mRNA_E_fasciculatus_S2_contig6976.15114.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6976.15114.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL21_ECTSI) HSP 1 Score: 390 bits (1002), Expect = 1.450e-126 Identity = 267/296 (90.20%), Postives = 268/296 (90.54%), Query Frame = 1
Query: 1 MRMENSPGPVEVPPMTTPEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGTSPPLVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTTLIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXP-AGAGMPGGIXXXXXXXXXXXXMNGQPNY 885
MRMENSPGPVEVPP+T PE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AEGTSPPLVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDT LIVESVKDSTVCTVT DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDAL TILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXX AGAGMPGGI MNGQPNY
Sbjct: 1 MRMENSPGPVEVPPVT-PEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------AEGTSPPLVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTSDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALNTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXXXAGAGMPGGIPYGMMNGMGAPMMNGQPNY 287
BLAST of mRNA_E_fasciculatus_S2_contig6976.15114.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS0_9PHAE) HSP 1 Score: 385 bits (988), Expect = 6.750e-122 Identity = 255/293 (87.03%), Postives = 260/293 (88.74%), Query Frame = 1
Query: 7 MENSPGPVEVPPMTTPEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGTSPPLVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTTLIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAXXXXXXXXXXXXXXXPAGAGMPGGIXXXXXXXXXXXXMNGQPNY 885
ME+SPGPVEVP TPE AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EGT+PP+VPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDT LIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPS+TPQEKIR+IFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAA PAGAGMPGGI MNGQPNY
Sbjct: 1 MESSPGPVEVP-RVTPEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EGTTPPVVPEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSDTPQEKIRKIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAAAAAAAPYGLGAG---PAGAGMPGGIPYGMMNGMGAPMMNGQPNY 288
BLAST of mRNA_E_fasciculatus_S2_contig6976.15114.1 vs.
Match: HTH (La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL1_9STRA) HSP 1 Score: 226 bits (576), Expect = 3.210e-70 Identity = 114/176 (64.77%), Postives = 143/176 (81.25%), Query Frame = 1
Query: 214 KLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTTLIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETPQEK-------IREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPV 720
+L+GKEL+ AL++QVEFYFSK NLQSDGFLVS+M+A CVP++VIAQF K++ LT+D I +V +S+VCTVTP GI+P++K ER+TIILREIPS+TP K +RE+F G+G+API+ +RSDVG TWFVT SE DA+ TILALR +TFEGK +KARLK ENLLRSFFPV
Sbjct: 47 RLEGKELVDALRQQVEFYFSKANLQSDGFLVSRMDASGCVPISVIAQFAKVRALTTDEGAIAAAVANSSVCTVTPQGIRPNLKAERHTIILREIPSDTPPAKASCCCTCVRELFAGEGMAPIRGVRSDVGATWFVTCASEADAMATILALRSRTFEGKPVKARLKGENLLRSFFPV 222
BLAST of mRNA_E_fasciculatus_S2_contig6976.15114.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKN7_HETAK) HSP 1 Score: 224 bits (570), Expect = 2.590e-69 Identity = 114/176 (64.77%), Postives = 141/176 (80.11%), Query Frame = 1
Query: 217 LDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTTLIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQP 744
L+G+ L A+KKQ+EFYFS+QNLQ+DGFLVSKMNA M VP+ VIA+F KI+ LT + +I +++ S VC VT D IKP+ K ERNTIILREIPS TP+EK+REIFTG+G+API +IRSDVGDTWFVT+ SE A+ LALR + FEG+ +KARLKSENLLR+F+PVP AA P
Sbjct: 31 LEGEALREAVKKQIEFYFSRQNLQTDGFLVSKMNANMEVPITVIAEFAKIRALTREPDVIRAALEGSKVCIVTEDAIKPNFKTERNTIILREIPSNTPEEKVREIFTGEGMAPITNIRSDVGDTWFVTLGSEAAAVAACLALRERAFEGRPVKARLKSENLLRAFYPVPQAAADAP 206
BLAST of mRNA_E_fasciculatus_S2_contig6976.15114.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XI52_9STRA) HSP 1 Score: 204 bits (518), Expect = 2.430e-58 Identity = 107/176 (60.80%), Postives = 136/176 (77.27%), Query Frame = 1
Query: 217 LDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTTLIVESVKDSTVCTV--TPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEV 738
L+G EL A+K+QVEFYFS+ NL +D +LVS+MN+QM VPV VI F KI+QLT +T L+VE+V+DST+C++ + D IKP+IK ER TIILREIPS T E++ IF G G + S+RSDVGDTWFVTM SE +A++T+LALR KTF G AIKARLKSEN+L+SF+P A V
Sbjct: 9 LEGAELKQAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTALLVEAVQDSTICSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVEAIFEGCG--KVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVLKSFYPTQPAENV 182
BLAST of mRNA_E_fasciculatus_S2_contig6976.15114.1 vs.
Match: Ammonium (Transporter (Amt) Family n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DNS3_PHYNI) HSP 1 Score: 198 bits (504), Expect = 6.780e-58 Identity = 105/175 (60.00%), Postives = 133/175 (76.00%), Query Frame = 1
Query: 220 DGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTTLIVESVKDSTVCTV--TPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEV 738
+G EL A+K+QVEFYFS+ NL +D +LVS+MN+QM VPV VI F KI+QLT D L+V++V+DSTVC++ + D IKP+IK ER TIILREIPS T E++ IF G G + S+RSDVGDTWFVTM SE +A++T+LALR KTF G IKARLKSEN+L+SF+P A V
Sbjct: 10 EGAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAIFEGCG--KVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVLKSFYPTQPAENV 182
BLAST of mRNA_E_fasciculatus_S2_contig6976.15114.1 vs.
Match: La-related (protein 4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUF3_PLAHL) HSP 1 Score: 196 bits (498), Expect = 2.500e-57 Identity = 105/180 (58.33%), Postives = 133/180 (73.89%), Query Frame = 1
Query: 205 PEVKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTTLIVESVKDSTVCTVTP--DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEV 738
P L+G EL A+K+QVEFYFS+ NL +D +LVS+MN+QM VPV VI F KI+QLT +T L+VE+V+DSTVC+++ D IKP+IK ER TIILREIPS T E++ IF G + +RSDVGDTWF+TM SE +A+ T+LALR KT G AIKARLKSEN+L+SF+P A V
Sbjct: 5 PVKALEGAELKEAIKRQVEFYFSRSNLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTMLLVEAVQDSTVCSLSSSKDAIKPNIKSERTTIILREIPSSTKPEEVEAIFKDCG--KVIGVRSDVGDTWFITMSSEAEAVDTLLALRSKTLNGAAIKARLKSENILKSFYPTQPAENV 182
BLAST of mRNA_E_fasciculatus_S2_contig6976.15114.1 vs.
Match: HTH (La-type RNA-binding domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXK9_9STRA) HSP 1 Score: 199 bits (507), Expect = 8.160e-57 Identity = 108/172 (62.79%), Postives = 130/172 (75.58%), Query Frame = 1
Query: 217 LDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTTLIVESVKDSTVCTVTPDG--IKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPT 726
L G L ALK QVEFYFSK NL +D FLVS+MN+QM VPV VI F KI+ LT+D L+V+S+KDSTVC+++P+G IKP+IK ERNTIILREIPS T + + IF G G + S+RSDVGDTWFVTM +E+DA+ T+LALR KTF IKARLKSEN+LRSF P T
Sbjct: 7 LSGDALKEALKSQVEFYFSKANLVNDTFLVSQMNSQMYVPVDVIVGFSKIKALTTDVALVVDSIKDSTVCSLSPEGDAIKPNIKSERNTIILREIPSATDPKDVEAIFEGCGT--VASVRSDVGDTWFVTMATEEDAVNTLLALRSKTFHDAPIKARLKSENVLRSFLPEST 176
BLAST of mRNA_E_fasciculatus_S2_contig6976.15114.1 vs.
Match: Uncharacterized (protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YGZ8_PHYSP) HSP 1 Score: 201 bits (510), Expect = 1.560e-56 Identity = 105/178 (58.99%), Postives = 134/178 (75.28%), Query Frame = 1
Query: 211 VKLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTTLIVESVKDSTVCTVTP--DGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEV 738
+ +G EL A+K+QVEFYFS+ NL +D +LVS+MN+QM VPV VI F KI+QLT D L+VE+V+DST+C++ D IKP+IK ER TIILREIPS T E++ IF DG + S+RSDVGDTWFVTM +E +A++T+LALR KTF G AIKARLKSEN+L+SF+P A V
Sbjct: 23 IPTEGAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDAALLVEAVQDSTICSLNSAKDAIKPNIKSERTTIILREIPSSTKPEEVEAIF--DGCGKVASVRSDVGDTWFVTMNTEAEAVSTLLALRSKTFNGAAIKARLKSENVLKSFYPSQPAENV 198
BLAST of mRNA_E_fasciculatus_S2_contig6976.15114.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJK8_PYTOL) HSP 1 Score: 199 bits (506), Expect = 3.950e-56 Identity = 110/182 (60.44%), Postives = 135/182 (74.18%), Query Frame = 1
Query: 214 KLDGKELLVALKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTTLIVESVKDSTVCTV--TPDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAAEVQPTAA 753
KL G+EL A+K+QVEFYFS+ NL +D +LVS+MN+QM VPV I F KI+QLT L+VE+V DSTV ++ T D IKP+IK ERNTIILREIPS T E+++ IF G G + ++RSDVGDTWFVTM SEDDA+ T+LALR KTF IKARLKSENLLRSF+P +V+P A
Sbjct: 9 KLVGEELKKAIKQQVEFYFSRANLANDAYLVSQMNSQMYVPVDTIIAFGKIKQLTESAALLVEAVADSTVVSLNETKDAIKPTIKSERNTIILREIPSATQPEEVKAIFEGSG--EVVNVRSDVGDTWFVTMASEDDAVKTLLALRSKTFNNAPIKARLKSENLLRSFYPT---QQVEPVVA 185 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6976.15114.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig6976.15114.1 >prot_E_fasciculatus_S2_contig6976.15114.1 ID=prot_E_fasciculatus_S2_contig6976.15114.1|Name=mRNA_E_fasciculatus_S2_contig6976.15114.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=295bp MRMENSPGPVEVPPMTTPEVAAAAAGGAAAAAATVITKAAGASDEVAASSback to top mRNA from alignment at E_fasciculatus_S2_contig6976:160..2742- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig6976.15114.1 ID=mRNA_E_fasciculatus_S2_contig6976.15114.1|Name=mRNA_E_fasciculatus_S2_contig6976.15114.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2583bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6976:160..2742- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6976:160..2742- >mRNA_E_fasciculatus_S2_contig6976.15114.1 ID=mRNA_E_fasciculatus_S2_contig6976.15114.1|Name=mRNA_E_fasciculatus_S2_contig6976.15114.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=885bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6976:160..2742- (Ectocarpus fasciculatus EfasUO2)back to top |