mRNA_E_fasciculatus_S2_contig6996.15133.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6996.15133.1
Unique NamemRNA_E_fasciculatus_S2_contig6996.15133.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6996.15133.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 6.820e-42
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 3 
Query:  153 GVTDTVRGTPPARRARRRPVSFPEQHDAINNTGHPTRRSTLGERKALWKKVAVDLKKLVKGEKAYFSTHGSGLHWVH 383
            GVTDTVRGTPPARRAR RPVSFPEQHDAINNTGHPTRRSTLGERKALWKKVAVDLKKLVKGEKAYFSTHGSGLHWVH
Sbjct:  209 GVTDTVRGTPPARRARGRPVSFPEQHDAINNTGHPTRRSTLGERKALWKKVAVDLKKLVKGEKAYFSTHGSGLHWVH 285
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BLAST of mRNA_E_fasciculatus_S2_contig6996.15133.1 vs.
Match: EsV-1-207 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G321_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.680e-25
Identity = 54/84 (64.29%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:   16 LWKEGRILPDIKSSVYWECSPAFNAGDNPFRFKTKSATRELPASTQASRTPFAEHLRPGALGDAPSASPSSTTPSTILVIPPDA 267
            +WKEGR+LP+IKSSV+WECSPA+N GD+ F  K KSA R LPA T A R PFA HLR  A G  P +  SS+TPST LVIPPD+
Sbjct:    1 MWKEGRMLPEIKSSVFWECSPAYNGGDSLFHSKIKSAARVLPAKTPADRNPFAMHLR-RARG-VPVSFRSSSTPSTTLVIPPDS 82
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BLAST of mRNA_E_fasciculatus_S2_contig6996.15133.1 vs.
Match: EsV-1-207 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG8_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.850e-6
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 3 
Query:  267 STLGERKALWKKVAVDL-KKLVKGEKAYFSTHGSGLHWVHVRL 392
            S+  E++ALWKKVAV+L +KL +GE  Y STHG+G+ W+HVRL
Sbjct:  168 SSDAEKRALWKKVAVELQRKLKRGETVYVSTHGTGVSWLHVRL 210
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6996.15133.1 vs.
Match: EsV-1-207 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN82_ESV1K)

HSP 1 Score: 54.7 bits (130), Expect = 2.980e-6
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  279 ERKALWKKVAVDL-KKLVKGEKAYFSTHGSGLHWVHVRL 392
            E++ALWKKVAV+L +KL +GE  Y STHG+G+ W+HVRL
Sbjct:  155 EKRALWKKVAVELQRKLKRGETVYVSTHGTGVSWLHVRL 193
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6996.15133.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized6.820e-4298.70protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-2072.680e-2564.29n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-2071.850e-660.47n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-2072.980e-664.10n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6996contigE_fasciculatus_S2_contig6996:5491..5924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size434
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-207
Ec32 orthologEc-00_006140.1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842356.8181646-CDS-E_fasciculatus_S2_contig6996:5490..58021696842356.8181646-CDS-E_fasciculatus_S2_contig6996:5490..5802Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6996 5491..5802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842356.837135-UTR-E_fasciculatus_S2_contig6996:5802..59241696842356.837135-UTR-E_fasciculatus_S2_contig6996:5802..5924Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6996 5803..5924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6996.15133.1prot_E_fasciculatus_S2_contig6996.15133.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6996 5491..5802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6996.15133.1

>prot_E_fasciculatus_S2_contig6996.15133.1 ID=prot_E_fasciculatus_S2_contig6996.15133.1|Name=mRNA_E_fasciculatus_S2_contig6996.15133.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=104bp
RQITELWKEGRILPDIKSSVYWECSPAFNAGDNPFRFKTKSATRELPAST
QASRTPFAEHLRPGALGDAPSASPSSTTPSTILVIPPDARRSARGRRCGK
RLR*
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mRNA from alignment at E_fasciculatus_S2_contig6996:5491..5924+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6996.15133.1 ID=mRNA_E_fasciculatus_S2_contig6996.15133.1|Name=mRNA_E_fasciculatus_S2_contig6996.15133.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=434bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6996:5491..5924+ (Ectocarpus fasciculatus EfasUO2)
AGACAAATCACGGAGTTGTGGAAGGAGGGGCGCATCCTCCCGGACATCAA
GAGCAGTGTCTACTGGGAGTGTTCCCCAGCCTTCAACGCTGGCGATAACC
CCTTTCGATTCAAGACCAAGAGCGCCACACGCGAGCTACCCGCAAGCACA
CAGGCGTCACGGACACCGTTCGCGGAACACCTCCGGCCCGGCGCGCTCGG
AGACGCCCCGTCAGCTTCCCCGAGCAGCACGACGCCATCAACAATACTGG
TCATCCCACCCGACGCTCGACGCTCGGCGAGAGGAAGGCGCTGTGGAAAA
AGGTTGCGGTAGATCTGAAGAAGTTGGTGAAAGGAGAAAAGGCGTACTTT
AGCACGCACGGCAGCGGCTTGCACTGGGTGCACGTACGACTGTTGATGTG
TGTTACGCGCTCGATAGTCGACTTTTATTTTGTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6996:5491..5924+

>mRNA_E_fasciculatus_S2_contig6996.15133.1 ID=mRNA_E_fasciculatus_S2_contig6996.15133.1|Name=mRNA_E_fasciculatus_S2_contig6996.15133.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6996:5491..5924+ (Ectocarpus fasciculatus EfasUO2)
AGACAAATCACGGAGTTGTGGAAGGAGGGGCGCATCCTCCCGGACATCAA
GAGCAGTGTCTACTGGGAGTGTTCCCCAGCCTTCAACGCTGGCGATAACC
CCTTTCGATTCAAGACCAAGAGCGCCACACGCGAGCTACCCGCAAGCACA
CAGGCGTCACGGACACCGTTCGCGGAACACCTCCGGCCCGGCGCGCTCGG
AGACGCCCCGTCAGCTTCCCCGAGCAGCACGACGCCATCAACAATACTGG
TCATCCCACCCGACGCTCGACGCTCGGCGAGAGGAAGGCGCTGTGGAAAA
AGGTTGCGGTAG
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