mRNA_E_fasciculatus_S2_contig6989.15126.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6989.15126.1
Unique NamemRNA_E_fasciculatus_S2_contig6989.15126.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6989.15126.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF9_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.910e-48
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:   49 MSARLSGVQREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRVGNKKLKLLNMPGVKAAAGITVARR 312
            MSARLSGVQREVN+LYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESV RTDFRTIEHLLR GNKKLKLL MPGVKAAAGITV RR
Sbjct:    1 MSARLSGVQREVNKLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVARTDFRTIEHLLRAGNKKLKLLKMPGVKAAAGITVVRR 88
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BLAST of mRNA_E_fasciculatus_S2_contig6989.15126.1 vs.
Match: Heat (shock protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX23_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 3.770e-44
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 1 
Query:   64 SGVQREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRVGNKKLKLLNMPGVKAAAGITVARR 312
            S  +REVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLR GNKKLKLL MPGVKAAAGITVARR
Sbjct:   52 SPTKREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRAGNKKLKLLKMPGVKAAAGITVARR 134
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BLAST of mRNA_E_fasciculatus_S2_contig6989.15126.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZYE5_TRICV)

HSP 1 Score: 72.4 bits (176), Expect = 1.880e-13
Identity = 49/111 (44.14%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   55 ARLSGVQREVNQLYRLLLRAARVKD---------GGEWA----------------GSTTELVRAEFRAQAESVGRTDFRTIEHLLRVGNKKLKLLNMPGVKAAAGITVARR 312
            ARLSG+QR+V  LYR +LR A  KD         GGE+                  +TT   R+EFR +A S+ R DFRTIEH++R G K++KLL MPGV +  G   ARR
Sbjct:    5 ARLSGLQRQVLALYRSVLREAARKDRSAASNRNDGGEYFLVLLSTDKCPSSPPGDATTTSYARSEFRKKAASIPRNDFRTIEHMIRWGQKQIKLLRMPGV-SFVGSPNARR 114
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BLAST of mRNA_E_fasciculatus_S2_contig6989.15126.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3W0_HETAK)

HSP 1 Score: 71.6 bits (174), Expect = 4.340e-13
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   58 RLSGVQREVNQLYRLLLRAARVKDGGEWAG--STTELVRAEFRAQAESVGRTDFRTIEHLLRVGNKKLKLLNMPGVKAAAGIT 300
            RLSG+Q+EV  LYR  LR AR KD G  +   S  E  R+EFR QA  V ++DF+TIEH++R G K++KL  MPG +     T
Sbjct:   34 RLSGLQQEVLALYRQCLRVARKKDLGSSSNVRSLYEYCRSEFREQASKVKKSDFQTIEHMIRHGKKQMKLAAMPGFQGMTHFT 116
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BLAST of mRNA_E_fasciculatus_S2_contig6989.15126.1 vs.
Match: KLTH0F15576p (n=2 Tax=Lachancea TaxID=300275 RepID=C5DJD6_LACTC)

HSP 1 Score: 64.7 bits (156), Expect = 7.000e-11
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   49 MSARLSGVQREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRVGNKKLKLLNMPGVK 282
            M+ RLSG+QREV Q+YR  +RAA  K         T  +R EFR Q + + R DF TIEHLLRVG+++L++ + P VK
Sbjct:    1 MAKRLSGLQREVLQMYRQCIRAAHDKPKANQPNFVTH-IRKEFR-QYQDLPRKDFSTIEHLLRVGHRRLEMYSQPEVK 76
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BLAST of mRNA_E_fasciculatus_S2_contig6989.15126.1 vs.
Match: Complex (1 protein-domain-containing protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5FAV1_9PEZI)

HSP 1 Score: 64.3 bits (155), Expect = 1.440e-10
Identity = 40/78 (51.28%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:   49 MSARLSGVQREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRVGNKKLKLLNMPGVK 282
            M  RLSG+QREV  LYR  LR  + K   E   +  E  R EFR Q   + + DF TIEHLLRVG KKL+L + PG+K
Sbjct:    1 MMPRLSGIQREVLSLYRSCLRMIKEKPA-ESQQNFREYARHEFR-QNLGLNKKDFATIEHLLRVGQKKLELYSQPGIK 76
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BLAST of mRNA_E_fasciculatus_S2_contig6989.15126.1 vs.
Match: Complex (1 protein-domain-containing protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5ECR0_9PEZI)

HSP 1 Score: 60.8 bits (146), Expect = 2.140e-9
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   58 RLSGVQREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRVGNKKLKLLNMPGVK 282
            RLSG+QR+V  LYR  LR  + K   E   +  + VR EFR     + + DF TIEHLLRVG KKL+L + PG+K
Sbjct:    3 RLSGIQRDVLSLYRSCLRMIKKKPA-ESQHNFRDYVRHEFRHNF-GLNKKDFATIEHLLRVGRKKLELYSQPGIK 75
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BLAST of mRNA_E_fasciculatus_S2_contig6989.15126.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Morchella conica CCBAS932 TaxID=1392247 RepID=A0A3N4KNK3_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 4.120e-9
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:   64 SGVQREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRVGNKKLKLLNMPGVK 282
            +G+QR+V  LYRL LR AR K   +   +     R EFRA  + + + DF TIEHLLRVG KKL+  + PG+K
Sbjct:    4 TGIQRDVLALYRLCLREARKKPS-DARENFRNFARDEFRAHLD-IKKKDFATIEHLLRVGQKKLETYSQPGIK 74
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BLAST of mRNA_E_fasciculatus_S2_contig6989.15126.1 vs.
Match: LAFE_0F03752g1_1 (n=1 Tax=Lachancea fermentati TaxID=4955 RepID=A0A1G4MEN0_LACFM)

HSP 1 Score: 60.1 bits (144), Expect = 4.230e-9
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   49 MSARLSGVQREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRVGNKKLKLLNMPGVK 282
            MS R+SG+QREV QLYR  +RAA  K          + +R+EF  Q + + R +F TIEHLLRVG+K+L++ + P +K
Sbjct:    1 MSRRVSGLQREVLQLYRQCIRAAHTKPKDNQP-RFLKYIRSEF-GQYKDLPRKEFSTIEHLLRVGHKRLEMYSAPELK 76
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6989.15126.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2N7G0_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 4.550e-9
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   58 RLSGVQREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRVGNKKLKLLNMPGVKAAA 291
            RLSG+QR+V  LYR  LRA R K   E   +   + R EF+    S+ + DF TIEHLLRVG +KL++ + PGVK  A
Sbjct:    6 RLSGIQRDVLSLYRKCLRAIREKPV-EAQPNFRLVARREFQKNL-SISKKDFVTIEHLLRVGQRKLEMYSQPGVKNIA 81
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6989.15126.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Complex1_LYR_dom2.910e-4894.32domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Heat3.770e-4493.98shock protein, putative n=1 Tax=Ectocarpus silicul... [more]
Hypothetical1.880e-1344.14protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Hypothetical4.340e-1349.40protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
KLTH0F15576p7.000e-1148.72n=2 Tax=Lachancea TaxID=300275 RepID=C5DJD6_LACTC[more]
Complex1.440e-1051.281 protein-domain-containing protein n=1 Tax=Sphaer... [more]
Complex2.140e-949.331 protein-domain-containing protein n=1 Tax=Sphaer... [more]
Complex1_LYR_dom4.120e-947.95domain-containing protein n=1 Tax=Morchella conica... [more]
LAFE_0F03752g1_14.230e-946.15n=1 Tax=Lachancea fermentati TaxID=4955 RepID=A0A1... [more]
Complex1_LYR_dom4.550e-948.72domain-containing protein n=1 Tax=Ascodesmis nigri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6989contigE_fasciculatus_S2_contig6989:5092..6718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeFungi
Stop1
Start1
Seed ortholog score65.1
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog381046.XP_002554862.1
Model size492
KEGG koko:K18167
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031974,GO:0033108,GO:0034552,GO:0034553,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0065003,GO:0070013,GO:0071840
Exons2
EggNOG free text desc.Belongs to the complex I LYR family
EggNOG OGs3A8HH@33154,3P6N8@4751,3QYKQ@4890,3RVC2@4891,3S21U@4893,KOG4620@1,KOG4620@2759
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-10_003990.1
Cds size267
COG Functional cat.S
Best tax levelSaccharomycetaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842356.106406-UTR-E_fasciculatus_S2_contig6989:5091..51391696842356.106406-UTR-E_fasciculatus_S2_contig6989:5091..5139Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6989 5092..5139 +
1696842356.140367-UTR-E_fasciculatus_S2_contig6989:6541..67181696842356.140367-UTR-E_fasciculatus_S2_contig6989:6541..6718Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6989 6542..6718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842356.1182985-CDS-E_fasciculatus_S2_contig6989:5139..52771696842356.1182985-CDS-E_fasciculatus_S2_contig6989:5139..5277Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6989 5140..5277 +
1696842356.1291058-CDS-E_fasciculatus_S2_contig6989:6412..65411696842356.1291058-CDS-E_fasciculatus_S2_contig6989:6412..6541Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6989 6413..6541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6989.15126.1prot_E_fasciculatus_S2_contig6989.15126.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6989 5140..6541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6989.15126.1

>prot_E_fasciculatus_S2_contig6989.15126.1 ID=prot_E_fasciculatus_S2_contig6989.15126.1|Name=mRNA_E_fasciculatus_S2_contig6989.15126.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=89bp
MSARLSGVQREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESV
GRTDFRTIEHLLRVGNKKLKLLNMPGVKAAAGITVARR*
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mRNA from alignment at E_fasciculatus_S2_contig6989:5092..6718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6989.15126.1 ID=mRNA_E_fasciculatus_S2_contig6989.15126.1|Name=mRNA_E_fasciculatus_S2_contig6989.15126.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1627bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6989:5092..6718+ (Ectocarpus fasciculatus EfasUO2)
CAGCAGCAGCAGCAGAGGACCTTTGTGTCCGTAGGGGTGTGAGCCGGGAT
GTCTGCGAGGCTCTCTGGGGTTCAGCGGGAAGTCAATCAGCTCTACCGCC
TTCTGCTGCGGGCGGCAAGGGTTAAAGATGGCGGAGAATGGGCGGGCAGC
ACGACCGAGCTCGTCAGGGCAGAGTTCCGTGCACAGGTACACTATTACAT
GTAGAAGTCTACAAGTCGGTGTGTGGCGCTGGTGTCCAACACTTGCGAGA
AGAAGAGTGTCAGGAGCCAGGGGAAGACTGTAGTAGCAGTCCAACCACTC
CTTGGCAGATACATGTTGCGACACGAAAGACACTCCTTTCTGCGCTTGCT
GCTTTGCTGTACATTAGATGCGAGTTAGCCCTACACTGCTACTTGCTCAC
GAATGTAAGTCGTGTGTACAGCAGCAGCAGTTCTGCGGTAGTTCGTCTGT
AGTCTACAGCAGAGGATGTCCCGTATATTGCCGGTTGAATAGTGCTGGTA
CAGTGCGGGCCACATCTGTGGGCACGAGTGTCCACTCCTATACTAAAACC
TACATGTCCCTGTTCTGAATAGATAATGCCGGTGTCCGGTATAGTGACGG
TCAAACCTCTGGGCACTACCGGCTCTATGTCGGGACACCTTACTTTACAA
TGTATACCAGAACGAGTGGGTGCCTCGCTACACCTTCTGGTCGACCCAGC
ACCAAGCCCGAACCATTACCGTTGCTCGTCAGCAGTCAGTCTATGTAAGC
GAAAATATATAAAGTAGTGCTGACAATTAGTCTCAACCGCCACCCGCGGT
GGATGGCATCTTGATCGGTCCGTACATGCTGCTGCGCACGCAGGTGGAAA
CTATTGTACTAAACACCTTAAGAAAGTTTAATTTGAAAGTACTTGTAGCA
TAGGATATGACGATACACCGCCTCCCCGGTTGTACTTGGACACGTGTTGT
ACAACAACAGCAGAGGCATCCACTTCTGGCGCTCTGTTGGGGCCTTGTTA
TTTTCTTGTTTTCCGGTACTGCCGATTGTGGATTTTCATGTCTCTCCGCC
CTCCGGCCGCTGGCCGGCGTTCTCTGCGTGATCCCCCCGGCGACCCTGCT
GACCGCGTTGACGGCGCGGTGCTCCCACTCACGAGCATTTTAGACGGTGA
CGTAATTAACGACAGCTACTGCTGCTGCTGCTGCTGCAGGTAGGCAAGGT
CCTCAAGACACACGGTCTACTTGGGCCCTTTTTTTGTGCTAGAGCACGAG
TGCCGCTGAGTTTGATGACACATGCATGATAACTGGAACCACCATGCTCT
CGTTGCCGGATTGCCTTGAAGGCGGAGTCCGTCGGGCGAACCGATTTCCG
CACCATCGAGCACCTCCTGCGCGTCGGAAACAAGAAGCTCAAGCTCTTGA
ACATGCCCGGTGTCAAGGCGGCGGCGGGCATCACCGTGGCACGCCGATGA
CACGCGGTAGCCCTCCGGCCCTGTGAACCGACAATATCCCGCTGGCGGTG
CCGATGGCAGACACACCCTCCATCAAGCGCAAGATTGGTTAGCGTGGACA
ACGTGTGGTGGGGGGGGATTGGCTGGTTGCGGATATGAGGGTGGGGTGTC
GAAGGGCAAGTTTTTTTTTGGTGCGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6989:5092..6718+

>mRNA_E_fasciculatus_S2_contig6989.15126.1 ID=mRNA_E_fasciculatus_S2_contig6989.15126.1|Name=mRNA_E_fasciculatus_S2_contig6989.15126.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6989:5092..6718+ (Ectocarpus fasciculatus EfasUO2)
ATGTCTGCGAGGCTCTCTGGGGTTCAGCGGGAAGTCAATCAGCTCTACCG
CCTTCTGCTGCGGGCGGCAAGGGTTAAAGATGGCGGAGAATGGGCGGGCA
GCACGACCGAGCTCGTCAGGGCAGAGTTCCGTGCACAGGCGGAGTCCGTC
GGGCGAACCGATTTCCGCACCATCGAGCACCTCCTGCGCGTCGGAAACAA
GAAGCTCAAGCTCTTGAACATGCCCGGTGTCAAGGCGGCGGCGGGCATCA
CCGTGGCACGCCGATGA
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