mRNA_E_fasciculatus_S2_contig7018.15177.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7018.15177.1
Unique NamemRNA_E_fasciculatus_S2_contig7018.15177.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7018.15177.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7018contigE_fasciculatus_S2_contig7018:5506..6360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size519
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-16_004370.1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842361.6097028-CDS-E_fasciculatus_S2_contig7018:5505..56441696842361.6097028-CDS-E_fasciculatus_S2_contig7018:5505..5644Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7018 5506..5644 +
1696842361.6299117-CDS-E_fasciculatus_S2_contig7018:5980..63601696842361.6299117-CDS-E_fasciculatus_S2_contig7018:5980..6360Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7018 5981..6360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7018.15177.1prot_E_fasciculatus_S2_contig7018.15177.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7018 5506..6360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7018.15177.1

>prot_E_fasciculatus_S2_contig7018.15177.1 ID=prot_E_fasciculatus_S2_contig7018.15177.1|Name=mRNA_E_fasciculatus_S2_contig7018.15177.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=173bp
AQVAAAVGGGKTPEQCFNRWHAEYSQQAALEQQQQQQQQWLLQQQQAGGG
GGSAHHPHLYQQHLLMQQQQQQQQQAAPASEHHHAGWGSQYDGRPSAREP
NVQTSLSDWRPPGAGGGYGYGSGGRGMRGGPPRGAGGWTGKMAEEGDAVL
GSHGLHMLAQAASASEEDEEEG*
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mRNA from alignment at E_fasciculatus_S2_contig7018:5506..6360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7018.15177.1 ID=mRNA_E_fasciculatus_S2_contig7018.15177.1|Name=mRNA_E_fasciculatus_S2_contig7018.15177.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=855bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7018:5506..6360+ (Ectocarpus fasciculatus EfasUO2)
GCACAGGTGGCTGCCGCGGTTGGGGGCGGGAAGACTCCCGAGCAGTGCTT
CAACCGTTGGCACGCAGAGTACAGCCAACAGGCTGCCCTCGAACAGCAGC
AGCAGCAGCAGCAGCAGTGGTTGCTCCAGCAGCAGCAGGGTGAGTTTGTC
TCACGCTTTTACGCGGCGAAGGCGCTGTATCGTCTAGACGAGAACCAAGG
ATAGGCAAACGGCCTCCTGGAAGTATACCATGGGTGTGATCAACACCAAC
CTCGCTCCTGAAACTACAGCCATCAATCGCGTCTGTCTGTTTCTGTGCTT
GTTTTTGTCCCATCAATAGTACAGCAGTTTCGTGGTCAAATTAAACCCGT
TCACGCACAATCCAATATAACCTCAATGCCGCATCGAAATCATGTTGATC
TTGGGGAGCTCAAACATCCCCGCTCCCCGCCCGCCTGCCCGCATTCCCCA
CATGCCACCACCAACAACCATCTAGCTGGTGGCGGCGGGGGAAGCGCCCA
TCACCCCCACCTGTACCAGCAGCACCTGCTCATGCAGCAGCAGCAGCAGC
AGCAGCAGCAGGCAGCCCCGGCCAGCGAGCACCACCACGCCGGCTGGGGG
TCTCAGTACGATGGGCGTCCGTCCGCTAGGGAGCCCAACGTGCAGACGAG
CTTGTCCGACTGGCGTCCCCCCGGGGCGGGCGGCGGCTACGGCTACGGCA
GCGGTGGCCGCGGAATGAGGGGAGGGCCGCCCCGCGGGGCCGGGGGATGG
ACGGGTAAGATGGCGGAGGAGGGAGATGCGGTGCTTGGCTCGCACGGCCT
TCACATGCTGGCTCAAGCGGCATCTGCGTCCGAAGAGGACGAGGAAGAGG
GGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7018:5506..6360+

>mRNA_E_fasciculatus_S2_contig7018.15177.1 ID=mRNA_E_fasciculatus_S2_contig7018.15177.1|Name=mRNA_E_fasciculatus_S2_contig7018.15177.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=519bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7018:5506..6360+ (Ectocarpus fasciculatus EfasUO2)
GCACAGGTGGCTGCCGCGGTTGGGGGCGGGAAGACTCCCGAGCAGTGCTT
CAACCGTTGGCACGCAGAGTACAGCCAACAGGCTGCCCTCGAACAGCAGC
AGCAGCAGCAGCAGCAGTGGTTGCTCCAGCAGCAGCAGGCTGGTGGCGGC
GGGGGAAGCGCCCATCACCCCCACCTGTACCAGCAGCACCTGCTCATGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGCAGCCCCGGCCAGCGAGCACCACC
ACGCCGGCTGGGGGTCTCAGTACGATGGGCGTCCGTCCGCTAGGGAGCCC
AACGTGCAGACGAGCTTGTCCGACTGGCGTCCCCCCGGGGCGGGCGGCGG
CTACGGCTACGGCAGCGGTGGCCGCGGAATGAGGGGAGGGCCGCCCCGCG
GGGCCGGGGGATGGACGGGTAAGATGGCGGAGGAGGGAGATGCGGTGCTT
GGCTCGCACGGCCTTCACATGCTGGCTCAAGCGGCATCTGCGTCCGAAGA
GGACGAGGAAGAGGGGTGA
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