAATACCCAACTTCGGCGAGTAAATTGATCGGACGT
ACACACCCACACGCCTCGTCGCGAATTTTGGAGGGGAACGTTGTGTACAC
TCTGAGGAAAATATGCGCTTGCTTCGAGACCAATCCCCGGGACCGTGTAC
GGTCGCCCCCACTACCCGCCCTCCTTGCCCCGACGCAGGCCATTCCGGTG
GACATGTTCCCTCACACCCCTCACATGGAGCTCGTCATGGTGTTCGAGCG
CATCGAGTATGAGACGCCGGAACCCGCTCCTTCCGCTGTCGGACACAGCG
AGCCGTCTGGTTCAGAAACAGCGGCAACCGCAGCAGCACCGAAAGCAGCG
CCAGCGGCGGCAGCGGCTGGAGGAACAACCGTACCCGCAGCAGCGGCAGG
AGCAGATGCAGCCGCGGGAGGAGCGGTACCCGCAACAGCGGCAGCAGCAG
AAGATGCAACGGCGGGAGGAACGGTATCCACGACGGCGGCAGTTGTAGCA
GTACCTTCGGCGGTGAACGCGTCCGAAGGCTCTTCCTTGGGAAGTGGATG
ATGATTACACGTCTCCCTCCCTTGATTGTGGCACTGCCGCCGTTCACGAG
GCCGTTGCGGGTCCGTCGTAGGATTTTGTGGCAACGAAACACCCGTTCAG
GAGTTTTGTTCATAAGCCGCCCAGTTTGAGTCTCTATCGTTTTAAATAGT
TTCATCTGCTGGGGCAGCCTGGTATTGTTTGATGTTTCAGGTTGAGGTGT
TTGTCCCTCCTGTTTAGGCAAACGAGATACGGATACGGACTAGCGTATTT
AAATTGGATGGTTCCTCCGAACTCTCCAATGTATCAGACCACGCTGGAAG
AGACAAGCCTGTGAGAGAGACTAAAACACGTTGTGTGCAAGCGAAATATT
TACCAGGTCCTTGTTCTTCACCTCGCGTTGTGTCTATACCCCTTCGGCCG
AAACCTTTACGCAGTGCGCGAAAAGGTGCAGTCAAGCTACCGTGCTGTAT
GTGGCCACCGACCGAGATTTGTGAACCAACGGCAGATAGAGGCGGGTTGA
TATATTCGACCTAAAGTTGGCTGTAGCAATATTACTTGGACGCAACCTCT
GGCATGTGGATGAATGAACATCGTAAGAGGCCGAACCTGTATCAAGTTTT
TGTAAGATGAAAGATCGCCCTGGATCGCGGCGGATGAACCCAAATGGTCA
ATTACCGGTCGGATCATGGGTCGTGCCCACCTCTCTCCTGAAATACTGCT
GGGGATATATCGTCTGAGAATGCTACTACTCCGGGGCCATGGTTTCAGCG
CACCACCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7019:1058..7965-

>mRNA_E_fasciculatus_S2_contig7019.15178.1 ID=mRNA_E_fasciculatus_S2_contig7019.15178.1|Name=mRNA_E_fasciculatus_S2_contig7019.15178.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1026bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7019:1058..7965- (Ectocarpus fasciculatus EfasUO2)
ATGCGCTTGTTGTGGGGCAAGGAGCGGTTGGAGGAGAAGCTTCTCGGCCT
CCGCTTCACCATCTCGCCAAACTCCTTCTTCCAGGTGAACACAAGAGGAG
CTGAGGCTTTGTACGGCGTGGTCATCGAGAACCTTGAACTCGGTGATGAT
GCGGTGGTGTTGGATGTTTGCTGCGGGGCCGGGACGATAGGAATCTGCGC
CGCTGCGGCTGGCGGGGCTAAGCAGGTTTACGGATCGGACATTTGCCTTC
CGGCAATCGAGGATGCTAGGCGTAACGCCCTGGCGAACGACATCAATAAC
TGCGAGTTCGTTTGTGGCAAGGCGGAGGCCGTGGTGGGCGGCCAGATAGC
GAAAGCATGCAAACAACACAAGGAAAGTCTTGCTGCACCGACAGCAACAG
CACCTACAATAGCACCAGCAACGACGACAGCAGGGGCAGGCTTAGAAGGG
AGCACCACTCCCGAGCTCAAGTTTGCGGCCATTGTAGACCCCCCACGCTC
GGGCGTTCATGCGAAGTGTTTACGGTCGATCCGGAGTACCAAGGCGATCA
AGAGGCTGGTGTACGTGTCGTGCAACCCCACCAAGTCTCTTGCGGCGGAT
GCTCTCATCCTGTGCACTCCAGTGTCCAAGAGTACTACAGGGCTGCCCTT
CCGCCCTGTCAAGGCCATTCCGGTGGACATGTTCCCTCACACCCCTCACA
TGGAGCTCGTCATGGTGTTCGAGCGCATCGAGTATGAGACGCCGGAACCC
GCTCCTTCCGCTGTCGGACACAGCGAGCCGTCTGGTTCAGAAACAGCGGC
AACCGCAGCAGCACCGAAAGCAGCGCCAGCGGCGGCAGCGGCTGGAGGAA
CAACCGTACCCGCAGCAGCGGCAGGAGCAGATGCAGCCGCGGGAGGAGCG
GTACCCGCAACAGCGGCAGCAGCAGAAGATGCAACGGCGGGAGGAACGGT
ATCCACGACGGCGGCAGTTGTAGCAGTACCTTCGGCGGTGAACGCGTCCG
AAGGCTCTTCCTTGGGAAGTGGATGA
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