mRNA_E_fasciculatus_S2_contig69.15027.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig69.15027.1
Unique NamemRNA_E_fasciculatus_S2_contig69.15027.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig69.15027.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW69_ECTSI)

HSP 1 Score: 582 bits (1499), Expect = 3.730e-204
Identity = 294/310 (94.84%), Postives = 299/310 (96.45%), Query Frame = 3 
Query:  108 MKLTVGVASFSLTVVYAFQA-PFGLPQGTNRRSGTAALASVDGWVALPVNPSAGGRSRTVSFSPSNLEDLQVVEKILQQDQVGEACVLIIPSWRHHPVQYDCLSACLEALKIPTAVQPLPDGLWALLLQRLQVHSLRKAARKGVLEQLIVHALQRPFNHLDHALRMHSDRNTGRRITVIASDDSAWLVRAFVNSRSQEWRKEVPLDTAVLVGGYHKSIVGDLALDVFPNPPPSAPLDGRVVKFFSLNGREGGRVDGGGDLDLEASISCMSFEEDSESCILQEYEVEHNGWLSLLGSTSLLSLWVPRVLRA 1034
            MKLTVGVASFSLTVVYAFQA P G+PQG  RRS TAALAS DGWVALPVNPSAGGRSRTVSFSPSNLEDLQVVEKILQQDQVGEACVLIIPSWRHHPVQYDCLSACLEALKIPTAVQPLPDGLWALLLQRLQVHSLRKAARKGVLEQLIVHAL RPFNHLD ALR+HSDRNTGRRITVIASDDSAWLVRAFVNSRSQ+WRKEVPLDTAVLVGGYHKSIVGDLALDVFPNPPPS P DGRVVKFFSLNGREGGRVDG GD+DLEASISCMSFEEDSESCILQEYEVEH+GWLSLLGSTSLLSLWVPRVLRA
Sbjct:    1 MKLTVGVASFSLTVVYAFQARPLGIPQGGGRRS-TAALASTDGWVALPVNPSAGGRSRTVSFSPSNLEDLQVVEKILQQDQVGEACVLIIPSWRHHPVQYDCLSACLEALKIPTAVQPLPDGLWALLLQRLQVHSLRKAARKGVLEQLIVHALHRPFNHLDLALRLHSDRNTGRRITVIASDDSAWLVRAFVNSRSQQWRKEVPLDTAVLVGGYHKSIVGDLALDVFPNPPPSPPPDGRVVKFFSLNGREGGRVDGNGDIDLEASISCMSFEEDSESCILQEYEVEHSGWLSLLGSTSLLSLWVPRVLRA 309
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig69.15027.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.730e-20494.84protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW69... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig69contigE_fasciculatus_S2_contig69:31571..34805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1860
Hectar predicted targeting categorychloroplast
Exons4
Cds size930
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig69.15027.1prot_E_fasciculatus_S2_contig69.15027.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig69 32394..34698 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842346.7029786-UTR-E_fasciculatus_S2_contig69:31570..323931696842346.7029786-UTR-E_fasciculatus_S2_contig69:31570..32393Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig69 31571..32393 -
1696842346.757849-UTR-E_fasciculatus_S2_contig69:34698..348051696842346.757849-UTR-E_fasciculatus_S2_contig69:34698..34805Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig69 34699..34805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842346.7145116-CDS-E_fasciculatus_S2_contig69:32393..329301696842346.7145116-CDS-E_fasciculatus_S2_contig69:32393..32930Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig69 32394..32930 -
1696842346.724976-CDS-E_fasciculatus_S2_contig69:33218..333701696842346.724976-CDS-E_fasciculatus_S2_contig69:33218..33370Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig69 33219..33370 -
1696842346.735626-CDS-E_fasciculatus_S2_contig69:33749..338831696842346.735626-CDS-E_fasciculatus_S2_contig69:33749..33883Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig69 33750..33883 -
1696842346.7474303-CDS-E_fasciculatus_S2_contig69:34591..346981696842346.7474303-CDS-E_fasciculatus_S2_contig69:34591..34698Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig69 34592..34698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig69.15027.1

>prot_E_fasciculatus_S2_contig69.15027.1 ID=prot_E_fasciculatus_S2_contig69.15027.1|Name=mRNA_E_fasciculatus_S2_contig69.15027.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=310bp
MKLTVGVASFSLTVVYAFQAPFGLPQGTNRRSGTAALASVDGWVALPVNP
SAGGRSRTVSFSPSNLEDLQVVEKILQQDQVGEACVLIIPSWRHHPVQYD
CLSACLEALKIPTAVQPLPDGLWALLLQRLQVHSLRKAARKGVLEQLIVH
ALQRPFNHLDHALRMHSDRNTGRRITVIASDDSAWLVRAFVNSRSQEWRK
EVPLDTAVLVGGYHKSIVGDLALDVFPNPPPSAPLDGRVVKFFSLNGREG
GRVDGGGDLDLEASISCMSFEEDSESCILQEYEVEHNGWLSLLGSTSLLS
LWVPRVLRA*
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mRNA from alignment at E_fasciculatus_S2_contig69:31571..34805-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig69.15027.1 ID=mRNA_E_fasciculatus_S2_contig69.15027.1|Name=mRNA_E_fasciculatus_S2_contig69.15027.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3235bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig69:31571..34805- (Ectocarpus fasciculatus EfasUO2)
AGCACGTGACGTGGCACCACCACTCTCGTTGCTCTCGCCCCCCCCTCTCC
CCCCCTTCTCTCTGTGGTGCGTGCGTGTGGGTGGCCTGGTCGACGCTGAC
GAAAGAAATGAAGCTAACCGTCGGCGTGGCCTCCTTCTCGCTGACCGTTG
TATACGCGTTTCAGGCTCCTTTCGGACTACCGCAAGGAACTAATAGGCGA
TCCGGGACGGCTGCGTGAGTCTTTTGAGAGCCAGCTGGATGTATGCATAG
ATCATCAACGTTGTATTTTGATCCTGTTCGTCTCCTCTCGGAACCATTTG
TGGTTAGGTAAAAGCCCTGCAGAACCAACGTGGGCGTCGTGACGAGGAAG
CGACGCCACATCCACGGGTACAAAGCAAAAAAGAAGACAAGACTACTGGA
CTACTTTGACCTACCAGCAGCATTTGTCGATTGCAGTGCGCTGTTGTGTG
CCGCTGCTGTGTCCCCGTGATTCAGCAGCAAGTTTACCGTGGACGCGTCT
AAATGATTCAAATACCCTAAGATCTAGTCATGGCTGCCAAACGTATTTGA
TCAGGGTGTCCACGTCATGCAATACTAATACTTGTATCACGGTGTCATCT
GTACAACAACAGCGGTATCGGACCCGTCAGCCCCCTTTGCGGAGAGCTGA
AATTTGAAATTTGTCCGCAACACAATCGCATGATATTACCTCTTTTGTGC
CGCCGATCGAGTGCTGTAGCAACGAGACGCGATTGGATGCACTTACAACG
TTGATTTTGCCACGTTCCTGTGGAATACATCGAGTTGGACTTCGATCTCT
TCTGTGCTGTTTGGAAGCAACTCCGCTCTCCATAACTACAGCAGTATGCA
TATCATACGGATTAATATGCATATGATATGAAGTATGACCCCAACGCGTT
TCCGGATGTGATTCGTCTGCAGGCTAGCATCGGTCGACGGCTGGGTCGCC
CTACCGGTAAATCCCTCCGCAGGTGGCCGGTCCAGAACAGTTTCGTTTAG
CCCGTCCAACCTGGAAGACTTGCAGGTCGTTGAAAAAATTCTCCAACAAG
ATCAAGGTAAATGGAAAGACTACTGCTGTACTGTAGATACTGCTTTGGGC
CGTCCGTTCTCCAGCGAGAATCAACATACCTCTTACCGCTCTCTCGTCAA
ACCTTAGCCTGCGTCTTTGCTGGGCGTATAGTCCTTGGTTTGGCGTACTG
CACCTCTACACAGTTCCACACAAGCGTCCCCATTCCGTCGAAGCAGAATG
CCATCTTACACCGTTTTGTGTACCAGCATGTGTATCAAGTTTGCGATTCC
TACTGGCTCTGTGCCATTCAGCTGGCGAAATGTGATCTTGTCAACTTGCG
GCGCATCCTACCCCGGTATGCTCTGTGTTCCACTGGCTTTAATCCTTTCA
CCCCATCCTGTTTTGTGTTTCGTCGTATTTTCTAGTCGGTGAAGCTTGCG
TCTTGATCATTCCGAGCTGGCGACATCATCCTGTCCAGTATGACTGTCTA
TCAGCCTGTTTAGAGGCCCTCAAGATCCCCACTGCAGTGCAGCCCCTTCC
CGATGGATTGTGGGCACTTCTCCTTCAACGCCTTCAGGTGAACCCTTGGA
ACATGTTGTCGCCTTACGTGCACAGCAATATTTCTTTATTTCAGTACATT
CCCGAATTCTGGCTTACGCTATGTGTTGGCGGGCTGCTGTCTTGAAAACG
TCACGCTTTAGGTAGTGCACTAGGGTTACTTGCACCCATTTTTTTCGACC
AAACACCATCGTTCAGCGAAGAATGCAGCCGTTGATGTGTTTGTTCGCTG
GTTATAACGCAAGTGCACCCTGCAGTTATTGCCGTTCGTAGTTGTGATCT
CGTCGAGTCCTGTGGAAACCACCAGGTGCATTCACTACGGAAAGCTGCGA
GAAAAGGAGTCCTGGAACAACTGATTGTGCACGCTCTGCAGAGGCCATTT
AATCATCTGGATCATGCGCTCAGAATGCACTCAGATCGGAACACCGGGCG
TCGTATAACCGTCATCGCATCGGACGACTCGGCGTGGCTTGTGAGGGCAT
TCGTGAACAGCCGCTCCCAAGAGTGGCGTAAAGAGGTGCCTTTGGACACG
GCGGTACTCGTCGGTGGGTATCATAAGAGCATTGTTGGAGATCTAGCGTT
GGATGTGTTTCCCAACCCACCACCATCAGCACCTCTGGATGGACGCGTTG
TTAAGTTTTTCAGCTTGAACGGTCGCGAAGGTGGTCGAGTGGATGGGGGT
GGCGACCTTGACCTAGAGGCTTCGATATCGTGCATGTCGTTTGAAGAAGA
CTCCGAGAGCTGTATTCTCCAGGAGTACGAGGTTGAACACAACGGTTGGC
TCTCTTTGTTAGGATCAACCTCTCTGCTGAGCTTATGGGTTCCTCGTGTT
TTACGTGCATAACGGTCTTGTTTAAATTACAGAAATTTTCCTGGTTGCTA
TCTATATCGTGTGTGGGGAATTGTGTGGGCATCTGGCTAACTGTTATTGG
CAGTGTCCTGTTGCCGGTGGTGTGCGCAGCGTCTTCCGCGTGAAACCCAA
CCTTGTATATAACTTGTCCAGAGATTGTTGAATGTGTTGTTTTTGACATG
ACCGCTCACGTCCACTACTGTAATTTGTTACTTCTTCGGTACGGTCGGTT
TTGGCATGGTTTTTTCGTCACGATAGCAGCAGTTGATCGCCTGCTCTCCG
TCATGTGCACTGGAGCCACGGTATAGGAAAGGACCCGTACACCCTGAAGC
ACCAGATAAGACGTCATGCTGTTGATGGGCAAAGCCAAAAAATGTCGATT
GCAACTCCTGGGTAGTATGCAAATGTCGAAAGGTTCGAGGGCATTGCCAA
CAAAGAGTATCGAAGTGGTGACAACGAAGAAATCGGCCCCCCACAACCAA
ATCACACAAGAAATTAAAGTTATCAAACTAGTATGCAACACCAACACACA
TTTTCTGCTTCAGAAACCTTGGGTCTACGAAAGTCTCCGATTTGAGAATT
GTGTGTTCTCCGTATTTTCACAAGGGCATCCACGAAATTTGTGCGAAACC
CCCGTTTTGATTTTCTTGTGTGGTGGTATATCTCGGTTCAAACAAACCTA
CGTGCGGACAAACGTAGATCGAGTACAACATCTGTAGGCTCTGTCCTACG
GGAGGGAGTAATCGCCGTTCAATGCAACATTCTGCAAACAAACGTGTACC
AGATACATCTGTAGTTATCCAATAAAACTGCAAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig69:31571..34805-

>mRNA_E_fasciculatus_S2_contig69.15027.1 ID=mRNA_E_fasciculatus_S2_contig69.15027.1|Name=mRNA_E_fasciculatus_S2_contig69.15027.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=930bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig69:31571..34805- (Ectocarpus fasciculatus EfasUO2)
ATGAAGCTAACCGTCGGCGTGGCCTCCTTCTCGCTGACCGTTGTATACGC
GTTTCAGGCTCCTTTCGGACTACCGCAAGGAACTAATAGGCGATCCGGGA
CGGCTGCGCTAGCATCGGTCGACGGCTGGGTCGCCCTACCGGTAAATCCC
TCCGCAGGTGGCCGGTCCAGAACAGTTTCGTTTAGCCCGTCCAACCTGGA
AGACTTGCAGGTCGTTGAAAAAATTCTCCAACAAGATCAAGTCGGTGAAG
CTTGCGTCTTGATCATTCCGAGCTGGCGACATCATCCTGTCCAGTATGAC
TGTCTATCAGCCTGTTTAGAGGCCCTCAAGATCCCCACTGCAGTGCAGCC
CCTTCCCGATGGATTGTGGGCACTTCTCCTTCAACGCCTTCAGGTGCATT
CACTACGGAAAGCTGCGAGAAAAGGAGTCCTGGAACAACTGATTGTGCAC
GCTCTGCAGAGGCCATTTAATCATCTGGATCATGCGCTCAGAATGCACTC
AGATCGGAACACCGGGCGTCGTATAACCGTCATCGCATCGGACGACTCGG
CGTGGCTTGTGAGGGCATTCGTGAACAGCCGCTCCCAAGAGTGGCGTAAA
GAGGTGCCTTTGGACACGGCGGTACTCGTCGGTGGGTATCATAAGAGCAT
TGTTGGAGATCTAGCGTTGGATGTGTTTCCCAACCCACCACCATCAGCAC
CTCTGGATGGACGCGTTGTTAAGTTTTTCAGCTTGAACGGTCGCGAAGGT
GGTCGAGTGGATGGGGGTGGCGACCTTGACCTAGAGGCTTCGATATCGTG
CATGTCGTTTGAAGAAGACTCCGAGAGCTGTATTCTCCAGGAGTACGAGG
TTGAACACAACGGTTGGCTCTCTTTGTTAGGATCAACCTCTCTGCTGAGC
TTATGGGTTCCTCGTGTTTTACGTGCATAA
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