mRNA_E_fasciculatus_S2_contig691.15046.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig691.15046.1
Unique NamemRNA_E_fasciculatus_S2_contig691.15046.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig691.15046.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS22_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 9.930e-28
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 ARARERQSGAARRARGGDVSDAEAGKRMMDKRREVESTAQSRQMMAQRRNLPAYLQREDIVKTIRDNQ 204
            ARARERQSGAA  ARGGDVSD EAGKRMMDKRREVESTAQSRQMMAQRRNLPAYLQREDIVKTIRDNQ
Sbjct:  461 ARARERQSGAAGHARGGDVSDKEAGKRMMDKRREVESTAQSRQMMAQRRNLPAYLQREDIVKTIRDNQ 528
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig691.15046.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.930e-2895.59protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS22... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig691contigE_fasciculatus_S2_contig691:3575..4434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score116.3
Seed ortholog evalue5.5e-24
Seed eggNOG ortholog2880.D7FS22
Preferred nameDHX29
Model size206
KEGG koko:K18995
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016282,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043021,GO:0043024,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046483,GO:0070035,GO:0070993,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0920@2759
EC3.6.4.13
Cds size204
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842348.4823296-CDS-E_fasciculatus_S2_contig691:3574..37031696842348.4823296-CDS-E_fasciculatus_S2_contig691:3574..3703Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig691 3575..3703 +
1696842348.49585-CDS-E_fasciculatus_S2_contig691:4357..44321696842348.49585-CDS-E_fasciculatus_S2_contig691:4357..4432Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig691 4358..4432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig691.15046.1prot_E_fasciculatus_S2_contig691.15046.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig691 3575..4432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig691.15046.1

>prot_E_fasciculatus_S2_contig691.15046.1 ID=prot_E_fasciculatus_S2_contig691.15046.1|Name=mRNA_E_fasciculatus_S2_contig691.15046.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
ARARERQSGAARRARGGDVSDAEAGKRMMDKRREVESTAQSRQMMAQRRN
LPAYLQREDIVKTIRDNQ
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mRNA from alignment at E_fasciculatus_S2_contig691:3575..4434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig691.15046.1 ID=mRNA_E_fasciculatus_S2_contig691.15046.1|Name=mRNA_E_fasciculatus_S2_contig691.15046.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=860bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig691:3575..4434+ (Ectocarpus fasciculatus EfasUO2)
GCACGGGCGAGGGAGCGGCAGTCGGGGGCTGCGAGGCGTGCGAGGGGCGG
CGACGTCTCCGACGCGGAAGCGGGGAAGCGCATGATGGACAAGAGGCGCG
AGGTGGAAAGCACGGCGCAGTCGAGGCAGGCGAGCTACTACTGCACGTTG
TCGGGGGGTTTCAGCAGAGGGAGTTCAACGTATTCTTGTTGTCGTTTTTT
TACTGGGAGTGTGTGTTGTGTTTTTCGTCCGTGCAAGGTATTTTTTGTTG
TCGTTTTTTTACTGGGAGTCTAATTTTTCTGTGTCTTCGACTTCTTGTAT
CTGGTGGTTCAACATTTTTTTGTTTTTCAGTGGCAGTGGCCGTTGTCAGG
TCTTCTTAGCATGCGATTTCCCTGTGACGTTGCTTGGAATGTCGCCGGAA
AACGTACAAGGGTCGTCTCCAGCCCCCTCCTCGGTTGTGAGGAATGTGTA
GGTGTCCGCTTAACGGTAACATAGGGTCTTGCCTCTGTGGTAACTATGTA
CAATATGTATACGTCAAACTGGCATCCTGAAAGCTCCCTCGTACCACGTA
ATTGCACCTCCCGCTCCCGTTAGGCGTGTTTGTGACTACGGTCGTATCGA
CTAAAGAGGTCGAGCAAGCGTGTTTCTATGCCTCACTTCTGCGAGTGCCT
TCGATCACATGCTGCACTTAGCAGCGCTTGGGATTTCTCTTTGCAGTGCT
TGAACGCACGAACGGTGTGTTTTGCAACGTCACGCTCGGCACGTGCACTC
TCGTTTTTTTTTTGTGCGTTTCGGCCGCCACAGATGATGGCGCAGAGACG
GAACCTTCCGGCCTATCTGCAACGAGAGGATATCGTGAAAACCATCCGCG
ACAACCAGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig691:3575..4434+

>mRNA_E_fasciculatus_S2_contig691.15046.1 ID=mRNA_E_fasciculatus_S2_contig691.15046.1|Name=mRNA_E_fasciculatus_S2_contig691.15046.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig691:3575..4434+ (Ectocarpus fasciculatus EfasUO2)
GCACGGGCGAGGGAGCGGCAGTCGGGGGCTGCGAGGCGTGCGAGGGGCGG
CGACGTCTCCGACGCGGAAGCGGGGAAGCGCATGATGGACAAGAGGCGCG
AGGTGGAAAGCACGGCGCAGTCGAGGCAGATGATGGCGCAGAGACGGAAC
CTTCCGGCCTATCTGCAACGAGAGGATATCGTGAAAACCATCCGCGACAA
CCAG
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