mRNA_E_fasciculatus_S2_contig70.15151.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig70.15151.1 vs.
Match: UBX (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT74_ECTSI) HSP 1 Score: 738 bits (1906), Expect = 7.330e-260 Identity = 435/521 (83.49%), Postives = 443/521 (85.03%), Query Frame = 2
Query: 71 MADFLNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGAAPTGQQQSEKTPALQGGTMTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQMPSRTSDESNVANDDPENAKAERPPVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSVK-------------------VVELRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATTSSRGSSPTQSVSXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSPMDXXXXXXXXXXXXXXXXXXXGGAKKRAFDLEKHRLAKFQQLPEEPPRDEEGVFTCQLRTTEGKVTRRFRFADALGVLLDFCESQGGVPGHYRLVVPFPRRVLTRDDASAGTTLREAGLTSKQESVILERI 1576
MADFLNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALE LSRQDAVGLGPMLFELTCTTSGAAPT QQQ EK PALQGGT+TTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQ+PSRTSDE+ ANDDPENAKAERP VEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFS+K VVELRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAAT SSRGSSPTQS+S GLSPMD GG KK AFDLEKHRLAKFQQLPEEPPRDEEGVFTCQLRTTEGK TRRFRFADALGVLLDFCE+QGGVPG YRLV+PFPRRVLTRDDASAGTTL EAGLTSKQESVILER+
Sbjct: 1 MADFLNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALECLSRQDAVGLGPMLFELTCTTSGAAPTSQQQPEKAPALQGGTITTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANDDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSLKSEDSHSPLTPEREPPLTMQVVELRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATISSRGSSPTQSLSPPPSGRGYAVGGKGSSVAAGGRDTSTTGLSPMDDSESDDDSDLDSDDERSTPGGPKKGAFDLEKHRLAKFQQLPEEPPRDEEGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTLHEAGLTSKQESVILERL 521
BLAST of mRNA_E_fasciculatus_S2_contig70.15151.1 vs.
Match: UBX (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT31_9STRA) HSP 1 Score: 167 bits (422), Expect = 4.860e-41 Identity = 107/242 (44.21%), Postives = 144/242 (59.50%), Query Frame = 2
Query: 293 TAGISYKESLLAVTADGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGAAPTGQQQSEKTPALQGGTMTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQMPSRTSDESN------VANDDPENAKAERPPVEGLE-NVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSVKVVELRPEPQVTVIDTDMEIELDLPEKAREQLQE 997
TAGI+Y L T GEGDKI+LPPSALE+L++QDA+ LGPMLF+L+ P +S++ PA R THAGVLEF A++G IGLP KV SL+ P T ++ + V E + P G V V+YVRL K T+A+V P T L V EL+ MLE N++NHATL+ GD L VW RG+ F ++V L P VTVIDTD+ +++++PE+ E+ +E
Sbjct: 71 TAGITYSCDLWPYTVSGEGDKIILPPSALETLTQQDALALGPMLFQLSLL-----PAEGNKSKQLPAGA-------RVTHAGVLEFSAEDGRIGLPLKVRKSLVAE-----PEETREDGSRGMKERVEGPGGEEGDSRASPAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVTGLEPTQAVTVIDTDLTVDVEVPEEQTERERE 295
BLAST of mRNA_E_fasciculatus_S2_contig70.15151.1 vs.
Match: UBX (domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG13_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.580e-32 Identity = 125/317 (39.43%), Postives = 169/317 (53.31%), Query Frame = 2
Query: 83 LNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGAAPTGQQQSEKTPALQGGTMTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQMPSRTSDESNVANDDPENAKAERPPVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDHLSVWRRGKE-FSVKVVELRPEPQVTVIDTDMEIELDLP-------EKAREQLQEKGA 1006
L+L+SR K +EQ KRRD A+ +I+ ERR + A AK + + XXXXXXXXX +Q T GI Y + L V G+GDKI LP SALE L+ Q+A+ LG FEL+ + E T + Q R THAGVLEFVADEGT+GLP KV SL A Q+P +N+ VR+VRL K FA + P G + + + +LE +++ H TLTVGD L V R G+E F V V EL+PE V +++TD+E+ + LP ++A +QL+E+ A
Sbjct: 3 LDLNSRSAKWNREQTKRRDQAKRKIEAERRKRVAVAKAREELEALQTQKRVEXXXXXXXXXQQALEEQRLTGGIKYLQQLRPVPTSGDGDKITLPVSALEELNPQNALELGVFTFELS----------YDEPEATESWQ-------RKTHAGVLEFVADEGTVGLPPKVAASLF-QNAKQLP---------------------------DNIRVRFVRLEKGKFASLQPRGDGFGERQIDFKHLLERSLKAHTTLTVGDVLFV-RHGRETFEVVVAELKPEEAVNILNTDLEVAI-LPSESAARAKEAEKQLEEEAA 272
BLAST of mRNA_E_fasciculatus_S2_contig70.15151.1 vs.
Match: UBX (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWI9_GLOUD) HSP 1 Score: 140 bits (353), Expect = 1.580e-31 Identity = 122/301 (40.53%), Postives = 159/301 (52.82%), Query Frame = 2
Query: 83 LNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGAAPTGQQQSEKTPALQGGTMTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQMPSRTSDESNVANDDPENAKAERPPVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDHLSVWRRGKE-FSVKVVELRPEPQVTVIDTDMEIELDLPEKA 979
++L++RG K KKE+QKRRDAA+ ++Q E+ + AA K Q + XXXXXXX +Q T GI Y + L V A +GDKI LP SALE L+ Q+A LG FEL + P Q TTR THAGVLEFVA+EGT+GLP KV SL SN P E + V+Y+RL K FA + P VG + + + +LE +++ H TLTVGD L V R GKE F V V EL+PE V +++TD+E+ L LP +A
Sbjct: 3 MDLNTRGAKWKKEEQKRRDAAKRKLQTEQLKRAAADKVQREMERVQAQKXXXXXXXQAQLEELALEEQRVTGGIKYLQRLRPVPAVTDGDKITLPVSALEELNPQNAHELGVFTFELLY--------------EDPLTQ-----TTRKTHAGVLEFVAEEGTVGLPPKVAASLF--------RNLGGSSNSVGQVP-------------EAIQVKYIRLEKGKFASLQPRGVGFGEREIDFKKILERSLKAHTTLTVGDVLFV-RHGKETFEVLVAELQPEAAVNILNTDLEVAL-LPSEA 261
BLAST of mRNA_E_fasciculatus_S2_contig70.15151.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVE0_HETAK) HSP 1 Score: 129 bits (324), Expect = 4.670e-31 Identity = 71/141 (50.35%), Postives = 90/141 (63.83%), Query Frame = 2
Query: 524 TTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQMPSRTSDESNVANDDPENAKAERPPVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSVKVVELRPEPQVTVIDTD 946
TTH GVLEF A+EG +GLP KV+ SL G A Q +N + + + V ++Y+RL KATFA++ PE GLSQ+ E+RA+LEHNMRNHATL++GD L VW RGK F +V+ELRP TVIDTD
Sbjct: 14 TTHCGVLEFTAEEGCVGLPPKVLASL-GIAPEQ----------------DNTQHQGVAPSSVGQVQIKYIRLEKATFAKIRPEKAGLSQIDEIRAVLEHNMRNHATLSLGDKLIVWFRGKAFECEVLELRPAAACTVIDTD 137
BLAST of mRNA_E_fasciculatus_S2_contig70.15151.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RIV7_9STRA) HSP 1 Score: 135 bits (341), Expect = 4.860e-30 Identity = 104/295 (35.25%), Postives = 143/295 (48.47%), Query Frame = 2
Query: 83 LNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGAAPTGQQQSEKTPALQGGTMTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQMPSRTSDESNVANDDPENAKAERPPVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDHLSVWRRGKE-FSVKVVELRPEPQVTVIDTDMEIEL 961
L+L+SR +K +EQ KRR+ A+ +I+ ERR + A AK + + +Q T GI Y + L V G+GDKI LP SALE L Q+A+ LG FEL+ GG T R THAGVLEFVA+EGT+GLP KV SL Q+P ++ VR+VRL K FA + P G + + MLE +++ H TLT GD L V R G+E F V V EL+PE + +++TD+E+++
Sbjct: 3 LDLNSRNSKWNREQNKRREQAKRKIETERRKRAAVAKAREELEKLQMQKRVERIAELERQEQQALEEQRLTGGIKYLQQLRPVPTKGDGDKITLPVSALEELDPQNALELGVFTFELSFDED--------------HHDGGASTLKRQTHAGVLEFVAEEGTVGLPPKVATSLF-RYTKQLPG---------------------------SIKVRFVRLEKGRFATLQPRGEGFGDRQIDFKHMLERSLKTHTTLTEGDVLFV-RHGRETFEVLVAELKPERAINILNTDLEVDM 254
BLAST of mRNA_E_fasciculatus_S2_contig70.15151.1 vs.
Match: Ubiquitin (fusion degradation protein 1 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CLD7_PHYNI) HSP 1 Score: 134 bits (338), Expect = 1.150e-29 Identity = 107/295 (36.27%), Postives = 145/295 (49.15%), Query Frame = 2
Query: 83 LNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGAAPTGQQQSEKTPALQGGTMTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQMPSRTSDESNVANDDPENAKAERPPVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDHLSVWRRGKE-FSVKVVELRPEPQVTVIDTDMEIEL 961
L+L+SR K +EQ KRR+ A+ +I+ ERR + AAAK + +Q T GI Y + L V G+GDKI LP SALE L+ Q+A+ LG FEL+ QQ E + A R THAGVLEFVADEGT+GLP KV SL R E +++ VR+VRL K FA + P G + + MLE +++ H TLT GD L V R G+E F V V EL+PE + +++TD+E+++
Sbjct: 3 LDLNSRNAKWNREQNKRREQAKRKIETERRKRAAAAKASEELEKLQMQKRVERIAELERQEQQALEEQRLTGGIRYLKQLRPVPTTGDGDKIALPVSALEELNPQNALELGVFTFELSFDED------QQGGEASIAK--------RQTHAGVLEFVADEGTVGLPPKVAASLF----------------------------RHTKELPDSIQVRFVRLEKGKFASLQPRGEGFGDRQIDFKHMLERSLKAHTTLTEGDVLFV-RHGRETFEVLVAELKPERAINILNTDLEVDM 254
BLAST of mRNA_E_fasciculatus_S2_contig70.15151.1 vs.
Match: UBX (domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KPJ2_9STRA) HSP 1 Score: 134 bits (336), Expect = 2.200e-29 Identity = 125/307 (40.72%), Postives = 162/307 (52.77%), Query Frame = 2
Query: 83 LNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGAAPTGQQQSEKTPALQGGTMTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQMPSRTSDESNVANDDPENAKAERPPVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDHLSVWRRGKE-FSVKVVELRPEPQVTVIDTDMEIELDLPEKAREQLQE 997
L+L+SR K +EQ KRRD A+ +I+ ERR XXXXXXXXXXXXXX +Q T GI Y + L+ V G+GDKI LP SALE L+ Q+A+ LG FEL+ G QQ E L THAGVLEFVADEGT+GLP KV SL H +P E++ VR+VRL K FAR+ G + + MLE ++R+H TL VGD L V R G+E F V V EL+PE V +++TD+E+++ +P +A Q +E
Sbjct: 3 LDLNSRNAKWSREQNKRRDQAKRKIETERRXXXXXXXXXXXXXXXXXXXXXXXXXXLARQEQHALEEQRLTGGIKYLQQLIPVPTTGDGDKITLPVSALEELNPQNALELGVFTFELSYEEHG------QQGENERIL----------THAGVLEFVADEGTVGLPPKVAASLFQQTEH-LP---------------------------ESIRVRFVRLEKGKFARLQARGDGFGDRQIDFKHMLERSLRSHTTLMVGDVLFV-RHGRETFEVVVAELKPEAAVNILNTDLEVDI-VPSEAATQAKE 263
BLAST of mRNA_E_fasciculatus_S2_contig70.15151.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z601_PHYSP) HSP 1 Score: 133 bits (335), Expect = 3.230e-29 Identity = 109/295 (36.95%), Postives = 151/295 (51.19%), Query Frame = 2
Query: 83 LNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGAAPTGQQQSEKTPALQGGTMTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQMPSRTSDESNVANDDPENAKAERPPVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDHLSVWRRGKE-FSVKVVELRPEPQVTVIDTDMEIEL 961
L+L+SR K +EQ KRR+ A+ +I+ ERR + AAA+ + + XXXX +Q T GI Y + L V +GDKI LP SALE L+ Q+A+ G FEL+ + + L+ R THAGVLEFVA+EGT+GLP KV SL G + Q+P ++V VR+VRL K FA + P G S + + MLE +++ H TLT GD L V R G+E F V V ELRPE V +++TD+E+++
Sbjct: 3 LDLNSRNAKWNREQNKRREQAKRKIETERRKRAAAARAREELEQLXXXXRVERIAELERQEQQALEEQRLTGGIKYLQRLRPVPTASDGDKISLPVSALEELNPQNALERGVFTFELSFEQXXXXXXXXXXAGENVPLK-------RLTHAGVLEFVAEEGTVGLPPKVAASLFGQS-RQLP---------------------------DSVQVRFVRLEKGQFASLQPRGDGFSDRQIDFKHMLERSLKAHTTLTEGDVLFV-RHGRETFEVLVAELRPERAVNILNTDLEVDI 261
BLAST of mRNA_E_fasciculatus_S2_contig70.15151.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NSZ5_PHYIT) HSP 1 Score: 132 bits (331), Expect = 9.350e-29 Identity = 105/298 (35.23%), Postives = 146/298 (48.99%), Query Frame = 2
Query: 83 LNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTS---GAAPTGQQQSEKTPALQGGTMTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQMPSRTSDESNVANDDPENAKAERPPVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDHLSVWRRGKE-FSVKVVELRPEPQVTVIDTDMEIEL 961
L+L+ R K +EQ KRRD AR +I+ ERR + AAAK + + +Q T GI Y + L V G+GDKI LP SALE L+ Q+A+ LG FEL+ G APT + Q THAGVLEFVA+E T+GLP KV SL Q+P+ ++ VR+VRL K FA + P+ G + + MLE +++ H TLT GD L V R G+E F V V EL+P+ + +++TD+E+++
Sbjct: 3 LDLNMRNAKWAREQNKRRDQARSKIEAERRKRTAAAKAREELEKLQMQKRVERIAELEMQEQQALEEQRLTGGIKYLQQLRPVPTTGDGDKITLPVSALEELNPQNALDLGVFTFELSFDDDQQGGEAPTVRSQ-----------------THAGVLEFVAEERTVGLPPKVAASLF-RYTKQLPA---------------------------SIQVRFVRLEKGKFASLRPKGEGFGDRQIDFKHMLERSLKAHTTLTEGDVLFV-RHGRETFEVLVTELKPDRAINILNTDLEVDM 254 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig70.15151.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig70.15151.1 >prot_E_fasciculatus_S2_contig70.15151.1 ID=prot_E_fasciculatus_S2_contig70.15151.1|Name=mRNA_E_fasciculatus_S2_contig70.15151.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=503bp MADFLNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIEEQIback to top mRNA from alignment at E_fasciculatus_S2_contig70:30047..35546- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig70.15151.1 ID=mRNA_E_fasciculatus_S2_contig70.15151.1|Name=mRNA_E_fasciculatus_S2_contig70.15151.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5500bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig70:30047..35546- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig70:30047..35546- >mRNA_E_fasciculatus_S2_contig70.15151.1 ID=mRNA_E_fasciculatus_S2_contig70.15151.1|Name=mRNA_E_fasciculatus_S2_contig70.15151.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1509bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig70:30047..35546- (Ectocarpus fasciculatus EfasUO2)back to top |