mRNA_E_fasciculatus_S2_contig696.15099.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig696.15099.1
Unique NamemRNA_E_fasciculatus_S2_contig696.15099.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig696.15099.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JG16_9PHAE)

HSP 1 Score: 766 bits (1979), Expect = 1.820e-278
Identity = 402/415 (96.87%), Postives = 406/415 (97.83%), Query Frame = 1
Query:    1 MLPFFLLALLPLLSAACALVSGFIGDDLSAARGGGLAFCLQPELPRHGRSEAVVGKDASTVGPRRQEKTAITMLTTTQTFGAGSMWPATSVSGGIGSGASRNDGASPGRRRPRARTSGSSSANSDSALHAMAIPARCALPSVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVANKQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSEDPSLEGEDLKTAICFRILEKSCSTSEMFNNLSGCSDLNSFLPDTLPETAPTQHQAAFAAESAAACAGALRLIPLMQPFRRAKMQGEGAVVVQKRAKRHTRRRKILAGRRRRIRTSNRPRTL 1245
            MLP FLLALLPLLSAACALVSGFIGDDLSAARG  LAFCLQPELPRHGRSEAVVGKD+STVGPRRQEKTAITMLTTT+TFGAGSMWPATS SGGIGSGASRNDGASPGRRRPRART GSSSANSDSALHAMAIPARCALPSVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVAN+QQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSEDPSLEGEDLKTAIC RILEKSCSTSEMFNNLSGCSDLNSFLPDTL ETAPTQHQ AFAAESAAACAGALRLIPLMQPFRR KMQGEGAVVVQKRAKRHTRRRKILAGRRRRIR+SNRPRTL
Sbjct:    1 MLPVFLLALLPLLSAACALVSGFIGDDLSAARGS-LAFCLQPELPRHGRSEAVVGKDSSTVGPRRQEKTAITMLTTTRTFGAGSMWPATSPSGGIGSGASRNDGASPGRRRPRARTGGSSSANSDSALHAMAIPARCALPSVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVANRQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSEDPSLEGEDLKTAICLRILEKSCSTSEMFNNLSGCSDLNSFLPDTLTETAPTQHQEAFAAESAAACAGALRLIPLMQPFRRTKMQGEGAVVVQKRAKRHTRRRKILAGRRRRIRSSNRPRTL 414          
BLAST of mRNA_E_fasciculatus_S2_contig696.15099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPF0_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.120e-45
Identity = 99/218 (45.41%), Postives = 128/218 (58.72%), Query Frame = 1
Query:  331 RPRARTSGSSSANSDSALHAMAIPARCALPSVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVANKQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSE-DPSLEGEDLKTAICFRILEKSCSTSEMFNNLSG 981
            RP ARTS +        L A  +P    +  VDLLR+ YGP R+FWGDL+  +TR FYH+LLPVS+                          L    + A+            A  TLEERAR ASMARHAARLY RERC LPSR+ A LYDG RHL+R+G++  +G+TW ELW KYE ++R+E  P    E ++  +C+RILEKSCST++MF+ L+G
Sbjct:   61 RPGARTSSTK-------LAAAVLPDPYPVAEVDLLRRIYGPARNFWGDLSAQQTRAFYHDLLPVSL--------------------------LQLEQEAADAS----------APLTLEERARRASMARHAARLYARERCALPSRITAALYDGFRHLQRYGTWNASGQTWDELWAKYEVQVRAELGPQAGEEAIRDGVCWRILEKSCSTNKMFDRLTG 235          
BLAST of mRNA_E_fasciculatus_S2_contig696.15099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 9.360e-40
Identity = 89/205 (43.41%), Postives = 118/205 (57.56%), Query Frame = 1
Query:  382 LHAMAIPARCALPSVDLLRQAYGPRRH-FWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVANKQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSE-DPSLEGEDLKTAICFRILEKSCSTSEMFNNLSGCSD 990
            L A  +P    +  +  LR+ YGPRR+ FWGDL+  +TR FYHELLPVS+  +A     LC                                     + TLEERAR ASMARHAARLY RERC LP R+ A LYDG RH +++G++  +G+TW ELW KYE ++R E  P    + ++ A+C RILEKSC T++MF+ L+G +D
Sbjct:   80 LSAAVLPDPYPVADLQSLRKVYGPRRNKFWGDLSNKQTRAFYHELLPVSLQFEA---DDLC-------------------------------------SLTLEERARRASMARHAARLYARERCALPGRLTAVLYDGFRHFRKYGTWNSSGQTWDELWAKYEGQVRRECGPEASEDAIRDAVCRRILEKSCCTNKMFDRLAGMAD 244          
BLAST of mRNA_E_fasciculatus_S2_contig696.15099.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3N8_9STRA)

HSP 1 Score: 132 bits (331), Expect = 8.580e-32
Identity = 73/189 (38.62%), Postives = 103/189 (54.50%), Query Frame = 1
Query:  415 LPSVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVANKQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSEDPSLEGEDLKTAICFRILEKSCSTSEMFNNLSG 981
            L +VD  RQ YG  +H+WGD + +ETR+ YHELLPVS         A  D        GMS                            LEERA+ AS ARH+AR+Y RERC LP R+VA LYDG R  + HG +   G TW ++W KYE+++  E P++  +DL+  +  RI++ +C T+ +F++ +G
Sbjct:  107 LTTVDDFRQTYGHNKHWWGDFSSSETRKLYHELLPVSF--------ASLDQTH-----GMS----------------------------LEERAKAASAARHSARIYARERCTLPGRIVAQLYDGFRSWRSHGEWNPDGLTWEQIWLKYEKRVLKELPNISNDDLEEEVYRRIIQSACRTNNVFDSATG 254          
BLAST of mRNA_E_fasciculatus_S2_contig696.15099.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVG2_NANGC)

HSP 1 Score: 104 bits (259), Expect = 5.110e-21
Identity = 74/194 (38.14%), Postives = 94/194 (48.45%), Query Frame = 1
Query:  415 LPSVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVANKQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSE--DPSLEG----EDLKTAICFRILEKSCSTSEMFNNLS 978
            + +VD LR  +G +  FWGDL   ETR  YH+LLP  +  DA            P                               A  +E+ ARLAS ARHAARLY RER  LP R+ A LYDG RHL   G +  TG ++ E+W KYE KI+ E  +    G    E+L   + FRILEKSC T+  F+  +
Sbjct:  124 ITTVDGLRTRHG-QGSFWGDLNHVETRYVYHQLLPRHLLQDA---------QAHPD------------------------------ALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFA 277          
BLAST of mRNA_E_fasciculatus_S2_contig696.15099.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMN0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 8.660e-21
Identity = 74/194 (38.14%), Postives = 94/194 (48.45%), Query Frame = 1
Query:  415 LPSVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVANKQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSE--DPSLEG----EDLKTAICFRILEKSCSTSEMFNNLS 978
            + +VD LR  +G +  FWGDL   ETR  YH+LLP  +  DA            P                               A  +E+ ARLAS ARHAARLY RER  LP R+ A LYDG RHL   G +  TG ++ E+W KYE KI+ E  +    G    E+L   + FRILEKSC T+  F+  +
Sbjct:  124 ITTVDGLRTRHG-QGSFWGDLNHVETRYVYHQLLPRHLLQDA---------QAHPD------------------------------ALAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFA 277          
BLAST of mRNA_E_fasciculatus_S2_contig696.15099.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0ZDZ1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.760e-20
Identity = 66/187 (35.29%), Postives = 97/187 (51.87%), Query Frame = 1
Query:  421 SVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVANKQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSEDPSLEGED-LKTAICFRILEKSCSTSEMFNNLS 978
            +V++LRQ YG R ++WGDL+  +TR  Y  LLP  +         L +   + L                                 L++RA +ASMAR+AA++Y RERC++P RV A+ YD  R+  R G +  TG T  ++W+KYER+I+SE      ED L  ++  RIL KSCST+   + L+
Sbjct:  104 TVNILRQEYGERANWWGDLSSRQTRLLYQRLLPRVI---------LSEDEFQDL--------------------------------PLKDRAYIASMARYAAKIYARERCRVPGRVAANFYDATRYAIRTGRWSWTGMTVDDIWNKYEREIKSELGEDVTEDKLYKSLYERILSKSCSTNPFIDQLT 249          
BLAST of mRNA_E_fasciculatus_S2_contig696.15099.1 vs.
Match: Hypothetical (protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IUJ0_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 7.800e-17
Identity = 66/204 (32.35%), Postives = 91/204 (44.61%), Query Frame = 1
Query:  379 ALHAMAIPARCALPSVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVANKQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSEDPSLEGE----DLKTAICFRILEKSCSTSEMFNNLS 978
            A HA A  A     SVD LRQ +G R+ ++GDL    TR+ YH LLP  +  D                                             A  L +RAR+A  AR AARLY RER  LP    + L+DGLRHL+ HG+F+  G +  E++ KY  ++    P   G+    D  T     +L KSCST+   ++++
Sbjct:   24 AYHAAAANASLVATSVDELRQLHGARQRWYGDLDWVGTRQLYHSLLPTHLVEDE--------------------------------------------ALPLAQRARMAVSARRAARLYARERALLPLCTGSMLFDGLRHLRDHGTFQPDGLSELEIFSKYAEQLGVPPPDWSGDADDGDAYTDFYLTVLRKSCSTNPRVDSVT 183          
BLAST of mRNA_E_fasciculatus_S2_contig696.15099.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N5H1_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 9.970e-16
Identity = 69/197 (35.03%), Postives = 92/197 (46.70%), Query Frame = 1
Query:  412 ALP-SVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVANKQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSEDPSLEGEDLKT---AICFRILEKSCSTSEMFNNLSGCSD 990
            ALP SVD LR   G R+ +WGDL   ETR  YH LLP S  +D           E  +                                +L ERARLA + RHAARLY RER +LP  +   L DG+R L   G F+  G +  ++W KY  +  +E   L  ED+ T   ++C  IL K+ +T++  + L GC D
Sbjct:  162 ALPTSVDALRDLLGHRQSWWGDLDAVETRELYHSLLP-SYLLD-----------EDRI--------------------------------SLHERARLAVLIRHAARLYARERAQLPLTLACELLDGVRQLWESGRFQPGGLSEEQVWRKYAEEY-AEAAGLLAEDVCTEDPSLCEMILRKASTTNKQVDELVGCLD 313          
BLAST of mRNA_E_fasciculatus_S2_contig696.15099.1 vs.
Match: Hypothetical (protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3XBR4_9SPIT)

HSP 1 Score: 86.3 bits (212), Expect = 5.580e-15
Identity = 62/187 (33.16%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  421 SVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVANKQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSEDPSLEGEDLKTAICFRILEKSCSTSEMFNNLSG 981
            +V+ LRQ YG R+H++GDL   ETR  YHELLP          + L + +                +D+A                   ERARLA  AR AARLY RER  LP  +   L DG+R L + G+F+  G +  ++W+KY   I+ +    +G D++  I   +L+KSC+++   + L G
Sbjct:  194 TVEALRQQYGHRQHWFGDLDARETRELYHELLP----------RQLLEND---------------AIDLA-------------------ERARLAVAARRAARLYARERALLPVSLSCELLDGMRTLMKKGTFQPGGLSEKQIWEKYYGAIQGQGG--DG-DVQDQIYMMVLQKSCTSNAAVDQLMG 333          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig696.15099.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Uncharacterized1.820e-27896.87protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Uncharacterized3.120e-4545.41protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized9.360e-4043.41protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical8.580e-3238.62protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized5.110e-2138.14protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Uncharacterized8.660e-2138.14protein n=1 Tax=Nannochloropsis gaditana TaxID=725... [more]
Hypothetical1.760e-2035.29protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical7.800e-1732.35protein n=1 Tax=Prymnesium polylepis TaxID=72548 R... [more]
Hypothetical9.970e-1635.03protein n=1 Tax=Haptolina brevifila TaxID=156173 R... [more]
Hypothetical5.580e-1533.16protein n=1 Tax=Strombidinopsis acuminata TaxID=14... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig696contigE_fasciculatus_S2_contig696:23281..26013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score780.8
Seed ortholog evalue3.2e-223
Seed eggNOG ortholog2880.D7FLF0
Model size1312
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG OGs2CBIZ@1,2SA42@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_007920.1
Cds size1248
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842353.7338269-UTR-E_fasciculatus_S2_contig696:23280..233441696842353.7338269-UTR-E_fasciculatus_S2_contig696:23280..23344Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig696 23281..23344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842353.7480245-CDS-E_fasciculatus_S2_contig696:23344..237711696842353.7480245-CDS-E_fasciculatus_S2_contig696:23344..23771Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig696 23345..23771 -
1696842353.756658-CDS-E_fasciculatus_S2_contig696:24163..247681696842353.756658-CDS-E_fasciculatus_S2_contig696:24163..24768Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig696 24164..24768 -
1696842353.7663465-CDS-E_fasciculatus_S2_contig696:25797..260131696842353.7663465-CDS-E_fasciculatus_S2_contig696:25797..26013Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig696 25798..26013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig696.15099.1prot_E_fasciculatus_S2_contig696.15099.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig696 23345..26013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig696.15099.1

>prot_E_fasciculatus_S2_contig696.15099.1 ID=prot_E_fasciculatus_S2_contig696.15099.1|Name=mRNA_E_fasciculatus_S2_contig696.15099.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=416bp
MLPFFLLALLPLLSAACALVSGFIGDDLSAARGGGLAFCLQPELPRHGRS
EAVVGKDASTVGPRRQEKTAITMLTTTQTFGAGSMWPATSVSGGIGSGAS
RNDGASPGRRRPRARTSGSSSANSDSALHAMAIPARCALPSVDLLRQAYG
PRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSG
GGLATVVDVANKQQGGHWEYFFGAAETLEERARLASMARHAARLYVRERC
KLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSEDPSLEG
EDLKTAICFRILEKSCSTSEMFNNLSGCSDLNSFLPDTLPETAPTQHQAA
FAAESAAACAGALRLIPLMQPFRRAKMQGEGAVVVQKRAKRHTRRRKILA
GRRRRIRTSNRPRTL*
back to top

mRNA from alignment at E_fasciculatus_S2_contig696:23281..26013-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig696.15099.1 ID=mRNA_E_fasciculatus_S2_contig696.15099.1|Name=mRNA_E_fasciculatus_S2_contig696.15099.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2733bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig696:23281..26013- (Ectocarpus fasciculatus EfasUO2)
ATGTTACCGTTCTTCCTCCTCGCTCTCCTCCCTTTACTTTCGGCGGCATG TGCTCTTGTGTCGGGGTTCATAGGCGATGACCTGTCCGCCGCAAGAGGTG GCGGCTTGGCATTTTGTCTGCAACCCGAGCTCCCTCGACATGGACGCTCG GAAGCCGTGGTGGGAAAGGACGCATCCACCGTGGGGCCGAGGAGGCAGGA GAAGACAGCTATTACGGTGAGCAAGTGAACAAACGAGAAGACAACGCGTG TGTACCCACGGACGATGACATTCATTTGCGTGTGATGCAATGTACCAAAA ATTAGAAGCACAGCAGCAGCAGCCAGCAGCAGCAGAGCAAATTTAGAGTG ACCATGTTCGATGAACGACGGCGTGCATGAAACGAAACCTTGGCGACCCC AAAGTCACCATCTCACCATCACCAGAATGTTAAGTTCGGCTTTTGTGACT CATGGGGGCGTTTCTGTTGTAAAGTGAATACACGTTGGGGTTGGACATCT GATCAGAGCTTTGGCGCCGGTCGGAGAGATAAATGCGGCCAGAAATATCT CGGAAGTGAAGTTGTTGAACAACTTTCTCCGCTCACTCGGCACGCTTGTT GACTTTTTTTTCTGGTACAGCAGTACCAGGATTATCACCAAGATTCGTCG GGGCGCATGGCCTTAATAAGAGTGCAGGATAAGCTCATTTTTCACCTTTG GGTGCACATGCATAGTTAAGCAAGGCCTGTGGCGAGGTCTGATTTCGGGC CCTCTTGGCAGAATGCTTTTGTGTCTTTCGGTATTGTATATAGGAATCCT CCAAATGCATGACATGTCACACCACGTGGATTTGCAATCTCACAACTACA ACTTCACAAGATGAAGTTGGACAGATGCTGAGGGCAACCCGCACACGAGC ATGTCGTCACGGGTAGAGGGGTAAAGCGACCTACCGAGGAGGGCATGGAA TCAACTTCCGGCTCGTGAAGTTCTCCGAGGTTGTGATGTGAAAGGCTTCT GCAATTTCAACGCCCGACCTTCACCCGCTCGAACACATACACATTGTAGT TTGTGCACACGGATCTGGATCTGGAAACGAAAGACTAATCGTTCGAGATC TTTCTATAATACTGCTGTATGCTACCTGACGCCTCCTCGCTGGCCTGCGA CATGTGTTCTTTGTTCTGTGTTCTCGACGTATGCACACAAAACCGTTGCA ATACCTAAATCAGTGCATCCTCCCCCACCCCGTGAATCGAATCAGATGCT GACGACGACGCAAACCTTCGGCGCTGGAAGCATGTGGCCGGCCACCTCCG TATCCGGCGGAATTGGAAGCGGCGCTTCTCGCAATGATGGGGCCAGCCCT GGTCGCCGCCGGCCCCGGGCTCGCACGAGCGGCTCCTCGTCGGCCAACTC CGACTCTGCTCTCCATGCGATGGCTATCCCAGCGCGCTGCGCACTACCGT CTGTCGATCTTTTGCGCCAGGCATATGGCCCCAGGCGTCACTTCTGGGGC GATTTGACTCCGGCGGAGACAAGGAGATTCTACCACGAACTGCTCCCCGT GAGCGTTTATGTGGACGCAGTAGGTGCCAAGGCCCTGTGTGACGGAAATG AGAGACCATTGGGCGGTGGCATGAGCGGGGGTGGTTTGGCTACGGTGGTC GACGTTGCAAATAAGCAGCAGGGCGGGCATTGGGAATATTTTTTCGGAGC CGCCGAGACTCTGGAGGAGCGGGCTCGCCTTGCGTCAATGGCAAGGCACG CGGCGAGACTTTACGTGCGTGAACGCTGCAAGCTTCCATCTCGCGTGGTG GCGCATTTGTATGACGGGCTTCGGCACTTGAAGAGGCATGGAAGTTTCAG GTAAAATGAAGTTTGTTTTGGTTGGTGTTTTGCTTCCTTTTTTCTTTTCT GTTCGCTGGGCTGCATGCTTGGTGTACGGCGGTAGTTGCTCTACTTCCAT TTCTTTGTAACACCTGTTCTGTCCACAACGGTGGTATCGTAGTGTCAGTC TGCGTTTCGGTGGACGAAAATAAGTCTTCCGTACCCACATGGCACGTGTA CAGCAGTTTCCCGTGCACTGCCCGTCCGCACCGCGCTCGTCTACATGTAT GCTGCTCAAACGCCGCGCCCATCACACTCCACATACATTTCACGCTTTGC CCCGTGGGAAGCCTAACGTCCAACCCGTGCGCCGTGGTTCTGCTTCTTGC ATGACTCCGTCTCTCTTTTGTGCATGCTCCCGACACGATCAGGGTGACGG GGGAAACATGGCCCGAATTGTGGGACAAGTACGAGAGGAAAATCCGTTCC GAGGATCCGTCTCTAGAGGGTGAAGACCTCAAGACCGCCATTTGCTTCCG CATCCTGGAGAAGTCGTGTTCCACGAGCGAGATGTTCAACAATCTCTCCG GATGCAGCGACCTCAACTCCTTCTTGCCAGACACGCTACCAGAGACCGCC CCAACACAGCACCAAGCGGCGTTTGCAGCGGAGAGCGCCGCAGCTTGCGC GGGGGCTCTTCGTTTGATTCCGCTGATGCAACCGTTCAGGCGGGCAAAGA TGCAGGGCGAAGGGGCGGTTGTGGTACAAAAGCGGGCCAAGCGGCACACG CGCAGGCGAAAAATCCTCGCGGGACGTCGAAGGCGCATTCGCACCAGTAA CCGCCCTCGCACCCTGTAGGGTGCAGATAATTGTAGTCTTATCCCAATAG AGCCATCTGGCCGGAACGTCCCGGTGAAAAGGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig696:23281..26013-

>mRNA_E_fasciculatus_S2_contig696.15099.1 ID=mRNA_E_fasciculatus_S2_contig696.15099.1|Name=mRNA_E_fasciculatus_S2_contig696.15099.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1248bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig696:23281..26013- (Ectocarpus fasciculatus EfasUO2)
ATGTTACCGTTCTTCCTCCTCGCTCTCCTCCCTTTACTTTCGGCGGCATG
TGCTCTTGTGTCGGGGTTCATAGGCGATGACCTGTCCGCCGCAAGAGGTG
GCGGCTTGGCATTTTGTCTGCAACCCGAGCTCCCTCGACATGGACGCTCG
GAAGCCGTGGTGGGAAAGGACGCATCCACCGTGGGGCCGAGGAGGCAGGA
GAAGACAGCTATTACGATGCTGACGACGACGCAAACCTTCGGCGCTGGAA
GCATGTGGCCGGCCACCTCCGTATCCGGCGGAATTGGAAGCGGCGCTTCT
CGCAATGATGGGGCCAGCCCTGGTCGCCGCCGGCCCCGGGCTCGCACGAG
CGGCTCCTCGTCGGCCAACTCCGACTCTGCTCTCCATGCGATGGCTATCC
CAGCGCGCTGCGCACTACCGTCTGTCGATCTTTTGCGCCAGGCATATGGC
CCCAGGCGTCACTTCTGGGGCGATTTGACTCCGGCGGAGACAAGGAGATT
CTACCACGAACTGCTCCCCGTGAGCGTTTATGTGGACGCAGTAGGTGCCA
AGGCCCTGTGTGACGGAAATGAGAGACCATTGGGCGGTGGCATGAGCGGG
GGTGGTTTGGCTACGGTGGTCGACGTTGCAAATAAGCAGCAGGGCGGGCA
TTGGGAATATTTTTTCGGAGCCGCCGAGACTCTGGAGGAGCGGGCTCGCC
TTGCGTCAATGGCAAGGCACGCGGCGAGACTTTACGTGCGTGAACGCTGC
AAGCTTCCATCTCGCGTGGTGGCGCATTTGTATGACGGGCTTCGGCACTT
GAAGAGGCATGGAAGTTTCAGGGTGACGGGGGAAACATGGCCCGAATTGT
GGGACAAGTACGAGAGGAAAATCCGTTCCGAGGATCCGTCTCTAGAGGGT
GAAGACCTCAAGACCGCCATTTGCTTCCGCATCCTGGAGAAGTCGTGTTC
CACGAGCGAGATGTTCAACAATCTCTCCGGATGCAGCGACCTCAACTCCT
TCTTGCCAGACACGCTACCAGAGACCGCCCCAACACAGCACCAAGCGGCG
TTTGCAGCGGAGAGCGCCGCAGCTTGCGCGGGGGCTCTTCGTTTGATTCC
GCTGATGCAACCGTTCAGGCGGGCAAAGATGCAGGGCGAAGGGGCGGTTG
TGGTACAAAAGCGGGCCAAGCGGCACACGCGCAGGCGAAAAATCCTCGCG
GGACGTCGAAGGCGCATTCGCACCAGTAACCGCCCTCGCACCCTGTAG
back to top