mRNA_E_fasciculatus_S2_contig6914.15051.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6914.15051.1
Unique NamemRNA_E_fasciculatus_S2_contig6914.15051.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6914.15051.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 5.000e-119
Identity = 369/626 (58.95%), Postives = 390/626 (62.30%), Query Frame = 2 
Query:    8 RSYGGVSYVKLASPVSVPLELDLERFCSAYTGNAPAEDLGKEVDSLGG*VSPAPPTPAPAPPRRSPAFAXXXXXXXXXSERHRNPPPVQAAAVPVGRSGPLMTIRLTCSREKAGHRRH*HRRAETVSAKVEVAPAAVSAEASPRG*TGGRWDHWGKRRTXXXXXXXXXXXXXXXXXXXXPRGGKGWPKKRRTAVPLPAAGTAA------------RTMTR*RAATAXXXXXXXSASGLAAKSITSTLNKSNDASGRYDHRRSPLTGMGLSPLGGTGRGSGRLLSGG-GGGRRPELGRSDLRMADRTSAGLLAERELKRKRRQEIDDDNEKQLEEALAASKVEAFGPEGEAQEDEEADLAKAMCLSQEGGGGG----CSDDWACVACTFINEAAMVLCGMCGTPMPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VVGLGDVRQRTAQXXXXXXXXXXXXXXXXXXXXXXNSPPKPLP-EQPQATRVPRKGPLRARYELRGILHHLGRHAFTGHYVTDVREEGSGGXXXXXXXXXXXXXXXXXXXXXXXKAG------HEGGGKGWKRYDDSVVSPVTEAEALGGEAQRTCYLCFYSLVVDA 1807
            RSYGGVSYVKL+SPVSVPLELDLERFCS YTGNAPAEDLGK+VDSL G          P  PR   AFA             R  P                      S +           + T S +  V        A+P             RR            XXXXX     RG +    +RR                         T +R R+              +       +LNK N A G  D RRSPL G+GLSPLGGTGRGSGRL SGG GGGRR +LGRSDLRMAD  SAGLLA+R  KRKRRQEIDDDNEKQLEEALAASK EAFGPEGEAQEDE ADLAKA+CLSQEG        CSD+WAC ACTFINEA+MV C MCGTPM EPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VV LGDVRQ TA+        XXXX    XXXXXX         EQPQA RVPRKGPLRARYELRGILHHLGRHAF GHYVTDVREEG GG  XXXXXXXXXXXXXXXX               EGGG+GWKRYDDSVVSP+TEAEALGGEAQRTCYLCFYSLV DA
Sbjct:  882 RSYGGVSYVKLSSPVSVPLELDLERFCSGYTGNAPAEDLGKQVDSLDGLGI------LPRAPRSPSAFASLRAAGTGLCAAIRAAPKSAXXXXXXXXXXXXXRASDDVSVDLFAREGWSSTSSLTSSGRDGVGEGGGGGSAAPGV----------NRRALGPLGETTNSSXXXXXIGDRRRGIRETVAERRXXXXXXXXXXXXXXXXXDRWADQDETTSRNRSHKLHNNVCLGPDGKVDYLDTLRSLNKPNSAGGLRDRRRSPLPGVGLSPLGGTGRGSGRLFSGGDGGGRRSDLGRSDLRMADHASAGLLAQRAFKRKRRQEIDDDNEKQLEEALAASKREAFGPEGEAQEDEAADLAKAICLSQEGXXXXXXXXCSDEWACAACTFINEASMVACVMCGTPMSEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVALGDVRQWTAEDASPQPQPXXXXGRGDXXXXXXXXXXXXXXXEQPQALRVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREEGGGGGRXXXXXXXXXXXXXXXXGIVGAAGSWGXXXXREGGGRGWKRYDDSVVSPLTEAEALGGEAQRTCYLCFYSLVEDA 1491
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BLAST of mRNA_E_fasciculatus_S2_contig6914.15051.1 vs.
Match: RanBP2-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 1.160e-78
Identity = 173/289 (59.86%), Postives = 181/289 (62.63%), Query Frame = 2 
Query:  956 KQLEEALAASKVEAFGPEGEAQEDEEADLAKAMCLSQEGGGGGCSDDWACVACTFINEAAMVLCGMCGTPMPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VVGLGDVRQRTAQXXXXXXXXXXXXXXXXXXXXXXN-SPPKPLPEQPQATRVPRKGPLRARYELRGILHHLGRHAFTGHYVTDVREEGSGGXXXXXXXXXXXXXXXXXXXXXXXKAGHEGGGKGWKRYDDSVVSPVTEAEALGGEAQRTCYLCFYSLVV-DAE 1810
            +QLEEALAASK EAFGPEGEAQEDE ADLAKA+CLSQEGGGG CSD+WAC ACTFINEA++V+CGMCGTP+PEP                                                    VV L DVRQRTAQ                        SPP    EQPQA RVPRKGPLRARYELRGILHHLGRHAF GHYVTDVREE SG XXXXXXXXXXXXXX                G+GW RYDDSVVSPVTEAEALGGEAQRTCYLCFYSLVV DAE
Sbjct:   18 RQLEEALAASKREAFGPEGEAQEDEAADLAKAICLSQEGGGG-CSDEWACAACTFINEASVVVCGMCGTPLPEPLPPSSPGTPPAETDMSSVAGDSGGGSADGKSGERCGVQRRGSGARGGGDDEAVVALSDVRQRTAQDASPQPQPPAPLARGDDVKKKQQESPPXXXXEQPQAPRVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREERSGXXXXXXXXXXXXXXXSQGGKTEREXXX----GRGWSRYDDSVVSPVTEAEALGGEAQRTCYLCFYSLVVADAE 301
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BLAST of mRNA_E_fasciculatus_S2_contig6914.15051.1 vs.
Match: USP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 4.680e-49
Identity = 130/188 (69.15%), Postives = 139/188 (73.94%), Query Frame = 1 
Query:  148 GLGIPRAPHPRSRSPSAFASLRAAQTGLCDAIRAAPKPAAGTSGXXXXXXXXASDDDSVDMFAREGWSSASLTSSGRDGVGESRGGTGGGIGGSVAPGVNRRALGPLGETTNSSXXXXXXIGYRGRGIPETKAERRQRVAKEKENSSATAGGGDRCADHDEMTSRNRSRKLNNDVCLGPGGKVDYLNT 711
            GLGIPR P    RSPSAFASLRAA TGLC A R+ P PA G            +D  SVD+FAREGWSS   TSSG+ GVGE      GG GGSVAPGVNRRALGPLGETTNSSXXXX  IG R RGI ET AERR+RVAKEKEN SA +GGGDR AD DE TSRNRS KL+N+VCLGP GKVDYL+T
Sbjct: 1028 GLGIPRVP----RSPSAFASLRAAGTGLCAANRSGPNPAGGGG------EKRPTDGVSVDLFAREGWSS---TSSGQAGVGE------GGGGGSVAPGVNRRALGPLGETTNSSXXXXG-IGDRRRGIRETVAERRERVAKEKENCSAASGGGDRWADQDETTSRNRSHKLHNNVCLGPDGKVDYLDT 1195
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BLAST of mRNA_E_fasciculatus_S2_contig6914.15051.1 vs.
Match: USP (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.220e-13
Identity = 48/110 (43.64%), Postives = 55/110 (50.00%), Query Frame = 2 
Query: 1466 QATRVPRKGPLRARYELRGILHHLGRHAFTGHYVTDVREEGSGGXXXXXXXXXXXXXXXXXXXXXXXKAGHEGGGKGWKRYDDSVVSPVTEAEALGGEAQRTCYLCFYSL 1795
            +A R PR  PL+ARY L  +LHHLG HAF GHYV  VR   SGG                             G   W+RYDDS V  V E +A+GG A+ TCYL FY L
Sbjct: 1270 EAPRPPRDAPLKARYRLAAVLHHLGPHAFAGHYVACVR---SGG-----------------------------GAARWRRYDDSEVRDVAERDAVGGAARATCYLAFYEL 1347
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BLAST of mRNA_E_fasciculatus_S2_contig6914.15051.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J8P6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.500e-5
Identity = 39/113 (34.51%), Postives = 51/113 (45.13%), Query Frame = 2 
Query: 1463 PQATRVPRKGPLRARYELRGILHHLGRHAFTGHYVTD-VREEGSGGXXXXXXXXXXXXXXXXXXXXXXXKAGHEGGGKGWKRYDDSVVSPVTEAEALGGEA-QRTCYLCFYSL 1795
            P A+R   K     RY LRG++HH+G  A +GHY  D VR +G+G                         AG EG  + W  +DD V +P T  + LG E  QR  Y+  Y L
Sbjct:  693 PSASRGTAKAAASRRYGLRGVVHHIGGTASSGHYTADSVRTDGAG----------------------LLVAGGEGERRRWVDFDDRVTTPTTREKVLGNERNQRNAYMMLYEL 783
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6914.15051.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized5.000e-11958.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
RanBP2-type1.160e-7859.86domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
USP4.680e-4969.15domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
USP7.220e-1343.64domain-containing protein n=1 Tax=Tribonema minus ... [more]
Ubiquitin1.500e-534.51carboxyl-terminal hydrolase n=1 Tax=Odontella auri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6914contigE_fasciculatus_S2_contig6914:4928..7640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score178.3
Seed ortholog evalue4.3e-42
Seed eggNOG ortholog2880.D7G2P5
Model size1901
Hectar predicted targeting categorymitochondrion
Exons4
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
Cds size744
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842348.961558-CDS-E_fasciculatus_S2_contig6914:4927..53201696842348.961558-CDS-E_fasciculatus_S2_contig6914:4927..5320Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6914 4928..5320 +
1696842348.9726949-CDS-E_fasciculatus_S2_contig6914:5419..55961696842348.9726949-CDS-E_fasciculatus_S2_contig6914:5419..5596Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6914 5420..5596 +
1696842348.9829438-CDS-E_fasciculatus_S2_contig6914:5927..61011696842348.9829438-CDS-E_fasciculatus_S2_contig6914:5927..6101Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6914 5928..6101 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842349.0000985-UTR-E_fasciculatus_S2_contig6914:6101..63181696842349.0000985-UTR-E_fasciculatus_S2_contig6914:6101..6318Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6914 6102..6318 +
1696842349.0132132-UTR-E_fasciculatus_S2_contig6914:6702..76401696842349.0132132-UTR-E_fasciculatus_S2_contig6914:6702..7640Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6914 6703..7640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6914.15051.1prot_E_fasciculatus_S2_contig6914.15051.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6914 4928..6101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6914.15051.1

>prot_E_fasciculatus_S2_contig6914.15051.1 ID=prot_E_fasciculatus_S2_contig6914.15051.1|Name=mRNA_E_fasciculatus_S2_contig6914.15051.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=248bp
RRPVLRRRVVRQAGVAGVGPAGAGPRAVLLGVHGQRPRRGPRQGGGLPWG
LGIPRAPHPRSRSPSAFASLRAAQTGLCDAIRAAPKPAAGTSGGGAGGQK
RASDDDSVDMFAREGWSSASLTSSGRDGVGESRGGTGGGIGGSVAPGVNR
RALGPLGETTNSSSSGGGGIGYRGRGIPETKAERRQRVAKEKENSSATAG
GGDRCADHDEMTSRNRSRKLNNDVCLGPGGKVDYLNTQQEQRREWSL*
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mRNA from alignment at E_fasciculatus_S2_contig6914:4928..7640+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6914.15051.1 ID=mRNA_E_fasciculatus_S2_contig6914.15051.1|Name=mRNA_E_fasciculatus_S2_contig6914.15051.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2713bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6914:4928..7640+ (Ectocarpus fasciculatus EfasUO2)
CGGCGGCCGGTCCTACGGCGGCGTGTCGTACGTCAAGCTGGCGTCGCCGG
TGTCGGTCCCGCTGGAGCTGGACCTCGAGCGGTTCTGCTCGGCGTACACG
GGCAACGCCCCCGCAGAGGACCTCGGCAAGGAGGTGGACTCCCTTGGGGG
CTAGGTATCCCCCGCGCCCCCCACCCCCGCTCCCGCTCCCCCTCGGCGTT
CGCCAGCCTTCGCGCCGCCCAGACCGGCCTCTGTGACGCCATCCGAGCGG
CACCGAAACCCGCCGCCGGTACAAGCGGCGGCGGTGCCGGTGGGCAGAAG
CGGGCCTCTGATGACGATTCGGTTGACATGTTCGCGCGAGAAGGCTGGTC
ATCGGCGTCATTGACATCGTCGGGCCGAGACGGTGTCGGCGAAGTCGGCG
GTGGGGCCGAAAAGCACAACGGCGGCAGCAAGCGTTCCCGGGTGGGGGAG
GAAGAAGAAGGCCACCCTTGTCGGTTCCCGCCGCAGCGAGAGAGTCGAGG
TGGCACCGGCGGCGGTATCGGCGGAAGCGTCGCCCCGGGGGTGAACAGGC
GGGCGCTGGGACCACTGGGGGAAACGACGAACAGCAGCAGCAGCGGCGGC
GGCGGCATCGGCTACAGGGGGAGAGGCATCCCGGAGACGAAAGCCGAGAG
GAGGCAAAGGGTGGCCAAAGTGATTGATGGCCGTCGGGGTTTGTTCGCGT
TCATGCCTGCTCGTCGTGTGTTGATGCGTGCTCTGGGGTTGTGCGTGCAA
GGTCCGACTAAAGGGGGGTGTTGTTGTTGTTGCTGCTGTGCTGCTGGCGC
GAAGGCGCATGGGAGTACTTTTTCCGTTCGCGCAGGCTCATTTTTAATAG
TTGTTTAGAAGGAGCCCCACCAACCCCGCTTGCGTATGAATGTGCATGTG
CATAGTCGTCGCGTGCGATTTGGTCTCTTTAGCCACGAAAACTTTGATCG
ATCGACGACGGATCTCTCTCCCATGCATCTATGAATGCATTCCGCATCAG
GAAAAGGAGAACAGCAGTGCCACTGCCGGCGGCGGGGACCGCTGCGCGGA
CCATGACGAGATGACGAGCCGCAACCGCAGCCGCAAGCTCAACAACGACG
TCTGCCTCGGGCCTGGCGGCAAAGTCGATTACCTCAACACTCAACAAGAG
CAACGACGCGAGTGGTCGTTATGATCACCGGCGGTCACCCCTCACGGGGA
TGGGTCTTTCCCCGCTCGGCGGAACGGGGAGAGGATCGGGGAGGCTGCTT
AGCGGCGGCGGAGGCGGGCGCCGCCCGGAGCTCGGTCGGAGCGACCTCCG
GATGGCCGACCGTACAAGCGCGGGGCTGTTGGCGGAAAGGGAGTTGAAGA
GGAAGAGGAGACAGGAGATCGACGACGACAACGAGAAGCAGGTGTGGGGA
GTCGATAATAGTGTGCCTTCCCCGCTGGTGGGCGGTGGTGCGTGTTGACC
CTGTGGTGGGTTTTGTTGTCGGGCCTGAGCTTCGCCGGCTTTTTCCCACC
GTGCCAACTCGGTTCGGCAGGAGCAGGGCGCGAGATGATCGGTGGCACAG
CTGGGCGCTTTGGCATTGGACGCCCCTAGCACGGACCAATGTTTTCCTAC
TTAACCGCTCCCCTCTAGCCAATTGTCTAGGAGCTAAGGCACGCAAGATA
TGAGCCCCCTCCCCCCCCCCCCCTCACTGTCCTCTCGAGGACGCGTGGTC
TATAGTCTAACGACTAGGCATGCAAAACATGAGTATGCCCCCCCCCACCC
ACCCCCACCCACGGCGACGCGGCAGTTGGAGGAGGCCCTCGCGGCGTCGA
AGGTGGAGGCGTTCGGCCCGGAAGGCGAGGCTCAAGAGGACGAAGAGGCA
GACCTCGCGAAAGCAATGTGTTTGAGCCAGGAGGGCGGCGGCGGTGGCTG
TAGCGACGACTGGGCGTGCGTGGCGTGCACGTTCATCAACGAGGCTGCCA
TGGTCCTGTGCGGCATGTGCGGAACGCCTATGCCAGAGCCACCGCCGCCT
CCGGGCACCCCTCCTGCGGAGAACGAGATGAGCAGCCTCGCCGGCGACGG
CGGCAATGGCGGGAGCGTCGACGGAAAGAGCGAGGAGAGTCGCGGAGCAC
AACGGAGATCCGGGGCAAGAGGAGGGGGCGAGGAAGAAGCGGTCGTGGGC
CTGGGCGATGTCCGGCAGCGCACTGCGCAAGACGATTCACCGCAACCACC
GCCACCGCCGCTCGCGAGAGGCGACGACGCCAAGAAGAAGCAACACAATA
GCCCGCCGAAACCACTACCGGAGCAGCCGCAGGCCACGAGGGTCCCCAGG
AAGGGGCCCCTGCGCGCCCGGTACGAGCTCCGCGGCATCCTGCATCACCT
CGGGCGGCACGCCTTCACCGGGCACTACGTCACCGATGTCCGCGAGGAAG
GGAGTGGCGGCGGCAGCGGGGGCAGCGACGGCGGCAGTGGCAGCGGTGGT
GATGGTGGTGATGGTGGGGTGGCTGGGGCCAAGGCGGGGCACGAGGGCGG
AGGGAAGGGTTGGAAGCGGTACGACGACAGCGTGGTTTCTCCGGTGACGG
AGGCGGAGGCCCTCGGCGGGGAGGCGCAGCGGACGTGCTACCTCTGCTTC
TACTCTCTGGTGGTGGACGCCGAGTAGATGATGATGTTAGGGATGGTTTC
TCCCCCTGTTCTGCTTGTCGAGTAGAGAAGGTGTGTTTGCAAGAATCTCC
CCCTTGTCGTCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6914:4928..7640+

>mRNA_E_fasciculatus_S2_contig6914.15051.1 ID=mRNA_E_fasciculatus_S2_contig6914.15051.1|Name=mRNA_E_fasciculatus_S2_contig6914.15051.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=744bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6914:4928..7640+ (Ectocarpus fasciculatus EfasUO2)
CGGCGGCCGGTCCTACGGCGGCGTGTCGTACGTCAAGCTGGCGTCGCCGG
TGTCGGTCCCGCTGGAGCTGGACCTCGAGCGGTTCTGCTCGGCGTACACG
GGCAACGCCCCCGCAGAGGACCTCGGCAAGGAGGTGGACTCCCTTGGGGG
CTAGGTATCCCCCGCGCCCCCCACCCCCGCTCCCGCTCCCCCTCGGCGTT
CGCCAGCCTTCGCGCCGCCCAGACCGGCCTCTGTGACGCCATCCGAGCGG
CACCGAAACCCGCCGCCGGTACAAGCGGCGGCGGTGCCGGTGGGCAGAAG
CGGGCCTCTGATGACGATTCGGTTGACATGTTCGCGCGAGAAGGCTGGTC
ATCGGCGTCATTGACATCGTCGGGCCGAGACGGTGTCGGCGAAAGTCGAG
GTGGCACCGGCGGCGGTATCGGCGGAAGCGTCGCCCCGGGGGTGAACAGG
CGGGCGCTGGGACCACTGGGGGAAACGACGAACAGCAGCAGCAGCGGCGG
CGGCGGCATCGGCTACAGGGGGAGAGGCATCCCGGAGACGAAAGCCGAGA
GGAGGCAAAGGGTGGCCAAAGAAAAGGAGAACAGCAGTGCCACTGCCGGC
GGCGGGGACCGCTGCGCGGACCATGACGAGATGACGAGCCGCAACCGCAG
CCGCAAGCTCAACAACGACGTCTGCCTCGGGCCTGGCGGCAAAGTCGATT
ACCTCAACACTCAACAAGAGCAACGACGCGAGTGGTCGTTATGA
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