mRNA_E_fasciculatus_S2_contig6974.15113.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6974.15113.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT33_ECTSI) HSP 1 Score: 273 bits (698), Expect = 5.290e-83 Identity = 167/193 (86.53%), Postives = 170/193 (88.08%), Query Frame = 1
Query: 1 QSWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKLAENEAARLEYQEKHISDGNSN-DNGHSQGGGVDDDDHPPAPAKSDGATANPPGHDARPSSNDKPCDPKGGGEEEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQ------RGPASEKPRARSDSA 558
QSWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKLAE EAA+LE QEKH DGN+N DN HS+GGGVD DDHP APAKSDGAT P GHDARPS DK CD G GEEEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQ RGPASEKPRARSDSA
Sbjct: 131 QSWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKLAEKEAAKLESQEKH--DGNNNSDNEHSRGGGVDADDHPTAPAKSDGATDQP-GHDARPSGTDKSCD--GKGEEEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQTRLPRWRGPASEKPRARSDSA 318
BLAST of mRNA_E_fasciculatus_S2_contig6974.15113.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F5_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 3.230e-16 Identity = 55/123 (44.72%), Postives = 74/123 (60.16%), Query Frame = 3
Query: 504 ARAERARKREAEGTIRQCNEAKLEFRFEETRAASSTPGGPVGRGSGSSGDIVLEVAVPKHLDSSLIDLDV-------------LRLSLQAEVKAGEAKARRSKTTGSLVVTMPKVDPDQSIGL 833
A E+AR+RE EG +RQCNE KL+F F+E G ++L++AVP++LDSSLID+DV LRL L EV AG +KA+RSKTTG LV+ MPKV+ ++G+
Sbjct: 229 AATEKARQRELEGVVRQCNEGKLDFFFDEQSFH---------------GHLLLDIAVPRYLDSSLIDVDVHPHYISVVIKGKVLRLQLPVEVLAGSSKAQRSKTTGHLVIYMPKVNSRDTVGI 336
BLAST of mRNA_E_fasciculatus_S2_contig6974.15113.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAK5_AURAN) HSP 1 Score: 82.0 bits (201), Expect = 1.090e-13 Identity = 54/106 (50.94%), Postives = 64/106 (60.38%), Query Frame = 3
Query: 528 REAEGTIRQCNEAKLEFRFEETRAASSTPGGPVGRGSGSSGDIVLEVAVPKHLDSSLIDLDV-------------LRLSLQAEVKAGEAKARRSKTTGSLVVTMPK 806
RE G I+QCN+ K EF ++E S PG +VL+V V +HLDSSLIDLDV LRL+L AEVKA +AKA+RSKTTG LVVTMPK
Sbjct: 248 REERGAIQQCNQGKWEFHWDE----ESKPG-----------FVVLDVHVQRHLDSSLIDLDVHPHYVSVVIKSKTLRLALPAEVKASDAKAQRSKTTGHLVVTMPK 338
BLAST of mRNA_E_fasciculatus_S2_contig6974.15113.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T5Q3_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 3.720e-13 Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 3
Query: 513 ERARKREAEGTIRQCNEAKLEFRFEETRAASSTPGGPVGRGSGSSGDIVLEVAVPKHLDSSLIDLDV-------------LRLSLQAEVKAGEAKARRSKTTGSLVVTMPKVDPDQSIGLIPTDGRRRA 860
++AR+RE G IRQCNE K F+F E + G ++L++++ KHL SSLID+D+ LRL L AEVKA E+ A+RS TTG L++ MPKVDP++++ I + RA
Sbjct: 232 DKAREREERGDIRQCNEGKWIFQFNEEQKP---------------GYVLLDISIQKHLSSSLIDVDIHPTYVSVVIKSKILRLILPAEVKAEESTAKRSTTTGHLLLCMPKVDPEENMIGIRASSKYRA 345
BLAST of mRNA_E_fasciculatus_S2_contig6974.15113.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U406_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 6.120e-12 Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 3
Query: 549 RQCNEAKLEFRFEETRAASSTPGGPVGRGSGSSGDIVLEVAVPKHLDSSLIDLDV-------------LRLSLQAEVKAGEAKARRSKTTGSLVVTMPKVDPDQSI 827
RQ N A LEFR +E GS +G ++L++ +P+HLDSSL+D+DV L L L AEVKAG AKA+RSKTTG L++TMPK +P++++
Sbjct: 274 RQTNAAGLEFRIDE-------------EGSDGAGAVLLDLTLPRHLDSSLVDVDVHPRYVSVVVKNKRLLLHLPAEVKAGAAKAQRSKTTGHLLITMPKENPEENM 366
BLAST of mRNA_E_fasciculatus_S2_contig6974.15113.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZEY3_TRICV) HSP 1 Score: 77.4 bits (189), Expect = 7.580e-12 Identity = 55/139 (39.57%), Postives = 76/139 (54.68%), Query Frame = 3
Query: 540 GTIRQCNEAKLEFRFEETRAASSTPGGPVGRGSGSSGDIVLEVAVPKHLDSSLIDLDV-------------LRLSLQAEVKAGEAKARRSKTTGSLVVTMPKVDPDQSIGLIPTDGRRRAPGVVADRAAASKNAAKNDA 917
G I+QCNE K +F F+E + G ++L+VA+ KHL SSLID+DV LRL L AEVKA E+ A+RS TG L+V+MPK+DP++++ I RA +RAA + N AK +
Sbjct: 258 GQIKQCNEGKWKFCFDEEKEL---------------GSVLLDVAIQKHLSSSLIDIDVHPTFISIVIKSKVLRLVLPAEVKANESIAQRSMATGHLLVSMPKLDPEENMIHI------RASIKAKERAADTANKAKGSS 375
BLAST of mRNA_E_fasciculatus_S2_contig6974.15113.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E455_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.120e-11 Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 3
Query: 507 RAERARKREAEGTIRQCNEAKLEFRFEETRAASSTPGGPVGRGSGSSGDIVLEVAVPKHLDSSLIDLD-------------VLRLSLQAEVKAGEAKARRSKTTGSLVVTMPKVD 812
+ ER R+RE EG I QCNE K EF F+E G I+L++ V +HLDSSLIDLD VLRL L +EV A + A+RSK TG L++ MPK++
Sbjct: 286 KVERVRQREEEGKILQCNEGKWEFHFDEESVK---------------GSIILDLHVSRHLDSSLIDLDIHPAYVSVVIKSKVLRLKLPSEVNASLSTAKRSKVTGHLLIEMPKIN 385
BLAST of mRNA_E_fasciculatus_S2_contig6974.15113.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G672_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 6.430e-11 Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 3
Query: 513 ERARKREAEGTIRQCNEAKLEFRFEETRAASSTPGGPVGRGSGSSGDIVLEVAVPKHLDSSLIDLDV-------------LRLSLQAEVKAGEAKARRSKTTGSLVVTMPKVDPDQSI 827
ER R+ E T+RQ N+ K FRF E +TPG +VL + + +HL +SL+D+DV LRL L AEV + + A+RS TTG LV+TMPK+DP++++
Sbjct: 105 ERKREEEKNCTVRQRNDGKWLFRFNE----DTTPG-----------SVVLTIGIQRHLSTSLVDVDVHPKYISIIIKSKILRLVLPAEVNSDNSTAQRSLTTGELVITMPKIDPEENM 207
BLAST of mRNA_E_fasciculatus_S2_contig6974.15113.1 vs.
Match: Cysteine (protease n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8A4_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 9.220e-11 Identity = 52/113 (46.02%), Postives = 63/113 (55.75%), Query Frame = 3
Query: 513 ERARKREAEGTIRQCNEAKLEFRFEETRAASSTPGGPVGRGSGSSGDIVLEVAVPKHLDSSLIDLDV-------------LRLSLQAEVKAGEAKARRSKTTGSLVVTMPKVD 812
E+AR+ E EGTIRQCNE K FR +E + PG I+LEV VP+ LDSSLID+DV LRL EVK + A RSKTTG+L +T+ KVD
Sbjct: 258 EKARRMETEGTIRQCNEGKYIFRMDE----ETKPG-----------YILLEVDVPRFLDSSLIDIDVHPTYVTILIKNKMLRLRFPEEVKCDQGSALRSKTTGALQLTVEKVD 355
BLAST of mRNA_E_fasciculatus_S2_contig6974.15113.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTQ6_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.580e-10 Identity = 66/173 (38.15%), Postives = 92/173 (53.18%), Query Frame = 1
Query: 4 SWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKLAENEAARLEYQEKHISDGNSNDNGHSQGGGVDDDDHPPAPAKS---DGATANPPGHDARPSSNDKPCDPKGGGEEEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQ 513
+W F+ Y IA+LPQL+ LDG EITR+ +I+A+Q+LPAL E+ LA VR K A+ A + Q K PAP+ + +G T +A SND + +E+T +TPE R IY+E+A+QK+EKE+R N PK RN+E EQ
Sbjct: 156 NWPNFKHYVIAKLPQLQNLDGTEITRSMQIQARQKLPALEIELEKLASAVRTEKRAK---AIITEQAK------------------------PAPSVTTYANGVTIEDVDEEAE-GSND---------QSQEMTDNTPETRVRIYQELAQQKKEKEDRANVNAPKKRNYEKEQ 291 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6974.15113.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig6974.15113.1 >prot_E_fasciculatus_S2_contig6974.15113.1 ID=prot_E_fasciculatus_S2_contig6974.15113.1|Name=mRNA_E_fasciculatus_S2_contig6974.15113.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp MAEQKREKEERQKENLPKDRNFELEQRGPASEKPRARSDSATRQNSSSASback to top mRNA from alignment at E_fasciculatus_S2_contig6974:142..4198+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig6974.15113.1 ID=mRNA_E_fasciculatus_S2_contig6974.15113.1|Name=mRNA_E_fasciculatus_S2_contig6974.15113.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4057bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6974:142..4198+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6974:142..4198+ >mRNA_E_fasciculatus_S2_contig6974.15113.1 ID=mRNA_E_fasciculatus_S2_contig6974.15113.1|Name=mRNA_E_fasciculatus_S2_contig6974.15113.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6974:142..4198+ (Ectocarpus fasciculatus EfasUO2)back to top |