mRNA_E_fasciculatus_S2_contig699.15128.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig699.15128.1
Unique NamemRNA_E_fasciculatus_S2_contig699.15128.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig699.15128.1 vs.
Match: ADF-H (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEM3_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 4.440e-86
Identity = 140/145 (96.55%), Postives = 140/145 (96.55%), Query Frame = 1 
Query:  115 MQVGEAKALHTTKRSSGIDVSDPCLAEAWASIRTDGEPQTNWCAFTYAEGSNSVINLLGSGSGGVSELCSTLLDSMVAFCGVRVGDDKGSARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASGGDHDFSSVEDLSAASVFQ 549
            MQVGEAKALHTTKRSSGIDVSD  LAEAWASIRTDGEPQTNWCAFTYAEGSNSVI LLGSG GGVSELCSTLLDSMVAFCGVRVGDDKGSARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASGGDHDFSSVEDLS ASVFQ
Sbjct:    1 MQVGEAKALHTTKRSSGIDVSDASLAEAWASIRTDGEPQTNWCAFTYAEGSNSVIKLLGSGIGGVSELCSTLLDSMVAFCGVRVGDDKGSARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASGGDHDFSSVEDLSVASVFQ 145
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BLAST of mRNA_E_fasciculatus_S2_contig699.15128.1 vs.
Match: ADF-H (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLE6_9STRA)

HSP 1 Score: 119 bits (299), Expect = 6.150e-27
Identity = 63/124 (50.81%), Postives = 86/124 (69.35%), Query Frame = 1 
Query:  115 MQVGEAKALHTTKRSSGIDVSDPCLAEAWASIRTDGEPQTNWCAFTYAEGSNSVINLLGSGSGGVSELCSTLLDSMVAFCGVRVGDDKGSARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEG 486
            MQVG+AKALHTT+RSSG+DVS P LA AW  +R+  +  ++WC F Y  G N+ I +  +GS G   L S+L DSM A+ G+RV    GS +F R+ F+G E+ GMK+ +A+L +NAVF +FEG
Sbjct:    1 MQVGDAKALHTTQRSSGLDVSSPELAAAWQKVRSKSD--SHWCLFGYGPGGNTQIVVTAAGSDGFEGLRSSLTDSMAAWAGLRVSV-LGSTKFVRLAFIGTEIAGMKRAKASLHRNAVFHLFEG 121
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BLAST of mRNA_E_fasciculatus_S2_contig699.15128.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Y3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.110e-19
Identity = 56/147 (38.10%), Postives = 84/147 (57.14%), Query Frame = 1 
Query:  115 MQVGEAKALHTTKRSSGIDVSDPCLAEAWASIRTDGEPQTNWCAFTYAEGSNSVINLLGSGSGGVSELCSTLLDSMVAFCGVRVGDDKGSARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASGGDHDFSSVEDLSAASVFQ*I 555
            MQ GEAKALHT  +SSG++VS+  + +AW + R + +    WC F+Y EG +  + +   G+ G   + ++  +  VAFCG     D G+ +  R+ F+GE VGGMK+G+A + KNAVF    G S  D   +S+ DL      + I
Sbjct:    9 MQAGEAKALHTRTQSSGLNVSEE-VQQAWEAFRAE-DSLLQWCWFSYEEGGSKKVVVKEIGNTGYDGMVASFSEDDVAFCGFSANVD-GNKKLFRVFFIGENVGGMKRGKAGMHKNAVFDKMPGCS-ADVVANSLSDLEREKTIEFI 151
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BLAST of mRNA_E_fasciculatus_S2_contig699.15128.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MGN3_ALECA)

HSP 1 Score: 79.7 bits (195), Expect = 6.590e-14
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:  151 KRSSGIDVSDPCLAEAWASIRTDGEPQTNWCAFTYAEGSNSVINLLGSGSGGVSELCSTLLDSMVAFCGVRVGDDKGSARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASG 495
            K SSG+DVSDP +AEAWA +RTD + +T W    Y EG  S + +  SG+GG  EL +++ D  + F G+R      + +F  ++ +GE+ G M +GRAA  KNA     +G  G
Sbjct:   20 KVSSGLDVSDPGIAEAWAKVRTDSDAET-WMLLEY-EG-KSKLKVRASGAGGAEELLASITDDQILFGGLRTK----AGKFICLMCMGEDAGAMARGRAAAHKNAAVNALDGTIG 127
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BLAST of mRNA_E_fasciculatus_S2_contig699.15128.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVQ3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.700e-5
Identity = 38/128 (29.69%), Postives = 61/128 (47.66%), Query Frame = 1 
Query:  121 VGEAKALHTTKRSSGIDVSDPCLA---EAWASIRTDGEPQTNWCAFTYAEGSNSVINLLGSGSGGVSELCSTLLDSMVAFCGVRVGDDKGSARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASG 495
            + E  A      + G+  +D  +A   + WA +R D      W  +           L   GSG   EL + L ++ V FCG+  G    + +F+ +L+VG +VG +K+ +A L K+AVF    GA+G
Sbjct:    1 MAETYARMDKSSADGMKTADAAVAAVVDGWARVRDDSMSNVEWVVYVL---DGKTYRLAAEGSGR-PELVAALDEAAVNFCGLLDGPAN-ARKFYHLLYVGADVGIIKRNKAQLQKSAVFNAMPGAAG 123
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BLAST of mRNA_E_fasciculatus_S2_contig699.15128.1 vs.
Match: Actin (depolymerizing protein n=1 Tax=Mytilinidion resinicola TaxID=574789 RepID=A0A6A6YYJ6_9PEZI)

HSP 1 Score: 55.5 bits (132), Expect = 1.810e-5
Identity = 32/105 (30.48%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:  166 IDVSDPCLAEAWASIRTDGEPQTNWCAFTYAEGSNSVINLLGSGSGGVSELCSTLLDSMVAFCGVRV--GDDKGSAR--FHRILFVGEEVGGMKKGRAALAKNAV 468
            +++  P +  A+AS+R +  P+ NW   +YA  ++  + L  +GSGG+ EL + LLD    +  +RV   +D  S R  F  I+++GE    M+K +       V
Sbjct:    1 MNIDTPAIQAAYASVRAESSPE-NWLLLSYASPTSDALTLTATGSGGLEELKTHLLDDQAQYAYLRVEYANDSESTRVKFALIIWIGERTRVMRKAKVGFQSGEV 104
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BLAST of mRNA_E_fasciculatus_S2_contig699.15128.1 vs.
Match: Putative (actin binding protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A8W2_9MYCE)

HSP 1 Score: 58.9 bits (141), Expect = 2.250e-5
Identity = 41/131 (31.30%), Postives = 70/131 (53.44%), Query Frame = 1 
Query:  172 VSDPCLAEAWASIRTDGEPQTNWCAFTYAEGSNSVINLLGSGSGGVSELCSTLLDSMVAFCGVRVGD---DKGSARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASGGDHDFSSVEDLSAASVFQ*I 555
            +++  +  A A ++ +  P T+W   ++    +  + L+GSGSGGVSEL  +  D +V F  VR  D   D  + +F  ILF+G++VG ++KGR ++    V   F G+   D   ++  ++S   V Q I
Sbjct:    8 INETEIKAAIADLKNNDTP-TDWVLLSFESPKSQKVKLVGSGSGGVSELVESFQDDVVGFSLVRKIDKIDDSETVKFAFILFIGDKVGILQKGRISVTSGGVKDCF-GSFHVDFQITNKSEISDQIVIQKI 136
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BLAST of mRNA_E_fasciculatus_S2_contig699.15128.1 vs.
Match: Hypothetical (protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HCW9_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 8.380e-5
Identity = 42/128 (32.81%), Postives = 61/128 (47.66%), Query Frame = 1 
Query:  130 AKALHTTKRS---SGIDVSDPCLAEAWASIRTDGEPQTNWCAFTYAEGSNSVINLLGSGSGGVSELCSTLLDSMVAFCGVRV--GDDKGSARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASGG 498
            AK L+  + +   S +D+SDP +A AWA           W A  Y EG  + +  L SG+ G   L + L +  V +   RV    +  +++F  +  +GE  GGM KGRA      V A  EG +GG
Sbjct:    7 AKVLNAGRMNASASAVDMSDPEIAAAWAECVGSAPQVGAWIALGY-EG-KAKLKRLASGTDGYRGLRAHLAEDAVVYGAFRVTTAGESTASKFTFVTSIGENAGGMVKGRATAHAQCVEAGLEGTAGG 132
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig699.15128.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
ADF-H4.440e-8696.55domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
ADF-H6.150e-2750.81domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical3.110e-1938.10protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical6.590e-1440.87protein n=1 Tax=Alexandrium catenella TaxID=2925 R... [more]
Hypothetical1.700e-529.69protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Actin1.810e-530.48depolymerizing protein n=1 Tax=Mytilinidion resini... [more]
Putative2.250e-531.30actin binding protein n=1 Tax=Tieghemostelium lact... [more]
Hypothetical8.380e-532.81protein n=1 Tax=Prymnesium polylepis TaxID=72548 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig699contigE_fasciculatus_S2_contig699:16624..19425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score275.8
Seed ortholog evalue1.2e-71
Seed eggNOG ortholog2880.D8LEM3
Model size2038
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2E604@1,2SCRT@2759
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-23_002470.1
Cds size438
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842356.3104854-UTR-E_fasciculatus_S2_contig699:16623..181091696842356.3104854-UTR-E_fasciculatus_S2_contig699:16623..18109Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig699 16624..18109 -
1696842356.360478-UTR-E_fasciculatus_S2_contig699:19311..194251696842356.360478-UTR-E_fasciculatus_S2_contig699:19311..19425Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig699 19312..19425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842356.324676-CDS-E_fasciculatus_S2_contig699:18109..182411696842356.324676-CDS-E_fasciculatus_S2_contig699:18109..18241Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig699 18110..18241 -
1696842356.3375034-CDS-E_fasciculatus_S2_contig699:18402..185611696842356.3375034-CDS-E_fasciculatus_S2_contig699:18402..18561Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig699 18403..18561 -
1696842356.3492856-CDS-E_fasciculatus_S2_contig699:19164..193111696842356.3492856-CDS-E_fasciculatus_S2_contig699:19164..19311Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig699 19165..19311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig699.15128.1prot_E_fasciculatus_S2_contig699.15128.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig699 18110..19311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig699.15128.1

>prot_E_fasciculatus_S2_contig699.15128.1 ID=prot_E_fasciculatus_S2_contig699.15128.1|Name=mRNA_E_fasciculatus_S2_contig699.15128.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=146bp
MQVGEAKALHTTKRSSGIDVSDPCLAEAWASIRTDGEPQTNWCAFTYAEG
SNSVINLLGSGSGGVSELCSTLLDSMVAFCGVRVGDDKGSARFHRILFVG
EEVGGMKKGRAALAKNAVFAVFEGASGGDHDFSSVEDLSAASVFQ*
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mRNA from alignment at E_fasciculatus_S2_contig699:16624..19425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig699.15128.1 ID=mRNA_E_fasciculatus_S2_contig699.15128.1|Name=mRNA_E_fasciculatus_S2_contig699.15128.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2802bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig699:16624..19425- (Ectocarpus fasciculatus EfasUO2)
GCAGCCTCCGTGGGTTCCAAGCAGAGGGTGTACGGTCCGTAGCTTCAAGC
TTTTCGCGCTGCGAAAGAAGTTTGCGGTCACGGCACGAGCTGTTCCAAAG
CCTCCCACCTGAAGATGCAAGTGGGGGAAGCCAAAGCCCTCCACACGACG
AAGCGGTCGTCTGGCATTGATGTTTCTGACCCCTGCCTGGCGGAAGCTTG
GGCGAGCATTCGAACGGACGGCGAGCCTCAGACGAATTGGTGTGCCTTCA
CATACGCCGAGGTTTGGAACGTGTTCATTGATTGATGCGTTTAGTTACTG
CAATGGCATTTTTGTGCCCGCTTTCAAAAATCACGTGTAGTATAAGTACT
TGGAGCATTGTCGTGCGGTAAGCACACACCCGCCTGCCTCTCGCGGTATC
CACGATCTTGGCAATGGGTAGCTATGCATGCGACTTGGCAAAAAGCCTTC
TCTTTTTATTTCTGTGCATCTGATCATGTTGTCGCGAAATGGGCCCAGCA
CTCCTCGTTATCTCGTCAAGAAGTGTGTTAGGTGGAAAGTTCGCCGCACA
TGCTACCGGCAACCTACTCTTGAAACTTGAAACATTGTCGTGTCGGACCA
GATGAACGTTGTTTCAAATCAAGCAATCTTGGCTTCTCGAGTTTGTGAAA
GGCGTCGCGGTCGAATTTGCTGTGGGCGCCAGTATCTCGACAAGTGTAGT
CGCCCTGGAACTGCAATGAGTGCTACTCCGCATTGCCTCACTCCCTCAGA
GGCCCGCGACTGATGCGCTGTGACTCTGAAGACCAGCGAACCCGGCAACG
CCGCCCCCGCCAATCAAACAATCAAACACGGTGTCGGTTTCCTTCACTCT
ATGTTTGCCCCCAGGGATCGAACTCAGTAATAAATCTCCTCGGGTCAGGG
TCCGGCGGGGTATCGGAGCTCTGTTCCACCCTCCTTGATTCTATGGTGGC
CTTTTGTGGAGTCAGGGTGGGCGACGATAAAGGATCAGCTCGATTCCATC
GCATCCTATTCGTCGGGGAAGAGGTAAGTCGCCGTCATCGTGCTGCCATA
GGAGGAGGTTTGTTTGCTCGGTCAATATGCCGCACTTCAATATGAGTTTT
GGTCTAGTCCGTTGTTTTCGTTAACTGTCGCTGCTCTCTGGTCTTCTCCC
GACAAGCCATCACATGTTGTGCTTTATACGCTAGGTCGGTGGCATGAAGA
AAGGGCGCGCAGCTCTCGCGAAAAACGCCGTGTTTGCGGTATTCGAGGGA
GCATCGGGCGGGGATCATGATTTCAGCTCCGTCGAAGATTTGTCAGCGGC
GTCGGTGTTCCAATAAATATGCAGCTGCTACGTTGGACTTTACGCTGAGC
GTTTTCATGCGGACTGTGGTCGATGTCGAACAGGGAAGACCTTGGAATCT
CCATTGAGAAATGTCGTCTTATAGATGTTGCTTGCGGGCATCACGAGTGT
AGGCTTGGTTGTGGACGTTGCGGATACAGCTTATGGGGTGGGAAGCTGGC
AGTCCTGCCGAGCCCGTGGTCCTGCCCAACGGTGTGATTTTGGATTCAGG
TTCTCTCACCTCACTGTTTTCTACGATGCGGGTGGAAATAGAAGTTGACC
ATCATGGGCTGCCGGCAGCACCGTGGTTCTGCATCAAGTTCAGGTGTTTC
CCGTCCGTTTGCAATCCGGAGTATATCCACTCGTCATACGCGTGTCTGCC
GTCCTACCTAGTTGGAATATTGGGGCTTTTGAGGTAGATGATGGGGGAGG
TCCGTCTCATGAGGCTGTGAAGTTACCTAGTTAGCACGTGACATTTTCCT
TCGTTTTCTCGCCGCTGTCAAATATTTGCAATGCGATGGAGAGCAAGAAC
TCGACTACATCGCGTGAGTAGGACGTCGCTTGTCCCTTGAATATTGCCTG
GCTGTCCATCGTCGCATGTCGTCCCGCTCGTGCTATCCGCAAGTCTTGGA
GGGAAAATCGATGCGAGGCGTTGGCTGGAATGGATATCTGAGTTTTTGTT
GAATGCACCTTTGCAGCTTGATAGGACACGCATGATACCTTTGGCTAGAG
CGTGGGTGTTCCTCACGCGCACATAAATTCAACATCAAAGCTTCGTGTCC
TGTTCAAAGCGGACTACTTGCACACGTACTGTCTTATTTTTCAGTTGTTC
ATAGCACTACTTTCGTGCGGATAGCCCAACAGTTCCTTTCACTGTGGGTC
GTGCCGTTTCCATCTGATATTTTGGAATATGTTTTAACCGTGGGCCGTAC
TGCGCCGAGACTAGCTGCCCTTCAGCCTCTTGAAACGGCGGCCGTTTCTC
AGGGGAGCATTGCGACGACGTATTCGATAGACCTATGGTGTCCGGTGCAC
ACCGTCGTGCTCTCGCCATCATGAGGTTGCTACACACGGTTGTCGAGGAA
GACATTTGGTGAACGTTTGTTTTCCTCTATTTACTACTGTAGAGCGGGTG
CCATTGAATGTTTGAGGGTTTAATTCTTGCCCGCGTGGAAGCCAAGTGTG
CAATCTCTTCACATCGTTTGTTTTAGAAAACGTTTTGTCCACCGCAGTGG
CTGTAGTCAACGGCCACGCCATGGATTAACACATCGTCGGTACCGCACTC
CAATATCGGTTCGGGGGATCCCTTACGAAAGTCATGGGGAAAAGAACACG
AAACAACAGCTCGAACGCACATTTTCATTTCATGGCATCGGCTATGGCGT
TTTGAACTGCTGTGTCCGCGATGTAAACAAATCAGGAGATGGCGTCGCAG
TTTTGTAAGTACTGGGCGAAGGTTCATTGCGAGCTGCGTGCATTTCGCCA
TA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig699:16624..19425-

>mRNA_E_fasciculatus_S2_contig699.15128.1 ID=mRNA_E_fasciculatus_S2_contig699.15128.1|Name=mRNA_E_fasciculatus_S2_contig699.15128.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=438bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig699:16624..19425- (Ectocarpus fasciculatus EfasUO2)
ATGCAAGTGGGGGAAGCCAAAGCCCTCCACACGACGAAGCGGTCGTCTGG
CATTGATGTTTCTGACCCCTGCCTGGCGGAAGCTTGGGCGAGCATTCGAA
CGGACGGCGAGCCTCAGACGAATTGGTGTGCCTTCACATACGCCGAGGGA
TCGAACTCAGTAATAAATCTCCTCGGGTCAGGGTCCGGCGGGGTATCGGA
GCTCTGTTCCACCCTCCTTGATTCTATGGTGGCCTTTTGTGGAGTCAGGG
TGGGCGACGATAAAGGATCAGCTCGATTCCATCGCATCCTATTCGTCGGG
GAAGAGGTCGGTGGCATGAAGAAAGGGCGCGCAGCTCTCGCGAAAAACGC
CGTGTTTGCGGTATTCGAGGGAGCATCGGGCGGGGATCATGATTTCAGCT
CCGTCGAAGATTTGTCAGCGGCGTCGGTGTTCCAATAA
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