mRNA_E_fasciculatus_S2_contig690.15035.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig690.15035.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR7_ECTSI) HSP 1 Score: 890 bits (2300), Expect = 3.150e-302 Identity = 634/902 (70.29%), Postives = 649/902 (71.95%), Query Frame = 3
Query: 588 MCSTKHFQAPRSSRPPLAAVEEAQGARNGVGGAYDPAVR-DTQGRRQSSGGTQERRSPRSSRQDTEATNVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKTVATPIVRDGEKPAGDDGERGANRTAGTDGASRGGTPSSAYPSSRNGGK-RARTPTPRTLAPAVQEVEASPSPVTVTHPTESXXXXXXXXXXARTLPRVRQATVGPCVVPPLTTDSDERDGDSGSXXXXXXXXSRGSGVSDAPEDVAATCSPPAPPSSEGALSSSCADGRHSWPAAVARVATLDFSGKPSLAVSSVVVTSPGSRASGSSGXXXXXXXXXXXXXXTA---SIVVCHSGGVSVWDLTDSEAFCTHLSPELASAAKELVPWRFMAAAVVGGDLAGSTPSATRALGGGEDACIMAVGRQGTDPGSPIFRVWQQGS-SPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRAKGVPASQPAVLTTTVKKKFSKFFPPAVPSHVTPCLCVCGYSGAKGERGDGAGGTVVGDEGRPEAGTAELAGEITAVMALGGKALRLVFGAGRSGSETFVAKQLPANLADDAVYTSLAPVPSNPYLVCASAPLVNAVLVWNVLDLDPLFTLPITTVSVCVPMTAAAS-DAVVARGVEAAAASEAAA---------AKTAPRMLCVLATGSRHAGGSSEGGVSSTWETSKVGCGLFGVYCGGGDGGAGTHSCGRVSAIRLEADAXXXXXXXXXXXXXDNERSRGGGERDHRENDARGGLRCLCDGGYGFVVGVDGQGKVVARSVLTGESRVLLAPDTAAA--NGDGAGDFAALDCDGDSSILALATARGPGGVAAATCVDLYEFCG 3239
MCSTKH+QAPRS R PLAAVE AQGA NGVGGA+DPA+R DTQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VATP V DG+K AG DGERGA RTAG ASRGG SS YPSSR GGK RARTP XXXXXXXXXXA LPR RQA VGPC+VPPLT DSDERDGDS XXXXXXXX SGVSDA EDVAAT P PPSSE A SSCADGRHSWP A+ARVATLDFSGKPSL VSSVVVTS GSR GS XXXXXXXXXX TA SIVVCHSGGVSVWDLTDSEA CTHLSPELASAAKELVPWRFMAAAVVGGDLAGSTPSATRA GGG+DACIMAVGRQGTDPGSPIFRVWQQGS SP AGRAK PA QPAVLTTTVKKKFSKFFPPAVPSHVTPCLCVCGYSGA GERGDGAGG VGDEG P A T+E A EITAVMALGGKALRLVFGAGRSGSETFVAKQLPA LADDAVYTSLAPVPSNPYLVCASAPLVN+VLVWNVLDL PLFTLPITTVSVCVP+ AAA+ +A VARGV A EAA AK APRMLC+LATGSRHAGGSSEGGVSST ETSKVGCGLFGVYCGGGDGGAG HSCGRVSAIRLEADA +N RSRGGGE DH ENDA GLRCL DGGYGFVVGVDG+GKVVARSVLTGESRVLLAPDTAAA N G FA L CDGDSSILALATARGPGGVAAATCVDLYEFCG
Sbjct: 1 MCSTKHYQAPRS-RSPLAAVEVAQGAGNGVGGAHDPAIRADTQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSKTPARATTARGAEPGGLVASLSADAPAPTAKSTPSRKKGGDGLEAAAAAETAVATPTVHDGKKTAGGDGERGAKRTAG---ASRGGALSSPYPSSRKGGKKRARTP----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGALPRERQAKVGPCIVPPLTADSDERDGDSXXXXXXXXXXGE-SGVSDASEDVAATRGPTVPPSSENAPPSSCADGRHSWPTAIARVATLDFSGKPSLVVSSVVVTSAGSRGRGSXXXXXXXXXXXXGSVTTAATASIVVCHSGGVSVWDLTDSEAICTHLSPELASAAKELVPWRFMAAAVVGGDLAGSTPSATRAPGGGKDACIMAVGRQGTDPGSPIFRVWQQGSPSPVPPLTPQGAGRADRRRSSGGTVGGS----AGRAKEAPALQPAVLTTTVKKKFSKFFPPAVPSHVTPCLCVCGYSGANGERGDGAGGAAVGDEGGPGAETSEFAREITAVMALGGKALRLVFGAGRSGSETFVAKQLPARLADDAVYTSLAPVPSNPYLVCASAPLVNSVLVWNVLDLRPLFTLPITTVSVCVPLAAAAAGNAAVARGVPRVA--EAAXXXXXXXXXXAKPAPRMLCLLATGSRHAGGSSEGGVSSTRETSKVGCGLFGVYCGGGDGGAGKHSCGRVSAIRLEADAEAGAGERPVAGEGENGRSRGGGEHDHPENDAGSGLRCLRDGGYGFVVGVDGRGKVVARSVLTGESRVLLAPDTAAAAANAGGGATFATLGCDGDSSILALATARGPGGVAAATCVDLYEFCG 887
BLAST of mRNA_E_fasciculatus_S2_contig690.15035.1 vs.
Match: RanBP2-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ1_9PHAE) HSP 1 Score: 883 bits (2281), Expect = 3.500e-296 Identity = 648/937 (69.16%), Postives = 667/937 (71.18%), Query Frame = 3
Query: 528 KTWDCVSCSFTNVETAKKCRMCSTKHFQAPRSSRPPLAAVEEAQGARNGVGGAYDPAVR-----------DTQGRRQSSGGTQERRSPRSSRQDTEATNVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKTVATPIVRDGEKPAGDDGERGANRTAGTDGASRGGTPSSAYPSSRNGGK-RARTPTPRTLAPAVQEVEASPSPVTVTHPTESXXXXXXXXXXARTLPRVRQATVGPCVVPPLTTDSDERDGDSGSXXXXXXXXSRGSGVSDAPEDVAATCSPPAPPSSEGALSSSCADGRHSWPAAVARVATLDFSGKPSLAVSSVVVTSPGSRASGSSGXXXXXXXXXXXXXX-TASIVVCHSGGVSVWDLTDSEAFCTHLSPELASAAKELVPWRFMAAAVVGGDLAGSTPSATRALGGGEDACIMAVGRQGTDPGSPIFRVWQQGS-SPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRAKGVPASQPAVLTTTVKKKFSKFFPPAVPSHVTPCLCVCGYSGAKGERGDGAGGTVVGDEGRPEAGTAELAGEITAVMALGGKALRLVFGAGRSGSETFVAKQLPANLADDA-VYTSLAPVPSNPYLVCASAPLVNAVLVWNVLDLDPLFTLPITTVSVCVPMTAAA-SDAVVARGVEAAAASEAAAA----------------KTAPRMLCVLATGSRHAGGSSEGGVSSTWETSKVGCGLFGVYCGGGDGGAGTHSCGRVSAIRLEADAXXXXXXXXXXXXXDNERSRGGGERDHRENDARGGLRCLCDGGYGFVVGVDGQGKVVARSVLTGESRVLLAPDTAAA--NGDGAGDFAALDCDGDSSILALATARGPGGVAAATCVDLYEFC 3236
K+WDCVSCSFTNVETAKKCRMCSTKH+QAPRSSR PLAAVE AQG NGVGGA+DP +R DT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VATP VRDG+K AGD+GERGA RTAGT GAS+GG SS YPSSR GK RART PTES A TLP+ RQA VGP VVP LT DSDER+ DS XXXXXXXX SGVSDA EDVAATC P PPSSE A SSCADGRHSWPAA+ARVATLDFSGKPSLAVSSVVVTS GSRASG XXXXXXXXXX TASIVVCHSGGVSVWDLTDSEA CTHLSPELASAAKELVPW+FMAAAVVGGDLAGSTPSATRA GGG+ A IMAVGRQGTDPGSPIFRVWQQGS SP XXXXXXXX RAKG P+ QPAVLTTTVKKKFSKFFPPAVPSH+ PCLCVCGYS A GERGDGAGG GDE P AGTAELAGEITAVMALGGKALRLVFGAGRSGSETFVAKQLP LADDA VYTSLAPVPSNPYLVCASAPLVNAVLVWNVLDL PLFTLPITTVSVCVP+ +AA +A VARGV A EAA K APRMLC+LATGSRHAGGSSE GVSST E SKV CGLFGVYCGGGDGGAG HSCGRVSAIRLEAD XXXXXXXXXXXXX E D RENDA GLRCLCD GYGFVVGVDG+GKVVARSVLTGESRVLLAPDTAAA N DG FAAL CD DSSILALATARGP GVAAATCVDLYEFC
Sbjct: 181 KSWDCVSCSFTNVETAKKCRMCSTKHYQAPRSSRSPLAAVEVAQGPGNGVGGAHDPDIRGALSSFCALAADTHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSTPGRAITAKGAEPAGLAASFSADAPVPAAKNTPSGKREGDGLKAAAAAKAAVATPTVRDGKKTAGDNGERGAKRTAGTAGASQGGALSSPYPSSRKAGKKRARTXXXXXXXXXXXXXXXXXXXXXXXXPTESQPSPPP----AGTLPQERQAKVGPWVVPLLTADSDERNDDSXXXXXXXXXXX--SGVSDASEDVAATCGPTVPPSSEDAPPSSCADGRHSWPAAIARVATLDFSGKPSLAVSSVVVTSAGSRASGXXXXXXXXXXXXXVATAATASIVVCHSGGVSVWDLTDSEAICTHLSPELASAAKELVPWKFMAAAVVGGDLAGSTPSATRAPGGGKGAYIMAVGRQGTDPGSPIFRVWQQGSPSPVPPLTPQDARRADRRRSSGXXXXXXXX----RAKGAPSLQPAVLTTTVKKKFSKFFPPAVPSHIMPCLCVCGYSVANGERGDGAGGMAAGDEDGPGAGTAELAGEITAVMALGGKALRLVFGAGRSGSETFVAKQLPTKLADDAAVYTSLAPVPSNPYLVCASAPLVNAVLVWNVLDLRPLFTLPITTVSVCVPLASAAVGNAAVARGVPMVA--EAAXXXXXXXXXXXXXXXXXXKPAPRMLCLLATGSRHAGGSSESGVSSTREKSKVVCGLFGVYCGGGDGGAGKHSCGRVSAIRLEADXXXXXXXXXXXXXXXXXXXXXXXEHDDRENDAGSGLRCLCDSGYGFVVGVDGRGKVVARSVLTGESRVLLAPDTAAAEANADGRATFAALGCDEDSSILALATARGPDGVAAATCVDLYEFC 1105
BLAST of mRNA_E_fasciculatus_S2_contig690.15035.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR8_ECTSI) HSP 1 Score: 633 bits (1633), Expect = 8.440e-207 Identity = 333/365 (91.23%), Postives = 343/365 (93.97%), Query Frame = -2
Query: 3461 SLQERIRRAQWAAHLESLDAVEALYGKEFDMLPSRAEREFARGWCRAARLLAVSAAHTNLERCLLPLGAGYAPERLLTDDEDFLTAASRKQGPRSLESVPFGPPDSAAETESGSAVVALNTRRCVASVRWLGTLRAPVFAALCRLWRRSCVSYPARRRAARVLREACYGGRRAKAAAWAKSFLFLLVPDLNYRKLTFPLGVDPAEEVEYDPDFEPRDFSKPQPRPVGSRPLNPLQWPWYEGRRPDPSAGLPGGQGWGEDDDGLLASPTPLGAAGGMFPPGREPVDGSFEAGERREKEVMEDLRALGYNLDEREGSKGGGGDGEARRRSSREGGXXXXXXXXXXXXXXXAAPGEGKAARPNNTVFL 4555
S++ERIRRAQWAAHLESLDAVEALYGKEFDMLPSRAEREFARGWCRAARL AV+AAHTNLERCLLPLGAGYAPERLLTDD+DFLTAA+RKQGPRSLESVPFGPPDS AE E SAVVALNTRRCV SVRWLGTLRAPV A LCRLWRRSC SYPARRR ARVLREACYGGRRAKAAAWAKSFLFL VPDLNYRKLTFPLGVDPAEEVEYDPDFEPRDFSKP PRPVGSRPLNPLQWPWYEGRRPDPSAGLPGG+GWGEDDDGLLASP+ + AAGGMFPPGREPVDGSFEAG+RRE+EVMEDLRALGYNLDEREGSKGG GDGEAR R SREGG XXXXXXXXXXXXXX GEGKAARPN TVFL
Sbjct: 274 SIKERIRRAQWAAHLESLDAVEALYGKEFDMLPSRAEREFARGWCRAARLFAVAAAHTNLERCLLPLGAGYAPERLLTDDDDFLTAAARKQGPRSLESVPFGPPDSVAEAERDSAVVALNTRRCVTSVRWLGTLRAPVLAGLCRLWRRSCASYPARRRVARVLREACYGGRRAKAAAWAKSFLFLFVPDLNYRKLTFPLGVDPAEEVEYDPDFEPRDFSKPYPRPVGSRPLNPLQWPWYEGRRPDPSAGLPGGEGWGEDDDGLLASPSAVAAAGGMFPPGREPVDGSFEAGQRREQEVMEDLRALGYNLDEREGSKGGSGDGEARHRGSREGGSXXXXXXXXXXXXXXXXXGEGKAARPNKTVFL 638
BLAST of mRNA_E_fasciculatus_S2_contig690.15035.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ4_9PHAE) HSP 1 Score: 399 bits (1026), Expect = 3.640e-120 Identity = 196/212 (92.45%), Postives = 202/212 (95.28%), Query Frame = -2
Query: 4208 LSSTPGSIKVDPNSWWGRVSFALTIVPLVAAVESGVWDDDQVAAISVLGVSGDGPGQNDDLQLPELRRAVRAWRRVWRFRDPDIADRVALDMPVHDSLQERIRRAQWAAHLESLDAVEALYGKEFDMLPSRAEREFARGWCRAARLLAVSAAHTNLERCLLPLGAGYAPERLLTDDEDFLTAASRKQGPRSLESVPFGPPDSAAETESGSAV 4843
LSSTPGSIKVDPNSWWGRVSFALTIVPLVAAVESG WDDDQVAAISVLGVSGDG G+NDDLQLPELRRAVRAWRRVWRFRDPDIADRV LDMPVHDSLQER+RRAQWAAHLESLDAVEALYGKEFDMLPS+AEREFARGWCRAARL A +AAHTNLERCLLPLGAGYAPERLLTDD+DFLTAA+RKQGPRSLESVPFGPPD AE E SAV
Sbjct: 268 LSSTPGSIKVDPNSWWGRVSFALTIVPLVAAVESGAWDDDQVAAISVLGVSGDGSGRNDDLQLPELRRAVRAWRRVWRFRDPDIADRVVLDMPVHDSLQERVRRAQWAAHLESLDAVEALYGKEFDMLPSKAEREFARGWCRAARLFAAAAAHTNLERCLLPLGAGYAPERLLTDDDDFLTAAARKQGPRSLESVPFGPPDLVAEAERDSAV 479 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig690.15035.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig690.15035.1 >prot_E_fasciculatus_S2_contig690.15035.1 ID=prot_E_fasciculatus_S2_contig690.15035.1|Name=mRNA_E_fasciculatus_S2_contig690.15035.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=213bp MIRTYRPRLSKDKAVAQRLQDLSTASQIDGVLDNSNPAAAAAAAAAAAAGback to top mRNA from alignment at E_fasciculatus_S2_contig690:17688..24092+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig690.15035.1 ID=mRNA_E_fasciculatus_S2_contig690.15035.1|Name=mRNA_E_fasciculatus_S2_contig690.15035.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig690:17688..24092+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig690:17688..24092+ >mRNA_E_fasciculatus_S2_contig690.15035.1 ID=mRNA_E_fasciculatus_S2_contig690.15035.1|Name=mRNA_E_fasciculatus_S2_contig690.15035.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=639bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig690:17688..24092+ (Ectocarpus fasciculatus EfasUO2)back to top |