mRNA_E_fasciculatus_S2_contig6977.15116.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6977.15116.1
Unique NamemRNA_E_fasciculatus_S2_contig6977.15116.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6977.15116.1 vs.
Match: Kinesin (light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.570e-10
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 GKYAEADPLYLRAIEIGEKTLGPNHPRLATRLSNRGVLLQRQG 129
            G+  EADPLYLRAIE+GEK LGP+HP LAT L+N+ VLL++QG
Sbjct:    8 GEDTEADPLYLRAIEVGEKKLGPDHPDLATWLNNQAVLLRKQG 50
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BLAST of mRNA_E_fasciculatus_S2_contig6977.15116.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 4.730e-10
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 GKYAEADPLYLRAIEIGEKTLGPNHPRLATRLSNRGVLLQRQ 126
            GKYAEADPLYLRAIEIGE TLGP+HP LAT+L+NR  LL  Q
Sbjct:  613 GKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLLGSQ 654
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BLAST of mRNA_E_fasciculatus_S2_contig6977.15116.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 8.900e-10
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 GKYAEADPLYLRAIEIGEKTLGPNHPRLATRLSNR 105
            GKYAEADPLYLRAIEIGEK LGP+HP LATRL+NR
Sbjct:  169 GKYAEADPLYLRAIEIGEKMLGPDHPDLATRLNNR 203
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BLAST of mRNA_E_fasciculatus_S2_contig6977.15116.1 vs.
Match: TPR (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.560e-9
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 GKYAEADPLYLRAIEIGEKTLGPNHPRLATRLSNR 105
            GKY E DPLYLRAIEIGEKTLGP+HP LAT L+NR
Sbjct:   51 GKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNR 85
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BLAST of mRNA_E_fasciculatus_S2_contig6977.15116.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L045_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.770e-9
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 GKYAEADPLYLRAIEIGEKTLGPNHPRLATRLSNRGVLLQRQ 126
            GKYAEADPLYLRAI+IG+K LGP+HP LA  L+NR  LL++Q
Sbjct:   10 GKYAEADPLYLRAIDIGKKMLGPDHPDLAAWLNNRAGLLKKQ 51
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BLAST of mRNA_E_fasciculatus_S2_contig6977.15116.1 vs.
Match: Reverse (transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.690e-8
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    7 YAEADPLYLRAIEIGEKTLGPNHPRLATRLSNRGVLLQRQG 129
            +   DPL+LRAIEIGEKTLGP+HP LATRL+NR  LL+ QG
Sbjct:  254 FTSQDPLFLRAIEIGEKTLGPDHPDLATRLNNRAELLRAQG 294
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6977.15116.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.600e-7
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 GKYAEADPLYLRAIEIGEKTLGPNHPRLATRLSNRGVLLQRQ 126
            GK+AEADPLYLRAIE+ EK LG +HP LAT ++NR  LL+ Q
Sbjct:  341 GKHAEADPLYLRAIEVAEKMLGRDHPDLATSINNRAELLRAQ 382
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BLAST of mRNA_E_fasciculatus_S2_contig6977.15116.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLA4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.830e-7
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 GKYAEADPLYLRAIEIGEKTLGPNHPRLATRLSNRGVLLQRQG 129
            GKY EA PL  RAIEIGE++LGPNHP L + L+N  VLL  QG
Sbjct:    1 GKYDEAKPLVQRAIEIGEESLGPNHPDLVSWLNNLAVLLINQG 43
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6977.15116.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLU4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.090e-6
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    1 GKYAEADPLYLRAIEIGEKTLGPNHPRLAT 90
            GKY EA PLY RAIEIGEKTLGPNHP LAT
Sbjct:   13 GKYNEAKPLYERAIEIGEKTLGPNHPNLAT 42
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6977.15116.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.850e-6
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 GKYAEADPLYLRAIEIGEKTLGPNHPRLATRLSNRGVLLQRQ 126
            G +AEADP  LRAIEIGEK LGP HP LA  L+NR  LL+ Q
Sbjct:  644 GNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRAELLRAQ 685
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6977.15116.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Kinesin3.570e-1069.77light chain-like protein n=1 Tax=Ectocarpus silicu... [more]
NB-ARC4.730e-1078.57and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
Uncharacterized8.900e-1088.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
TPR2.560e-982.86repeat-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized6.770e-971.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Reverse3.690e-870.73transcriptase Ty1/copia-type domain-containing pro... [more]
Uncharacterized3.600e-766.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical3.830e-765.12protein (Fragment) n=1 Tax=Aureoumbra lagunensis T... [more]
Hypothetical1.090e-686.67protein (Fragment) n=1 Tax=Aureoumbra lagunensis T... [more]
Uncharacterized2.850e-666.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6977contigE_fasciculatus_S2_contig6977:5540..7371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score69.3
Seed ortholog evalue2.5e-09
Seed eggNOG ortholog2880.D7G6W2
Model size657
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size657
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842355.1334898-CDS-E_fasciculatus_S2_contig6977:5539..56651696842355.1334898-CDS-E_fasciculatus_S2_contig6977:5539..5665Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6977 5540..5665 +
1696842355.153973-CDS-E_fasciculatus_S2_contig6977:6114..62401696842355.153973-CDS-E_fasciculatus_S2_contig6977:6114..6240Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6977 6115..6240 +
1696842355.1664314-CDS-E_fasciculatus_S2_contig6977:6348..64741696842355.1664314-CDS-E_fasciculatus_S2_contig6977:6348..6474Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6977 6349..6474 +
1696842355.18523-CDS-E_fasciculatus_S2_contig6977:6780..69061696842355.18523-CDS-E_fasciculatus_S2_contig6977:6780..6906Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6977 6781..6906 +
1696842355.1965904-CDS-E_fasciculatus_S2_contig6977:7218..73711696842355.1965904-CDS-E_fasciculatus_S2_contig6977:7218..7371Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6977 7219..7371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6977.15116.1prot_E_fasciculatus_S2_contig6977.15116.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6977 5540..7371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6977.15116.1

>prot_E_fasciculatus_S2_contig6977.15116.1 ID=prot_E_fasciculatus_S2_contig6977.15116.1|Name=mRNA_E_fasciculatus_S2_contig6977.15116.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=219bp
GKYAEADPLYLRAIEIGEKTLGPNHPRLATRLSNRGVLLQRQGRYSEADP
LHLRAIEIGEKTLAPDHPNLAAWLNSRAELLRAQGKYEEAAPLYLRAIEI
GETKLGTEHPKLATWLNNRAELLRVQGKYAEAGPLYLRSIEIGEKTLGPD
HPDLATWLSNRAELLRVQGKYAEADPLYLRAIEIGEKTLGPDHPDLATRL
NNRAGLLRAQVKAARFFW*
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mRNA from alignment at E_fasciculatus_S2_contig6977:5540..7371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6977.15116.1 ID=mRNA_E_fasciculatus_S2_contig6977.15116.1|Name=mRNA_E_fasciculatus_S2_contig6977.15116.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1832bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6977:5540..7371+ (Ectocarpus fasciculatus EfasUO2)
GGGAAGTATGCTGAGGCGGACCCTCTGTATCTTCGAGCTATTGAGATCGG
AGAGAAAACGTTGGGACCTAACCATCCACGTCTGGCAACCAGGCTCAGCA
ACCGGGGGGTGTTGTTGCAGCGCCAGGTGAGAGATCAAGGGTTTGGTATA
GAAATTCGTAGAGTTGAAACTTGTTTTGGTGCATAGTTCCGTTGTTGGGA
GAAAGTTGGCTGAACGAATCTACGATGTGTTGAAAGGGACGCACGGCGAG
GCCGGGCCACTTAATGAACGATCACAAGTTCATCCAACAGGAGGCTCTGG
ATCCGGAGCAACCCCGGTGTGGCCCAGTCGCTCAACTACCGGGACTGGAT
TGTGGAACCTTTGTTCCTCGGCAATATGCTGCACTAAGCCTTGGTCTACA
CCTCTTCCGTTCTTCCTCCTCCCCTGCCAAAGGGGAGAGGAAACGCTGGG
CCCTGACCACCCAGACCAGGCAACGACGCTCAACGACCGAGCGGCGGTTG
TCAACGATATGTTCCTCCGCATCAGCTCCGCTTGCTTTGACCACACGTCT
GTCATGCGTTTGCGTGATGCTGCAGGGGAGGTACTCCGAGGCCGACCCTC
TGCATCTTCGAGCTATTGAGATTGGGGAGAAGACGCTTGCCCCCGACCAC
CCGAATCTTGCGGCTTGGCTCAACAGCCGGGCGGAGTTGTTAAGAGCTCA
GGTGAGAGTCGTCAGAAGTTCCAATAAACTTCGTAGGGCCCTTGTTTGTT
GGTAAATCACACGTATTCTTCGTGGATCGCTGCCTTAATTAGATCATCTC
GCTACACAGGGCAAGTACGAAGAGGCGGCTCCTCTCTATCTTCGGGCTAT
TGAGATCGGGGAGACGAAGCTCGGCACCGAACACCCAAAGCTTGCCACAT
GGCTCAACAACCGGGCGGAGTTGTTGAGGGTGCAGGTGAGAGACCAAGGG
TTTGGTATTGAATTTCGTAGAGTTCAAACTCGTTTGTGAGGGATTTCGGT
TGTTAGGAGAAAGCTGGCTGAACGTATCCACGTTGTATTGCAAAGGTTAA
GCACGGCGAGGCCGAGCCACGTTGTGAACGATCACCGTCCGTACGAGAGA
AGGGGCTGGATCCGGAGCGACCCCGATGTGGCCAGTCGCTCAACCCGGGG
CTTGATTGTGGGGTCTTTGTTCCTCGGCAATATGCTGTACTAAACCTTGG
TCTACACTACACCTCTTCTGTTCTTCCTCCTCCCCTTCCAGGGGAAGTAT
GCTGAGGCGGGCCCTCTGTATCTTCGATCTATTGAAATCGGAGAGAAAAC
GTTGGGCCCTGATCACCCAGACCTGGCCACCTGGCTCAGCAACCGGGCGG
AGTTGTTGAGGGTGCAGGTGAGAGACCAAGGGTTCTATCTAGAAATTTTG
TAGAGTTCAATTTTCTGTGCGAAAAAAGTCGTATTTTGGTGCACCGCTGG
CCGAACGAACCCACCTTGTATTGGACAGGGTAACCTCAACGAGGCTGACC
CACTCTATGCTCTATGAACGATCGCAGTCAATACGCGAGAAGTCGCTTGG
TCCGGAGCGACTCCGATGTGGCCCAGTCGCTCAATAACCGGGGCGGTGTT
GTTGAGGGTTTGTTCCTCGGCAACATGCTGCACTAAGCCTTGGTCTGCAC
CTCTTCCGTTCTTCCTCCTCCCCTTCCAGGGGAAGTATGCTGAGGCGGAC
CCTCTGTACCTTCGAGCTATTGAGATCGGAGAGAAAACGCTGGGCCCTGA
CCACCCGGACCTGGCAACCAGGCTCAACAACCGGGCGGGGTTGTTGAGAG
CGCAGGTGAAAGCCGCACGGTTCTTCTGGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6977:5540..7371+

>mRNA_E_fasciculatus_S2_contig6977.15116.1 ID=mRNA_E_fasciculatus_S2_contig6977.15116.1|Name=mRNA_E_fasciculatus_S2_contig6977.15116.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=657bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6977:5540..7371+ (Ectocarpus fasciculatus EfasUO2)
GGGAAGTATGCTGAGGCGGACCCTCTGTATCTTCGAGCTATTGAGATCGG
AGAGAAAACGTTGGGACCTAACCATCCACGTCTGGCAACCAGGCTCAGCA
ACCGGGGGGTGTTGTTGCAGCGCCAGGGGAGGTACTCCGAGGCCGACCCT
CTGCATCTTCGAGCTATTGAGATTGGGGAGAAGACGCTTGCCCCCGACCA
CCCGAATCTTGCGGCTTGGCTCAACAGCCGGGCGGAGTTGTTAAGAGCTC
AGGGCAAGTACGAAGAGGCGGCTCCTCTCTATCTTCGGGCTATTGAGATC
GGGGAGACGAAGCTCGGCACCGAACACCCAAAGCTTGCCACATGGCTCAA
CAACCGGGCGGAGTTGTTGAGGGTGCAGGGGAAGTATGCTGAGGCGGGCC
CTCTGTATCTTCGATCTATTGAAATCGGAGAGAAAACGTTGGGCCCTGAT
CACCCAGACCTGGCCACCTGGCTCAGCAACCGGGCGGAGTTGTTGAGGGT
GCAGGGGAAGTATGCTGAGGCGGACCCTCTGTACCTTCGAGCTATTGAGA
TCGGAGAGAAAACGCTGGGCCCTGACCACCCGGACCTGGCAACCAGGCTC
AACAACCGGGCGGGGTTGTTGAGAGCGCAGGTGAAAGCCGCACGGTTCTT
CTGGTAG
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