mRNA_E_fasciculatus_S2_contig7005.15163.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7005.15163.1
Unique NamemRNA_E_fasciculatus_S2_contig7005.15163.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7005.15163.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R4_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 3.560e-49
Identity = 114/122 (93.44%), Postives = 117/122 (95.90%), Query Frame = 3 
Query:    3 PPEHGQAWAGGNGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCFVNTAFSMDLVVLQGLGRIPGGTNKTPPRARGFAEDDIVGGICGEGGKGGSWELRPGSNGAVRIHKTGFFEKQLAHN 368
            PPEHGQAWAGGNGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCFVN AFSMDLVVLQG+GRIPGGT+K PPRARGFAEDDI GGICGEGG+GG WELRPGSNGAVRIHK GFFEKQLAHN
Sbjct:  183 PPEHGQAWAGGNGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCFVNAAFSMDLVVLQGIGRIPGGTDKMPPRARGFAEDDIAGGICGEGGEGGPWELRPGSNGAVRIHKMGFFEKQLAHN 304
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7005.15163.1 vs.
Match: Similar (to TNF receptor associated factor 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y7_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 2.700e-47
Identity = 117/122 (95.90%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:    3 PPEHGQAWAGGNGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCFVNTAFSMDLVVLQGLGRIPGGTNKTPPRARGFAEDDIVGGICGEGGKGGSWELRPGSNGAVRIHKTGFFEKQLAHN 368
            PPEHGQAWAGGNGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCFVNTAFSMDLVVLQG+GRIPGGT+KTPPRARGFAEDDI+GGICGEGGKGG  ELRPGSNGAVRIHKTGFFEKQLAHN
Sbjct:  636 PPEHGQAWAGGNGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCFVNTAFSMDLVVLQGIGRIPGGTDKTPPRARGFAEDDIIGGICGEGGKGGPRELRPGSNGAVRIHKTGFFEKQLAHN 757
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7005.15163.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.560e-4993.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Similar2.700e-4795.90to TNF receptor associated factor 4 n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7005contigE_fasciculatus_S2_contig7005:2475..5360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size778
Hectar predicted targeting categoryother localisation
Exons4
Cds size213
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7005.15163.1prot_E_fasciculatus_S2_contig7005.15163.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7005 2882..4488 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.4723935-UTR-E_fasciculatus_S2_contig7005:2474..28811696842360.4723935-UTR-E_fasciculatus_S2_contig7005:2474..2881Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7005 2475..2881 -
1696842360.5215387-UTR-E_fasciculatus_S2_contig7005:4488..45761696842360.5215387-UTR-E_fasciculatus_S2_contig7005:4488..4576Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7005 4489..4576 -
1696842360.5370135-UTR-E_fasciculatus_S2_contig7005:5290..53601696842360.5370135-UTR-E_fasciculatus_S2_contig7005:5290..5360Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7005 5291..5360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.4898243-CDS-E_fasciculatus_S2_contig7005:2881..29271696842360.4898243-CDS-E_fasciculatus_S2_contig7005:2881..2927Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7005 2882..2927 -
1696842360.5008683-CDS-E_fasciculatus_S2_contig7005:3679..38061696842360.5008683-CDS-E_fasciculatus_S2_contig7005:3679..3806Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7005 3680..3806 -
1696842360.5108066-CDS-E_fasciculatus_S2_contig7005:4448..44881696842360.5108066-CDS-E_fasciculatus_S2_contig7005:4448..4488Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7005 4449..4488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7005.15163.1

>prot_E_fasciculatus_S2_contig7005.15163.1 ID=prot_E_fasciculatus_S2_contig7005.15163.1|Name=mRNA_E_fasciculatus_S2_contig7005.15163.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=71bp
MDLVVLQGLGRIPGGTNKTPPRARGFAEDDIVGGICGEGGKGGSWELRPG
SNGAVRIHKTGFFEKQLAHN*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7005:2475..5360-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7005.15163.1 ID=mRNA_E_fasciculatus_S2_contig7005.15163.1|Name=mRNA_E_fasciculatus_S2_contig7005.15163.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2886bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7005:2475..5360- (Ectocarpus fasciculatus EfasUO2)
TCCCGCCAGAGCACGGCCAAGCTTGGGCCGGCGGCAACGGGGGGCAATAC
GGTGGCGGCGGCGGCTCCGGGTGTGTATGTTGTCAGCCTCGTTTACTTCG
TTTTACGTCCCAGCTACAACATCGCAAGGTTGCGAGTCTCCGCAGAGTTC
TTCAAAGCTTCACTGCTCCACAACAAGGAGGGTGCGAGAGCCAAGAATCA
CGTCCAATGAAAGATGTCGACGAGAAAACTCCAAAACCACCCTTTTCTGC
AGGGGTGTATCCCCAATTGTAGAGCAATGAATATTTGAAAAACTGTGCCG
AGACTCGCAACCTTACGGTACTGCCACAGCCTGCCGTCTTTCCCGGTCCT
ACGGTTGTTTCTTATCGCCTGCGTAGCTCGTACAGTACAACTACGTGAGG
TCATAGAACTAGCTGTGTGGTACATCCTGGCACGCCAAAAAATGCCGCCC
AACCTGGCGAGGGGGACACGATGTACTTGCGAAGGTATCGTAACGGCTAG
CTTCTGCTTGCCCCCACCGGCCAGACTCTGCTCATGACGTGTGCTTCATG
GTCAGACACGTCTCTTGCAAAACCACGATTCCCTGCAGAGGTTTAGAAAC
AAATGTAGCCGAAAGGGCACGATTCACGCAGATCTCTCTCATTTTGCACA
CGTTTGCACAACAATCGAAACTGTGCGCTTCACACCTTTGTATGGCCATA
CTTGCGAGTGAACCTCTGTTGTTCTGGAATGCACCAGAACACTCCACGAC
CCCTCTTGCGTTCCCGGCATGCCAAATTTGCCAGGTGGTTTGGAGGGGGT
GGTGGAGGAACGTCCCCGGGGATTGTCGGAGGTGGTGGCGGGGGCTCGTG
CTTCGTCAATACCGCGTTCTCTATGGACCTGGTGGTTCTCCAAGGGCTAG
GGCGTATACCAGGTATGTACGACCTCCTTGAAGAGGAGCTAATTCGGGCA
TGTAACGCTTTGGAGTTCCATGAGCCCATCCAAGGCTTTGGGGGAAGGAA
AACAATGTGTAGACTCGTTGTTTGCAACAGAACATTGGATGCTCACAAGG
TCTGCCGTCGTTGCTCACAAGGTCTGCCGTCGTTGTTCCTGCAACATGCA
GCGACGGCCTGCATCCACGCCCGCCAACTACGAACGGCGACCCCATAGAA
ACAACTCGGTGGAAGATCAAGACACACTGAGAAACGAGCCTCGGGGAAAG
ATATGAGGTCCTTAGGTGGCGCCTTCTGTATTGATTGGTGAAATGACAAT
AGAGCATGGGTTTGGCTTTTCGGCTGGGATCCCACCAGACTCTACCCAGC
CATCACAGTTGTTGATGGTCAGGGAGTTGTTCTTTCGTTCCGTCTTCGTT
CCTGTGGGCGCGTGACTCCATCTCGGGCCCACTTCACACAGCAAAAGCCG
GCCCCGAAACCCGAAGCCTCTCCCGTACGTCCTATCGTGATACGGTTGTG
ATCCCAACTAACCGAAGCCACGGACGGCCTGCAAAGTCTCCCGTAAAAGC
CGAAGGCTCTCGATACTTGCCAACATCCACTGTTTTTCCTTTATCCTGTA
ACAGGTGGAACCAATAAAACGCCGCCGCGGGCGAGAGGTTTTGCGGAGGA
TGACATTGTAGGAGGAATCTGTGGAGAAGGGGGTAAGGGGGGATCGTGGG
AGCTTAGGCCTGGAAGCAACGGCGCCGTAAGGTAAGAGCTCAGAGGCCAC
CTGATGTGTTGGTGCAATGAAGGGGAAAACCCAAGACCAAGACTTACAAG
AAAAGTGATAGGGTGGGGCGCTCGGTACGATGTATGTTGAAAAGAACCCC
CCGAGCCATGTCCAACAGCGGCACAAGGTAAAGGCGCGCATGGGGTCCTC
GACAGTGTGAAAGATGGGTTATTGGACAAGCTGGTTGCACGATGCGGTAG
ACAACTTTCGATACCTTGCCATAGGGAGGGGACGCGATATCGATACGAAA
ACCCCGTTCAAGTGGAGGAAAGGTACAACAATCGGCACGTCGACCGTTCA
GCAAACAATCGTATGTAGACGCTATAATGCAGGACTTCAGAGGACGGAGT
AAAATTACAATATAGCATCACTCAATTGGTGTGAAATCGTTTTGAGACAT
GTAGACGCTATAATGTAGGACTTCAGAAGACGGAGTGAAATTACAATATA
ACATCAGTCAATTGGTGTGAAATGGTTTTAAGACGATTATGAGAAGGTTT
CGCTGGTGCACTGATCAACACACACTCTTCGAGCCTCACACGTTCATCCC
CACCGAACCTGCATGCAGAGGAAGTTGAAGGAGCCAGTCGTGAGTGAGTG
TGTACGCCGTCCGCCACTCTTCAAAGAAGCTTCCTTGCGGGATGGGCTGG
TTGTTGTCGAATTTGGTGTGTAGTGCAATTGTCCAAACGATTCACATTCA
TGCGTGACCCCCTCCCTGCGTGCGATGATTCAGAATCCACAAGACGGGCT
TCTTCGAGAAGCAGCTCGCACACAACTGAGCCGGCGGGTGTGCTTCACTA
AGAGCCAAGAAAGACAGGCCACCTGATCTAGGATGAGACTCGAGAACAAT
CGCCCATGATCGTTTGAGGTCTGACGCCCTTGAGGAATGTGGCGGCAACA
ATGTGGTGGCAATCGAGACGGCACACCCCCTTGGCTTTACGAGTATTCAA
GTATCGTGGGAGCAACAGTTGTTTGGCAATCGTAGAGGTATGATACCCTC
CCCATTTGCGCACCCTGGGTGAAATGATTGATGTGGGAGCAGAAGTTGTT
GGACAAGTTTTTTGTCACACCCCCTTCTTATCACACAGCCTGATTGCGGG
CTCCATCAGCGTACACTTTGTGGCACCGTTCACAACAGAGCACACCAGCT
GTAGCACCCCCACGTGAAAGGTGCTTATCACCTGGC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7005:2475..5360-

>mRNA_E_fasciculatus_S2_contig7005.15163.1 ID=mRNA_E_fasciculatus_S2_contig7005.15163.1|Name=mRNA_E_fasciculatus_S2_contig7005.15163.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=213bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7005:2475..5360- (Ectocarpus fasciculatus EfasUO2)
ATGGACCTGGTGGTTCTCCAAGGGCTAGGGCGTATACCAGGTGGAACCAA
TAAAACGCCGCCGCGGGCGAGAGGTTTTGCGGAGGATGACATTGTAGGAG
GAATCTGTGGAGAAGGGGGTAAGGGGGGATCGTGGGAGCTTAGGCCTGGA
AGCAACGGCGCCGTAAGAATCCACAAGACGGGCTTCTTCGAGAAGCAGCT
CGCACACAACTGA
back to top