mRNA_E_fasciculatus_S2_contig697.15108.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig697.15108.1
Unique NamemRNA_E_fasciculatus_S2_contig697.15108.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig697.15108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 5.370e-18
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 2 
Query:  251 LTGKQIQVLVLYTNMSLDLMSVSDIQMETMVSAALSTVNVGFDNSNIGIDTTTVYQGRV 427
            L    ++VLVLYTNMSL LM VSD+QMETMVSAA+STVN+GF+NS+IGI+TTTVYQGR+
Sbjct:  119 LQSNPVEVLVLYTNMSLVLMGVSDVQMETMVSAAISTVNMGFENSHIGIETTTVYQGRL 177
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BLAST of mRNA_E_fasciculatus_S2_contig697.15108.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP8_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 9.510e-16
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 2 
Query:  275 LVLYTNMSLDLMSVSDIQMETMVSAALSTVNVGFDNSNIGIDTTTVYQGRV 427
            +VLYTNMSL LM VSD+QMETMVSAA+STVNVGF+NSNIGI+TTTVY+GR+
Sbjct:  358 MVLYTNMSLVLMGVSDVQMETMVSAAISTVNVGFENSNIGIETTTVYKGRL 408
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig697.15108.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.370e-1874.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.510e-1682.35protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig697contigE_fasciculatus_S2_contig697:5056..5488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size435
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842354.3309572-UTR-E_fasciculatus_S2_contig697:5055..51401696842354.3309572-UTR-E_fasciculatus_S2_contig697:5055..5140Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig697 5056..5140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842354.342364-CDS-E_fasciculatus_S2_contig697:5140..54881696842354.342364-CDS-E_fasciculatus_S2_contig697:5140..5488Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig697 5141..5488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig697.15108.1prot_E_fasciculatus_S2_contig697.15108.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig697 5141..5488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig697.15108.1

>prot_E_fasciculatus_S2_contig697.15108.1 ID=prot_E_fasciculatus_S2_contig697.15108.1|Name=mRNA_E_fasciculatus_S2_contig697.15108.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=116bp
MAPLIPPGISKAGTAVPIKPWPHPPCSNQRPRRRQVPHRTAVSLYASSLP
PSDVCLTGKQIQVLVLYTNMSLDLMSVSDIQMETMVSAALSTVNVGFDNS
NIGIDTTTVYQGRVSC
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mRNA from alignment at E_fasciculatus_S2_contig697:5056..5488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig697.15108.1 ID=mRNA_E_fasciculatus_S2_contig697.15108.1|Name=mRNA_E_fasciculatus_S2_contig697.15108.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=433bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig697:5056..5488+ (Ectocarpus fasciculatus EfasUO2)
GGGGTCGTCAGTAGACGTTGGGTAAACATCTAGACAGGCGTCAAAAAGTA
AAGACAGAAACAACGAAAAGGTACGCGCGTAAAAAATGGCGCCCCTTATC
CCTCCGGGGATTTCCAAAGCGGGGACAGCGGTACCTATCAAACCATGGCC
CCACCCTCCCTGCTCTAACCAACGTCCTCGTAGACGCCAAGTACCGCACA
GAACAGCCGTCAGTTTATACGCCAGTTCGCTTCCTCCTTCCGACGTTTGC
CTTACGGGAAAACAGATTCAGGTGCTGGTGCTCTACACCAACATGTCGTT
AGACTTGATGAGCGTGAGCGACATCCAGATGGAAACCATGGTCTCCGCCG
CTCTCTCGACCGTGAACGTGGGCTTCGATAACTCCAATATCGGGATCGAT
ACAACCACAGTCTACCAAGGCAGGGTAAGTTGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig697:5056..5488+

>mRNA_E_fasciculatus_S2_contig697.15108.1 ID=mRNA_E_fasciculatus_S2_contig697.15108.1|Name=mRNA_E_fasciculatus_S2_contig697.15108.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=348bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig697:5056..5488+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGCCCCTTATCCCTCCGGGGATTTCCAAAGCGGGGACAGCGGTACC
TATCAAACCATGGCCCCACCCTCCCTGCTCTAACCAACGTCCTCGTAGAC
GCCAAGTACCGCACAGAACAGCCGTCAGTTTATACGCCAGTTCGCTTCCT
CCTTCCGACGTTTGCCTTACGGGAAAACAGATTCAGGTGCTGGTGCTCTA
CACCAACATGTCGTTAGACTTGATGAGCGTGAGCGACATCCAGATGGAAA
CCATGGTCTCCGCCGCTCTCTCGACCGTGAACGTGGGCTTCGATAACTCC
AATATCGGGATCGATACAACCACAGTCTACCAAGGCAGGGTAAGTTGC
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