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Homology
BLAST of mRNA_E_fasciculatus_S2_contig6932.15069.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL5_ECTSI) HSP 1 Score: 387 bits (993), Expect = 8.290e-136 Identity = 193/198 (97.47%), Postives = 195/198 (98.48%), Query Frame = 1
Query: 1 MGAPKLLGGVALVGSTVFYVLPMSMHVAFGADIPPSTYFGMAVLIGLPILGFIAFEMWKTLGDNRRIRKERRKLEAIEAQSFGCIQPQVLDSFVVFPVRVSKRGCAASSWVELGEQAVAVNLCAAVKISGAVDTEGPLRRLCEATFGSELDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQGQ 594
MGAPKLLGGVALVGSTVFYVLPMSMHVAFGADIPPSTYFGMAVLIGLPILGFIAFEMWKTLGDNRR+RKERRKLE IEAQSFGCI+PQVLDSFVVFPVRVSKRGCA SSWVELGEQAVAVNLCAA KISGAVDTEGPLRRLCEATFGSELDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQGQ
Sbjct: 1 MGAPKLLGGVALVGSTVFYVLPMSMHVAFGADIPPSTYFGMAVLIGLPILGFIAFEMWKTLGDNRRVRKERRKLETIEAQSFGCIRPQVLDSFVVFPVRVSKRGCAGSSWVELGEQAVAVNLCAAAKISGAVDTEGPLRRLCEATFGSELDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQGQ 198
BLAST of mRNA_E_fasciculatus_S2_contig6932.15069.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V258_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.810e-21 Identity = 54/147 (36.73%), Postives = 85/147 (57.82%), Query Frame = 1
Query: 136 GLPILGFIAFEMWKTLGDNRRIRKERRKLEAIEAQSFGCIQPQVLDSFVVFPVRVSKRGCAASSWVELGEQAVAVNLCAAVKISGAVDTEGPLRRLCEATFGSELDVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMR 576
G ++ A ++K L R R+ + +E++ Q++ CI QVLDS VVFPV+V +R S + +GE+ V V L S + D L+ LC GS+ V V+ G G +GPTGLAVG+ R+ +GP LA+ V +I+++++
Sbjct: 71 GAIVVAVFAHSLYKDLKKKREWREYKHLVESVNEQTYQCITVQVLDSVVVFPVQVRRRDAPVSRFYRIGEEFVQVEL------SQSGDPTPLLQALCRDVIGSDFGVKVWVGAGKSGPTGLAVGIVREGYGPSLANHVGMAIEQSIQ 211
BLAST of mRNA_E_fasciculatus_S2_contig6932.15069.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDG4_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 7.020e-10 Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 1
Query: 121 MAVLIGLPILGFIAFEMWKTLGDNRRIRKERRKLEAIEAQSFGCIQPQVLDSFVVFPVRVSKRGCAASSWVELGEQAVAVNLCAAVK-ISGAVDTEGPLRRLCEATF-----GSELDVIVYCGGGTAGPTGLAVGVGRQNFGPYLA 540
+AV+ GL +L A + + R + +R AI++Q+F C+ PQ FVVFPVRV++RG AAS V L + V L + +G +DTE LR L EA +V+ + G GPTGLA G+ + P A
Sbjct: 120 VAVVCGLILLFSYARDRRRDRARTRGAQSQR----AIKSQTFQCVAPQTPGEFVVFPVRVARRGVAASRVVSLDGDELRVELDTKQRDAAGRLDTEASLRSLLEAALLPRFPTGAAEVVTFYG---EGPTGLAGGLALRRGAPDFA 258
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 597 |
| Hectar predicted targeting category | signal peptide |
| Exons | 6 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_008700.1 |
| Cds size | 597 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842350.4967287-CDS-E_fasciculatus_S2_contig6932:404..485 | 1696842350.4967287-CDS-E_fasciculatus_S2_contig6932:404..485 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6932 405..485 + |
| 1696842350.5089216-CDS-E_fasciculatus_S2_contig6932:3628..3784 | 1696842350.5089216-CDS-E_fasciculatus_S2_contig6932:3628..3784 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6932 3629..3784 + |
| 1696842350.5200686-CDS-E_fasciculatus_S2_contig6932:4352..4420 | 1696842350.5200686-CDS-E_fasciculatus_S2_contig6932:4352..4420 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6932 4353..4420 + |
| 1696842350.5306685-CDS-E_fasciculatus_S2_contig6932:4848..4970 | 1696842350.5306685-CDS-E_fasciculatus_S2_contig6932:4848..4970 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6932 4849..4970 + |
| 1696842350.5393178-CDS-E_fasciculatus_S2_contig6932:5845..5938 | 1696842350.5393178-CDS-E_fasciculatus_S2_contig6932:5845..5938 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6932 5846..5938 + |
| 1696842350.5489316-CDS-E_fasciculatus_S2_contig6932:6708..6785 | 1696842350.5489316-CDS-E_fasciculatus_S2_contig6932:6708..6785 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig6932 6709..6785 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig6932.15069.1 >prot_E_fasciculatus_S2_contig6932.15069.1 ID=prot_E_fasciculatus_S2_contig6932.15069.1|Name=mRNA_E_fasciculatus_S2_contig6932.15069.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=199bp
MGAPKLLGGVALVGSTVFYVLPMSMHVAFGADIPPSTYFGMAVLIGLPIL GFIAFEMWKTLGDNRRIRKERRKLEAIEAQSFGCIQPQVLDSFVVFPVRV SKRGCAASSWVELGEQAVAVNLCAAVKISGAVDTEGPLRRLCEATFGSEL DVIVYCGGGTAGPTGLAVGVGRQNFGPYLASRVAHSIKEAMRLGIQGQ* back to topmRNA from alignment at E_fasciculatus_S2_contig6932:405..6785+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig6932.15069.1 ID=mRNA_E_fasciculatus_S2_contig6932.15069.1|Name=mRNA_E_fasciculatus_S2_contig6932.15069.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6381bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6932:405..6785+ (Ectocarpus fasciculatus EfasUO2) ATGGGAGCGCCGAAGCTTCTCGGCGGCGTTGCACTGGTCGGCTCTACAGT
GTTCTATGTCCTTCCCATGTCCATGCATGTGGTGAGTTTGTGTCTCGTAT
GCGTTTAACAGCAGGGATTCCGTGCTGTGGAGACGCCGCGAAGGTGCTTC
TCTCGAAGTGCGGCAGGATCCAACAACAGGTCTCGTATGTATGCCTACTA
CATTGCACGCTCTATTACAGCGGTGTCTACTGCTCTTCTATGCATATGTA
GTCTGGTGTTCAGAATTATTTTCAACACCAACGGCTGCAGTGCAACCAGC
ATGGGGGGGGTAAGTTGCCCACGGCAAAACTGATTGATGTCTTCATCATC
TGGGTATGCAAATACGCTGCGGCGGTGCCTCTACCGAGCCCGTTGAGACG
TCAACGTTAGACATGAGCTCTGCAAACGTTAGACATCAGCTCTGAATTTC
ACTAGACTATCACACACGGCAGTCGCCCAAATGCAGGTTGAGACGGGTGC
CATTGGTGGATTGATGCATGCTGCAAGCAGAAACTGGGTACTGCCTCTAA
CGGCCCCACCGGTTTCCAGCCACGACACCGAGAGAGTCATGATGCACAAT
GTGTGTGTTGAAGGTCTTATTTCCCGCCGCAACTCCCAGGCTGGGGTAAG
ACAGAGGAAGAGCTGTGATAGCAGTGGATTGAGAGGGGGGGTATGCTTCG
CCCTTTTATCTACAGCAGTAGGCGTGCAACAAGGGTGTTGTTGAGGCAAC
AGCACCTTCACTGAAGGAAGTCGCTGTACAGCTACATATCTTCTCATGTG
AAGCTGCAGGAGTAGCTGGCTGGGATGCGAGGTCAGGTAAGGCAAACACA
CAGTTATTGTCCCCATCCGACCCCAAGCTGTCTTCACCTGATGGTTACAG
ACTTGGCAAGGCCTTCACAATACCTCGCCAAACCTATGCAGTAGGACAAA
GTCATTCTTGTACTGCAAGTACTAGTACTCCCACGAGGTGCGCTTGTCAC
CTGTGTTTGCGCAAATGAGAAAATAAAGAAAAGGCTGGGAAAGTATACAT
GTCAAGCCTACCGTACACGACACAAGATAACACACCCCCTGGGCCGATTT
TCAAAGCTCGACTACTCCACGACGAAGGGGATGCATCAACGAAACGATGC
ATTTTCGGAAAGATCTAGAGGAGACGACTTCAACGCCGCCCTTTTCGGCG
CTGTGATTCAATCTGCTGTTGAGAAATCGGGCTTTGAAAAATCGGTCAGG
GGGTGTGTTATCTTGTATCGTATTCGGTAGAGCGTGGTACACTCACGATT
CTCCGCAACCCATGGACCTATTGAGTATGGGAGAGCTTGTCTTGGTGCAA
GACAATTTCAGCAGCAGTCGGAGACACATTTGTATGTGCTGTTTCACCCC
TTGCGTACTGTTGGGGCTGCTCCGTGTGTCGTACTACTACTATCCGCGAC
CGCTTTCGTTCTTTCGCCGTCCCAGTTTCCTGATATTCTCGACGTCGGTC
CTTACATCTCCTGGTACAATTCTGGACGAGCTGTAAATTCGGACAATCCC
GGTGCCCGCGATAGTGCTGGCTTCCGCGTACCGGTATCTACCACTGATGA
CCCCGCACTGCTTGCGAGCCGTGCAATTTCTTGCCCAGAAATACTTCAAT
AATAGTCTGCGGGCAACCTTGGCCTCATCTGAAGCCCTTTTTCCTTTCGT
TCCCGGGGAGGGGAGTATAGGGTACGTATGGGTAGGGTGGAGTGTGATAG
GAGTTGGTATGATCAAGCAAGGAGGAAACAAGCTGGGTTCTGTTTTTGAC
TTGAAAGAACCCCCTCACTCGACGTGCGCACGAGGAGGAAGTGGAGCGGG
TGAACAGACCGGGATCCGCCGGCCGTGACTATGGTATCCATGGGCGCCAG
ATTTTGAGCAGGATCGGAAAGACCACTTTTCGACGGGTATAGACGGGCAA
AGATTTCAAGTCCGACATTACAAATGCACGCGGGGAGTCGAAATATACGC
GGAAAAATGTAGTCCGACCAGACGAGAAATTCAGGCAGAACAACTACGAG
GGACGGCGGCCGGGTCAGGCGCGAAAAGCACTCACCATATATAAGCGCGA
GGGCAAAGTGGACTCAAGTCTGACGAGTGAAATACACGCGCGAAAAAATG
AAGTCGAAATAAACGCGGAAAATGTAGTCTGACCAGTCGAGGAAACAAGG
TAGCAAATCTATAGGTGGAACTCAGGTTCCCGAAACAAGAAACGCACAGG
ACGATGAAAACAAAATTGGACACAAGTCCGTTCTGCAGGATCAAGGCGTT
CTTGCCTTCTTGGCGGAAATCAGGTCACAAAAACAAAACCCGCGCACAGG
ACGAGTATGTTTTTGTGACCTGATTTTCGTACCTCCACCGCAGTCTTTGG
CTGTTGTGCGTTGAAGCCAGCCACCGTTGCTTACTGGGACCCTGGCATGC
TAAGACAACGGTGCCAGTAGTGCTGTGTACTGGTTCCTTCCGGTATTCAT
CTTCTCGTTTTTCGTCGTCTGTTCGCCACGTCGGCTCTCCTTAGCTTAGT
TAAATCGTGTACGACCGAACCCGGCGCACGTACCAAAATGTGTTCGATTA
TTTGTTTTCACGGCAATGTGACGTGAAAAGACCGCGCCATTCAGAGCAGC
TCTTTTGCGATGACAGTGCTTTTTGGGGAGTCGCGAGGCTCTCTGAAGCC
GAGAGAGTAGGCTAGGTCAGCCCTTGCATGCTGCAAGGCATGGTTAGCAG
TCCTATCAGCGGCAAGCTTCGTTCGCCACGGGATCTGCTGCCCTGAAACT
GTACTTCCTTCTGTATCGGTTGGAGTTTTTTTTGCGCGGGTATGCTCCTC
GCCCTTCTCCTGTGCCTTCCTCTTCTTACACAACCCCGGCTACTGGCAAC
TTGTTACCGGTCGTTCTGCCGCCGAACGTGTTTTTTTGTTTGCTTCGAGC
CTTCATTTTTTTCCCCGAAATACGAGCACTTTCTACCGCAAAGGCGGTGG
CCCGTCCGGGTATTTTGCTTTCCTCGCTGGGTTTTTTTTTTGTGCTCTTC
TCGCACGCCCGTTTGCGGGTGCTCTCTTGTAGCCGCGGCTAGACATTCCG
GTAGGGAGCCTAAAACAATGCAATCGGGGCATGAGCTGTCAGGTCGGTGA
GCCGCAGCCATCCCACTACCACCAATATACCTTAGTGCTGCGCTCTGAAT
CAGCATGTGTTAATCGTGGTACAGGCGTTCGGCGCGGATATTCCCCCCTC
CACCTACTTCGGCATGGCGGTGTTGATTGGGCTGCCGATCTTGGGTTTCA
TCGCTTTCGAGATGTGGAAGACTCTGGGCGACAACCGGCGGATTCGAAAA
GAGCGGCGCAAGCTGGAGGCCATCGAGGCGGTGGGGTTTTTTGCTGTGTC
GTTCAAGCAGCAGCTTTGTGGCGTCCACAACTCATCTCGCTTCGTTAATC
GTCCGATGTGTTCAGGGTGCACTTGTTTTCACCCGGAGATGTGTATGGAA
AAGGGAAGCATTCCCGGTCCTGTTTCCCTTGGCCATACATACGGTTTTCT
CGAAACCGAGCTTTTCAGTAACCAAGAATATTGTGCATGTGGCAGGTGTT
TTCCCAGCGCATTCTCTCGCCGCAGACATCTTCATGATGCCGAACCCAAG
TTGACCCGCGCTCTAGGTGACAATCGCCCCTCTTCTGCGACGTCCGAACA
ATTCCAGACGGGTTTTGCGTGAGAACCTGAACCGCGATGCTACCTCACTT
CTGCAGAATTTGATTGAATTCCCATGGCGCTGTAATACATGCATCCACCG
ACCGGCCCTGTTGAGGTGTACGTGCTACGAAGTCTCGGTACCCCGAACTG
GGTTCGCGGAACGCTTGCGATCCTTCCCCCTCTCCGCGCATATTTCCGTC
CATCCACCACAACCCACCCACCCCCCCTGCCTTCATGTGTCGAAACAGCA
ATCGTTTGGCTGCATCCAGCCGCAGGTGCTGGACTCCTTTGTCGTGTTCC
CGGTTAGGGTCAGCAAGTGAGTCGGTCTCCACAGCACGAGATCCGGGGGC
GTCATGTACATGGCTTCCCTGGATTCGCATGTCGTTTCGCTCTGTCCTGC
CCGTCTAGCGCAGGCGTTCGTTGCTTTGCTGGTGACTCAGTCGTTAATGT
CACGGGTGGCACACGGTATGTTTGGGCTTTGTATCGTGTGCATACACATG
CCGACCCGGAACCGACCATAGCCGGTGTTCGGCATTGGATGCTTCTACTT
ATGAAGATCAGGCGTTTGTCATTGAGCCCGGCCGGAGTTCTGCTTTCGCC
CTTGGCTACTTGGGCTGTCGTGGTCCTTCCTTTCGCAAGACTAGCCCATC
CATCGGCCCACCCCTCCCTTCGTGCAACTGTGTACATATGCATACGATAA
ACAATCAATCGCCGTCGCACCACTCGTCTCATCATTGGTCTCAGGCGCGG
CTGCGCTGCTTCTTCTTGGGTAGAATTGGGAGAGCAAGCCGTGGCGGTCA
ATCTCTGCGCCGCCGTTAAAATTTCTGGGGCGGTGGACACGGAGGGCCCT
TTGAGAAGACTGTGCGGTGAGAGCCGTGCCGCACGCTGCAGCGCACACGT
TTCTCGCATTTATCTACGAGACATGGAAACTTTTGTGGCGGGGGGGGGCG
GTTGAGGCACGATGTCAGGTGCTTCGTTGCCAGGCGGCACGGCAGTCTAG
CCCTAGCTGTATTGTACCTGTTTCACGCATGGAAAGGCTCTAATGGTCAC
AGTGCATGCAGCTAGCGTATCTTGAAGGCTGTTTTCCTGACCGTCCTCTG
GGACAGAAGTTTTTGCACTACTGCCTGTACACCATGGATGAGTTCCGCTC
CCCGCACGCATAGTTTCTCAACACACTTACTACTACGTATATATTTTCCG
CCGAGCCGGGCACACAAGCTTTGAGTCCCTCTCCTAATAGTCCCGATAAT
AGTATTCACGGTTTCAAATGTGAAGACAACAACAAGAACAACAACAGTTC
GCCAAACAACTTCGTCTCGCCATGGCACAGCAGTGTTGTGCTTGAATGTG
GGATGGACAGTCTCTATCGGCCCACAGAAAGTTACATCATATGCCAATTG
CCGAGGCTCCAATGCCCATGTTTCCGGCCTTGGTTCGAGGAGTCTTCCTG
GATTCCTTTCTTTTGAGAGCAGCAAACGATTGTCCTGGCTTCTTCTTGCG
GAGGTTGCACCTCCCGCTTCTTGAAACCCGTGTTTTTTTTCCCAGCGTCT
TGTATGCTTTCTTTTTTGTTTTGCACTGCTTGAGGAACTTTGAAGTTTGG
TGGGAAACGTTATATGGGAGAGAGCAGCCACCGTTAGTATGTTCACGACA
ATAAATGGTCGTTGCGCTAGAAAGATCTTCTCACGATGTCACGCACTCCT
ACCATTTCCCTGTGCCGTCGACTCTGCGAAACCGTTGTCAGAGGCGACGT
TTGGTTCGGAGCTGGACGTGATCGTGTACTGCGGCGGTGGGACAGCAGGA
CCGACGGGGCTAGCGGTGGGAGTAGGGCGTCAAAGTGAGTTAGTTTCCTG
GTCATCGAATTTATTTCGCCTGGCTGCGTGGTCCCACTTCTGTCATGCTG
GGGCTCTCGTAAACGTCGCACTCGCGTCGCCGTGCCGCTCTGGTTGTTGA
CGTTCGTGCATGTGTGGGGCCTCGACAATAGCAGTCACAAGTTGCGTTGA
TCCCGGAACGACCGGTTCGGCGGAGGTCACTTGACCTATTTTCGAAGGAG
GCAATATCTGGCTTCACTAATATATATGTTTCCCTTTGGTGTCTTGCTCT
TCGAACGGGTCCGTAGTGGCCGAGGCGTCCTTGTCAGTCGTTGATGTGCA
CGCGCAGTTGCCGGCCAACTGTGCCTGCCGTGTCAAGGCTGTTGCCTGCG
TGGTTTCCGGGGTTGCTGCGTTTTTTGCTCGCAAGAAAAGCTTCCTGTTG
TTCCGTGAATGGTGCTGCAGGGTTGCTGCGAATCAAACAGGGTCGTAGGC
ACCTCGATCGTGCGCCTGGTGGCAGGACACGGGGTCGTGTGTCGCAGGTC
CTCTTGCTTGTAGATCGCTCGTGCCAGCATGCTGTTCTAGTCGCACGGGT
CGTTGTTGTCTTCCTCGATAATTCTTGGATGAACCACTTTGGTGGATAAA
CCCCCTCCACCGTAACTCGTCCTCGTCGCATAGTTGAGTTATTGCGGCTA
CGATTGTCACCGTACGGCATCGACTGTTGGCTTCCTTCTCACTTCTCCCT
TCCAACTCCGGCTCCATGCTGTCTGTCCCCGCTGAACTCTCCGTTTCGTT
TCAGACTTTGGGCCGTACCTAGCCAGCCGCGTGGCGCACTCTATCAAGGA
GGCCATGCGACTCGGGATCCAGGGTCAATGA back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig6932:405..6785+ >mRNA_E_fasciculatus_S2_contig6932.15069.1 ID=mRNA_E_fasciculatus_S2_contig6932.15069.1|Name=mRNA_E_fasciculatus_S2_contig6932.15069.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=597bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6932:405..6785+ (Ectocarpus fasciculatus EfasUO2) ATGGGAGCGCCGAAGCTTCTCGGCGGCGTTGCACTGGTCGGCTCTACAGT GTTCTATGTCCTTCCCATGTCCATGCATGTGGCGTTCGGCGCGGATATTC CCCCCTCCACCTACTTCGGCATGGCGGTGTTGATTGGGCTGCCGATCTTG GGTTTCATCGCTTTCGAGATGTGGAAGACTCTGGGCGACAACCGGCGGAT TCGAAAAGAGCGGCGCAAGCTGGAGGCCATCGAGGCGCAATCGTTTGGCT GCATCCAGCCGCAGGTGCTGGACTCCTTTGTCGTGTTCCCGGTTAGGGTC AGCAAGCGCGGCTGCGCTGCTTCTTCTTGGGTAGAATTGGGAGAGCAAGC CGTGGCGGTCAATCTCTGCGCCGCCGTTAAAATTTCTGGGGCGGTGGACA CGGAGGGCCCTTTGAGAAGACTGTGCGAGGCGACGTTTGGTTCGGAGCTG GACGTGATCGTGTACTGCGGCGGTGGGACAGCAGGACCGACGGGGCTAGC GGTGGGAGTAGGGCGTCAAAACTTTGGGCCGTACCTAGCCAGCCGCGTGG CGCACTCTATCAAGGAGGCCATGCGACTCGGGATCCAGGGTCAATGA back to top
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