mRNA_E_fasciculatus_S2_contig6963.15103.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6963.15103.1
Unique NamemRNA_E_fasciculatus_S2_contig6963.15103.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6963.15103.1 vs.
Match: Similarity (to cobalamin synthesis protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU6_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 1.180e-89
Identity = 203/236 (86.02%), Postives = 205/236 (86.86%), Query Frame = 1 
Query:    1 QMDKHFADILADKKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGRAHRHAHDRLGAQSVGVEVAEGPIDWAKFTSWLKSFLEKEGEELIWRLKGVLWTTATTGSGAATTWGWGAGRRTVVQGLYGHFESEGSDWPAGATRVSRMVFIGDLSPRVQEALRAGVRSCIAARRARPXXXXXXXXXXXXXXXXXXXXXXXXXFASRLGTVKFGGGGNDLFL 708
            +MDKHFADILADKK         XXXXXXXXXXXXXXXXXXXXXXXXXXX           PGR HRHAHDRLGAQSVGVEVAEGPIDW KFTSWLK FLEKEGEELIWRLKGVLWTTA  GSGAATTWGWGAGRRTVVQGLYGHFESE SDWPAGATRVSRMVFIGDLSPRVQEALRAGVRSC+A RRARP XXXXXXXXXXXXXXXXXXXXXX  FASRLG VKFGGGGNDLFL
Sbjct:  352 EMDKHFADILADKKKNSDKHDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXSS---------PGRDHRHAHDRLGAQSVGVEVAEGPIDWTKFTSWLKGFLEKEGEELIWRLKGVLWTTAANGSGAATTWGWGAGRRTVVQGLYGHFESEVSDWPAGATRVSRMVFIGDLSPRVQEALRAGVRSCVAVRRARPPXXXXXXXXXXXXXXXXXXXXXX--FASRLGAVKFGGGGNDLFL 576
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig6963.15103.1 vs.
Match: GTP-binding (protein n=2 Tax=Massilia lutea TaxID=321985 RepID=A0A4P6L617_9BURK)

HSP 1 Score: 60.1 bits (144), Expect = 6.300e-7
Identity = 43/123 (34.96%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:  193 AHRHAHDRLGAQSVGVEVAEGPIDWAKFTSWLKSFLEKEGEELIWRLKGVLWTTATTGSGAATTWGWGAGRRTVVQGLYGHFESEGSD-WPAGATRVSRMVFIGDLSPRVQEALRAGVRSCIA 558
            AH H+HD    +SV +  A  P D     +WL   L+ +G++L  RLKG+L                G GRR V+Q ++   +   +D WPAG +RVS++VFIG    R  + L++G+  C+A
Sbjct:  280 AHGHSHDPS-VESVSLTFA-APFDRRLLDAWLAQLLQAQGDDLF-RLKGILAIA-------------GDGRRHVLQAVHRVLDLRPADTWPAGGSRVSKLVFIGRNLDR--DTLKSGLDWCLA 384
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6963.15103.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Similarity1.180e-8986.02to cobalamin synthesis protein n=2 Tax=Ectocarpus ... [more]
GTP-binding6.300e-734.96protein n=2 Tax=Massilia lutea TaxID=321985 RepID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6963contigE_fasciculatus_S2_contig6963:6700..7964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score285.8
Seed ortholog evalue1.8e-74
Seed eggNOG ortholog2880.D8LBU6
Model size711
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ATP binding
EggNOG OGsCOG0523@1,KOG2743@2759
Cds size708
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842354.044758-CDS-E_fasciculatus_S2_contig6963:6699..69901696842354.044758-CDS-E_fasciculatus_S2_contig6963:6699..6990Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6963 6700..6990 -
1696842354.0572844-CDS-E_fasciculatus_S2_contig6963:7343..74721696842354.0572844-CDS-E_fasciculatus_S2_contig6963:7343..7472Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6963 7344..7472 -
1696842354.0682726-CDS-E_fasciculatus_S2_contig6963:7673..79611696842354.0682726-CDS-E_fasciculatus_S2_contig6963:7673..7961Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6963 7674..7961 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842354.079073-UTR-E_fasciculatus_S2_contig6963:7961..79641696842354.079073-UTR-E_fasciculatus_S2_contig6963:7961..7964Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6963 7962..7964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6963.15103.1prot_E_fasciculatus_S2_contig6963.15103.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6963 6700..7961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6963.15103.1

>prot_E_fasciculatus_S2_contig6963.15103.1 ID=prot_E_fasciculatus_S2_contig6963.15103.1|Name=mRNA_E_fasciculatus_S2_contig6963.15103.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=236bp
MDKHFADILADKKNNSDNHGDDDDHHDHHHGHGEAKANTPPHGGGEKSTA
AAAAAAVAAPPGRAHRHAHDRLGAQSVGVEVAEGPIDWAKFTSWLKSFLE
KEGEELIWRLKGVLWTTATTGSGAATTWGWGAGRRTVVQGLYGHFESEGS
DWPAGATRVSRMVFIGDLSPRVQEALRAGVRSCIAARRARPPPPKPRAIA
GRDGGSGGGGGGGGGGFASRLGTVKFGGGGNDLFL*
back to top

mRNA from alignment at E_fasciculatus_S2_contig6963:6700..7964-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6963.15103.1 ID=mRNA_E_fasciculatus_S2_contig6963.15103.1|Name=mRNA_E_fasciculatus_S2_contig6963.15103.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1265bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6963:6700..7964- (Ectocarpus fasciculatus EfasUO2)
CAGATGGACAAGCACTTCGCGGACATCCTCGCCGACAAGAAAAATAACTC
CGACAATCACGGCGACGACGACGACCACCACGATCACCACCACGGCCACG
GCGAAGCCAAGGCAAACACGCCGCCACACGGGGGGGGCGAGAAGAGCACA
GCAGCGGCGGCAGCGGCAGCGGTAGCAGCACCCCCGGGTCGCGCGCATCG
CCATGCGCACGACCGCCTAGGGGCGCAGAGCGTCGGGGTGGAGGTTGCGG
AAGGGCCGATCGACTGGGCAAAGTTCACCTCGTGGCTCAAGGTACTGTAA
CCCAACCGGGGCGAGGTGTGCCGCAAATCGTCTGAAGGGGGGGGCGGGGG
GGGGGGCGTGCATGAATTGCGTTCCACACACCTGTGCGCACGTGCACCCT
CTCAGCAGAACGGCTGACCATAGCACCTGTTTGCTGACGTGTTATTTTTT
TTTGTCCCCACGCACCGGGCGCGCTTTTGTATCCTCAACCAGAGCTTCCT
CGAGAAAGAGGGCGAGGAGTTGATCTGGAGGCTGAAGGGGGTGTTGTGGA
CGACCGCCACTACCGGGAGCGGCGCCGCGACGACCTGGGGCTGGGGGGCT
GGGAGGCGAACGGTAGTGCAGGTACGGCTCCACGGGAGGGGTTAGTCACA
CACGGCGACATTGTTGCGGGACATGGGTAGTCGAAACAAGACATGGTGTT
ATATCCGGAGGTGTGTGGCGGTGGTGCAGCAAGGCGTTGCGTGTGTTTGG
GACGGATGGCGTCTTTCTCGAACGCGCTTCTCTCTGTCACAGGAAGTGCT
TACTGTAAGGAATACTTGCTCGGCTGAAATACATGCTCGCAGGTGGGCTA
TCGACTCGAGCTAGAGTATGTCGAATCCCTCCGCTTGTTGCGCTGTGCCT
GAAACACGCAACAACAGCAGTCTCGGCGTGCACCTCTCTCTTCCCTTGTA
CGCGCTTGTCCACGTTTTAACCAGGGGCTATACGGCCACTTCGAGTCCGA
GGGGTCTGATTGGCCCGCAGGAGCGACGCGCGTCTCTCGAATGGTCTTCA
TCGGCGACCTGTCTCCCAGGGTACAGGAGGCGCTGCGAGCGGGGGTCCGC
TCGTGCATTGCGGCGCGCCGAGCCCGGCCCCCGCCCCCGAAGCCGCGCGC
TATCGCAGGAAGGGACGGTGGTAGCGGTGGCGGTGGCGGCGGTGGCGGCG
GTGGATTCGCTTCTCGCCTAGGGACCGTCAAGTTTGGGGGAGGGGGAAAC
GACCTGTTCTTGTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6963:6700..7964-

>mRNA_E_fasciculatus_S2_contig6963.15103.1 ID=mRNA_E_fasciculatus_S2_contig6963.15103.1|Name=mRNA_E_fasciculatus_S2_contig6963.15103.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=708bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6963:6700..7964- (Ectocarpus fasciculatus EfasUO2)
ATGGACAAGCACTTCGCGGACATCCTCGCCGACAAGAAAAATAACTCCGA
CAATCACGGCGACGACGACGACCACCACGATCACCACCACGGCCACGGCG
AAGCCAAGGCAAACACGCCGCCACACGGGGGGGGCGAGAAGAGCACAGCA
GCGGCGGCAGCGGCAGCGGTAGCAGCACCCCCGGGTCGCGCGCATCGCCA
TGCGCACGACCGCCTAGGGGCGCAGAGCGTCGGGGTGGAGGTTGCGGAAG
GGCCGATCGACTGGGCAAAGTTCACCTCGTGGCTCAAGAGCTTCCTCGAG
AAAGAGGGCGAGGAGTTGATCTGGAGGCTGAAGGGGGTGTTGTGGACGAC
CGCCACTACCGGGAGCGGCGCCGCGACGACCTGGGGCTGGGGGGCTGGGA
GGCGAACGGTAGTGCAGGGGCTATACGGCCACTTCGAGTCCGAGGGGTCT
GATTGGCCCGCAGGAGCGACGCGCGTCTCTCGAATGGTCTTCATCGGCGA
CCTGTCTCCCAGGGTACAGGAGGCGCTGCGAGCGGGGGTCCGCTCGTGCA
TTGCGGCGCGCCGAGCCCGGCCCCCGCCCCCGAAGCCGCGCGCTATCGCA
GGAAGGGACGGTGGTAGCGGTGGCGGTGGCGGCGGTGGCGGCGGTGGATT
CGCTTCTCGCCTAGGGACCGTCAAGTTTGGGGGAGGGGGAAACGACCTGT
TCTTGTAG
back to top