mRNA_E_fasciculatus_S2_contig6997.15134.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6997.15134.1
Unique NamemRNA_E_fasciculatus_S2_contig6997.15134.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6997.15134.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V0_9PHAE)

HSP 1 Score: 337 bits (864), Expect = 9.760e-109
Identity = 179/216 (82.87%), Postives = 188/216 (87.04%), Query Frame = 1 
Query:   16 RSAMKRREPKAGIPWTVGSEAESPLLLEAQRLALDVERSLQCRNCTPNCPINGPRHSWEFMRCESEATEILGVDAELKVNFECVNCHSIHLGVPLPAKGLGSEAQSWSMADRVVRGTFDSIQSWLRVRAVTRRKANRMTSRHRHGSPHETAAEEEAAARSVARSSVEEEESVGSADREEATAGREGGVQRAPTSGEGDEATEADNEAAISRASESL 663
            RSAMKRREP AGIPWTVG EAE+PLLL A RL+LDVERSLQCRNC PNCPINGPRHSWEFMR ESEATEILGVDAEL+VNFECVNCHSIHLGVP PAKG+GSE QSWSMAD VVRGTFDSI SWLRVRAV+ RKAN + SR R  SPHE AAE EAAARSVA SSVEEEESVGS D +EAT GREGG+Q APTS EGD  TEADN AAISRAS +L
Sbjct:  202 RSAMKRREPNAGIPWTVGCEAETPLLLNAHRLSLDVERSLQCRNCKPNCPINGPRHSWEFMRGESEATEILGVDAELRVNFECVNCHSIHLGVPFPAKGVGSEVQSWSMADEVVRGTFDSISSWLRVRAVSPRKANSIASRSRDASPHEAAAEGEAAARSVAPSSVEEEESVGSRDVDEATVGREGGMQGAPTSREGDGGTEADNGAAISRASATL 417
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BLAST of mRNA_E_fasciculatus_S2_contig6997.15134.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ4_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 8.020e-75
Identity = 124/151 (82.12%), Postives = 127/151 (84.11%), Query Frame = 1 
Query:   19 SAMKRREPKAGIPWTVGSEAESPLLLEAQRLALDVERSLQCRNCTPNCPINGPRHSWEFMRCESEATEILGVDAELKVNFECVNCHSIHLGVPLPAKGLGSEAQSWSMADRVVRGTFDSIQSWLRVRAVTRRKANRMTSRHRHGSPHETAA 471
            SAMKRREP  GIPWTVG EAE+PLLLEA RL LD+ERSLQCRNC PNCPINGPRHSWEFMRCESEATEILGVDAELKVNFECVNCHSIHLGVPLPAKGLG E QSWSMAD VVRGTFDSI SWLRVRA     A R   R R  +P E AA
Sbjct:  269 SAMKRREPNTGIPWTVGCEAETPLLLEAHRLTLDIERSLQCRNCKPNCPINGPRHSWEFMRCESEATEILGVDAELKVNFECVNCHSIHLGVPLPAKGLGYEVQSWSMADEVVRGTFDSISSWLRVRAGPS-SATRGGRRQRQPAPPEKAA 418
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6997.15134.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.760e-10982.87protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.020e-7582.12protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6997contigE_fasciculatus_S2_contig6997:1904..3263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1360
Hectar predicted targeting categoryother localisation
Exons1
Cds size714
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842356.8728383-UTR-E_fasciculatus_S2_contig6997:1903..19271696842356.8728383-UTR-E_fasciculatus_S2_contig6997:1903..1927Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6997 1904..1927 +
1696842356.8968198-UTR-E_fasciculatus_S2_contig6997:2641..32631696842356.8968198-UTR-E_fasciculatus_S2_contig6997:2641..3263Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6997 2642..3263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842356.88471-CDS-E_fasciculatus_S2_contig6997:1927..26411696842356.88471-CDS-E_fasciculatus_S2_contig6997:1927..2641Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6997 1928..2641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6997.15134.1prot_E_fasciculatus_S2_contig6997.15134.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6997 1928..2641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6997.15134.1

>prot_E_fasciculatus_S2_contig6997.15134.1 ID=prot_E_fasciculatus_S2_contig6997.15134.1|Name=mRNA_E_fasciculatus_S2_contig6997.15134.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=238bp
MKRREPKAGIPWTVGSEAESPLLLEAQRLALDVERSLQCRNCTPNCPING
PRHSWEFMRCESEATEILGVDAELKVNFECVNCHSIHLGVPLPAKGLGSE
AQSWSMADRVVRGTFDSIQSWLRVRAVTRRKANRMTSRHRHGSPHETAAE
EEAAARSVARSSVEEEESVGSADREEATAGREGGVQRAPTSGEGDEATEA
DNEAAISRASESLNTVSEHAKEGMVHTGSKKKSRYAK*
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mRNA from alignment at E_fasciculatus_S2_contig6997:1904..3263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6997.15134.1 ID=mRNA_E_fasciculatus_S2_contig6997.15134.1|Name=mRNA_E_fasciculatus_S2_contig6997.15134.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1360bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6997:1904..3263+ (Ectocarpus fasciculatus EfasUO2)
TGTAATTTTGCCCGCAGGAGTGCGATGAAGCGGAGAGAACCAAAGGCCGG
TATTCCCTGGACTGTTGGCAGCGAGGCTGAGTCACCTCTACTCCTAGAAG
CACAACGACTTGCTCTAGATGTAGAAAGGTCGCTGCAGTGTAGAAACTGC
ACACCTAACTGCCCGATCAATGGGCCACGTCACAGTTGGGAGTTCATGCG
GTGTGAGTCCGAGGCGACGGAAATCCTAGGGGTAGACGCCGAGCTAAAAG
TCAACTTTGAGTGCGTCAATTGCCACTCGATACACCTTGGGGTGCCTTTG
CCTGCTAAGGGGTTGGGTTCTGAAGCCCAATCGTGGTCGATGGCGGATCG
GGTTGTGCGTGGGACTTTTGACAGTATCCAAAGTTGGCTTCGGGTACGTG
CAGTAACCCGCAGAAAGGCGAACAGGATGACGTCTCGTCACCGACATGGT
TCGCCACATGAGACCGCTGCGGAGGAGGAGGCGGCCGCTCGTTCAGTGGC
TCGGAGCAGCGTGGAGGAGGAAGAATCCGTCGGGTCCGCAGACAGGGAAG
AGGCGACGGCGGGGCGTGAGGGGGGGGTGCAACGAGCACCCACATCCGGA
GAAGGGGACGAAGCTACAGAAGCAGACAATGAGGCGGCTATTAGTCGCGC
CTCGGAGTCGTTGAACACAGTGTCCGAGCATGCTAAGGAAGGCATGGTCC
ACACAGGAAGCAAAAAGAAGTCGCGTTATGCCAAGTAGCATCGCATTCCA
AGAGCTACGGAACACGATGTTTCCAAGGTAGGGTAGGCAGTAGTTCGGTA
CGACAACGGAGTATGGTCCAATCGTTTCCGTGGGTTGAGCTGTAGCCAGC
AAGCACCAGGAGAGCATTGTTTTCGCAGGGAAGCCACTACTGTACGTTCC
GATCGTTTCACAAGTTAGGTTAATGTCAACAAACGCAAGGGGTAGGGTAG
ACAGTAGTTCGGTACGACAACGGAGTGTAGTCCAAGTATCGTTTCCAGGT
TTAGTTAGTTGTAGCCAACACACGCAAGGAAGAGGGTTTGCTTCGCAGGG
TAGCCACGATGCGGTGTAGTTCGGTACGACGACGACGGAGTATGGCCCGA
TCGTTTCGACGGGTTTGGTTGTAGCCTACAAACACAAGGACTTCCCGTTG
GCGTACCGAACTACTGCCTACCCAACGAAAACAATACGCTCCTCTTGCGG
TGAAAATCCTGTCAGTCGTCGTCGTTCCGGCGGCGGCGACTCCGGTAGCA
CTTGCACGTGTGCAGTTCTCGGTTGGGCGCGAAGCCTTGACTTCCGATGA
AAGCAGTTGTTTGCTTGCACGAAGCCTTGGCTTGCGGTGAAAATCCTATC
ACTCGTTGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6997:1904..3263+

>mRNA_E_fasciculatus_S2_contig6997.15134.1 ID=mRNA_E_fasciculatus_S2_contig6997.15134.1|Name=mRNA_E_fasciculatus_S2_contig6997.15134.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=714bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6997:1904..3263+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGCGGAGAGAACCAAAGGCCGGTATTCCCTGGACTGTTGGCAGCGA
GGCTGAGTCACCTCTACTCCTAGAAGCACAACGACTTGCTCTAGATGTAG
AAAGGTCGCTGCAGTGTAGAAACTGCACACCTAACTGCCCGATCAATGGG
CCACGTCACAGTTGGGAGTTCATGCGGTGTGAGTCCGAGGCGACGGAAAT
CCTAGGGGTAGACGCCGAGCTAAAAGTCAACTTTGAGTGCGTCAATTGCC
ACTCGATACACCTTGGGGTGCCTTTGCCTGCTAAGGGGTTGGGTTCTGAA
GCCCAATCGTGGTCGATGGCGGATCGGGTTGTGCGTGGGACTTTTGACAG
TATCCAAAGTTGGCTTCGGGTACGTGCAGTAACCCGCAGAAAGGCGAACA
GGATGACGTCTCGTCACCGACATGGTTCGCCACATGAGACCGCTGCGGAG
GAGGAGGCGGCCGCTCGTTCAGTGGCTCGGAGCAGCGTGGAGGAGGAAGA
ATCCGTCGGGTCCGCAGACAGGGAAGAGGCGACGGCGGGGCGTGAGGGGG
GGGTGCAACGAGCACCCACATCCGGAGAAGGGGACGAAGCTACAGAAGCA
GACAATGAGGCGGCTATTAGTCGCGCCTCGGAGTCGTTGAACACAGTGTC
CGAGCATGCTAAGGAAGGCATGGTCCACACAGGAAGCAAAAAGAAGTCGC
GTTATGCCAAGTAG
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